Experiment: rhizosphere sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS04465 and ABZR87_RS04470 are separated by 5 nucleotides ABZR87_RS04470 and ABZR87_RS04475 are separated by 494 nucleotides ABZR87_RS04475 and ABZR87_RS04480 are separated by 683 nucleotides
ABZR87_RS04465: ABZR87_RS04465 - hypothetical protein, at 933,604 to 933,933
_RS04465
ABZR87_RS04470: ABZR87_RS04470 - hypothetical protein, at 933,939 to 934,253
_RS04470
ABZR87_RS04475: ABZR87_RS04475 - hypothetical protein, at 934,748 to 935,110
_RS04475
ABZR87_RS04480: ABZR87_RS04480 - hypothetical protein, at 935,794 to 936,276
_RS04480
Position (kb) 934
935
936 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 933.816 kb on + strand, within ABZR87_RS04465 at 933.892 kb on + strand, within ABZR87_RS04465 at 933.893 kb on - strand, within ABZR87_RS04465 at 933.893 kb on - strand, within ABZR87_RS04465 at 933.893 kb on - strand, within ABZR87_RS04465 at 933.893 kb on - strand, within ABZR87_RS04465 at 933.936 kb on + strand at 933.937 kb on - strand at 933.937 kb on - strand at 933.937 kb on - strand at 934.041 kb on + strand, within ABZR87_RS04470 at 934.068 kb on + strand, within ABZR87_RS04470 at 934.069 kb on - strand, within ABZR87_RS04470 at 934.069 kb on - strand, within ABZR87_RS04470 at 934.149 kb on + strand, within ABZR87_RS04470 at 934.149 kb on + strand, within ABZR87_RS04470 at 934.149 kb on + strand, within ABZR87_RS04470 at 934.149 kb on + strand, within ABZR87_RS04470 at 934.149 kb on + strand, within ABZR87_RS04470 at 934.150 kb on - strand, within ABZR87_RS04470 at 934.160 kb on + strand, within ABZR87_RS04470 at 934.255 kb on - strand at 934.273 kb on + strand at 934.274 kb on - strand at 934.396 kb on + strand at 934.396 kb on + strand at 934.397 kb on - strand at 934.397 kb on - strand at 934.413 kb on + strand at 934.413 kb on + strand at 934.414 kb on - strand at 934.414 kb on - strand at 934.414 kb on - strand at 934.437 kb on + strand at 934.438 kb on - strand at 934.438 kb on - strand at 934.438 kb on - strand at 934.481 kb on + strand at 934.482 kb on - strand at 934.577 kb on + strand at 934.599 kb on + strand at 934.599 kb on + strand at 934.599 kb on + strand at 934.632 kb on + strand at 934.632 kb on + strand at 934.633 kb on - strand at 934.633 kb on - strand at 934.633 kb on - strand at 934.634 kb on + strand at 934.634 kb on + strand at 934.634 kb on + strand at 934.634 kb on + strand at 934.634 kb on + strand at 934.634 kb on + strand at 934.634 kb on + strand at 934.635 kb on - strand at 934.635 kb on - strand at 934.645 kb on + strand at 934.645 kb on + strand at 934.645 kb on + strand at 934.646 kb on - strand at 934.655 kb on - strand at 934.676 kb on + strand at 934.676 kb on + strand at 934.676 kb on + strand at 934.677 kb on - strand at 934.677 kb on - strand at 934.677 kb on - strand at 934.677 kb on - strand at 934.750 kb on - strand at 934.772 kb on + strand at 934.773 kb on - strand at 934.832 kb on + strand, within ABZR87_RS04475 at 934.832 kb on + strand, within ABZR87_RS04475 at 934.833 kb on - strand, within ABZR87_RS04475 at 934.836 kb on + strand, within ABZR87_RS04475 at 934.836 kb on + strand, within ABZR87_RS04475 at 934.836 kb on + strand, within ABZR87_RS04475 at 934.836 kb on + strand, within ABZR87_RS04475 at 934.836 kb on + strand, within ABZR87_RS04475 at 934.836 kb on + strand, within ABZR87_RS04475 at 934.836 kb on + strand, within ABZR87_RS04475 at 934.836 kb on + strand, within ABZR87_RS04475 at 934.836 kb on + strand, within ABZR87_RS04475 at 934.837 kb on - strand, within ABZR87_RS04475 at 934.837 kb on - strand, within ABZR87_RS04475 at 934.867 kb on + strand, within ABZR87_RS04475 at 934.974 kb on + strand, within ABZR87_RS04475 at 934.975 kb on - strand, within ABZR87_RS04475 at 934.975 kb on - strand, within ABZR87_RS04475 at 934.975 kb on - strand, within ABZR87_RS04475 at 934.975 kb on - strand, within ABZR87_RS04475 at 935.004 kb on + strand, within ABZR87_RS04475 at 935.020 kb on + strand, within ABZR87_RS04475 at 935.021 kb on - strand, within ABZR87_RS04475 at 935.073 kb on + strand, within ABZR87_RS04475 at 935.073 kb on + strand, within ABZR87_RS04475 at 935.074 kb on - strand at 935.074 kb on - strand at 935.074 kb on - strand at 935.074 kb on - strand at 935.074 kb on - strand at 935.074 kb on - strand at 935.152 kb on + strand at 935.153 kb on - strand at 935.242 kb on + strand at 935.252 kb on - strand at 935.326 kb on + strand at 935.326 kb on + strand at 935.326 kb on + strand at 935.326 kb on + strand at 935.327 kb on - strand at 935.362 kb on + strand at 935.362 kb on + strand at 935.362 kb on + strand at 935.362 kb on + strand at 935.362 kb on + strand at 935.363 kb on - strand at 935.363 kb on - strand at 935.363 kb on - strand at 935.363 kb on - strand at 935.364 kb on + strand at 935.364 kb on + strand at 935.529 kb on + strand at 935.529 kb on + strand at 935.529 kb on + strand at 935.529 kb on + strand at 935.529 kb on + strand at 935.530 kb on - strand at 935.530 kb on - strand at 935.530 kb on - strand at 935.530 kb on - strand at 935.530 kb on - strand at 935.780 kb on - strand at 935.780 kb on - strand at 935.972 kb on + strand, within ABZR87_RS04480 at 935.972 kb on + strand, within ABZR87_RS04480 at 935.973 kb on - strand, within ABZR87_RS04480 at 935.973 kb on - strand, within ABZR87_RS04480
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 3; outgrowth in LB remove 933,816 + ABZR87_RS04465 0.64 -2.1 933,892 + ABZR87_RS04465 0.87 +0.2 933,893 - ABZR87_RS04465 0.88 -0.7 933,893 - ABZR87_RS04465 0.88 +1.6 933,893 - ABZR87_RS04465 0.88 +0.2 933,893 - ABZR87_RS04465 0.88 -0.4 933,936 + -1.6 933,937 - -1.7 933,937 - -1.3 933,937 - -1.0 934,041 + ABZR87_RS04470 0.32 +3.4 934,068 + ABZR87_RS04470 0.41 -0.6 934,069 - ABZR87_RS04470 0.41 -1.1 934,069 - ABZR87_RS04470 0.41 -0.1 934,149 + ABZR87_RS04470 0.67 -0.3 934,149 + ABZR87_RS04470 0.67 +0.3 934,149 + ABZR87_RS04470 0.67 +2.7 934,149 + ABZR87_RS04470 0.67 +0.4 934,149 + ABZR87_RS04470 0.67 +0.5 934,150 - ABZR87_RS04470 0.67 -2.0 934,160 + ABZR87_RS04470 0.70 -0.1 934,255 - -0.0 934,273 + -0.5 934,274 - +0.8 934,396 + -2.2 934,396 + +0.4 934,397 - +0.3 934,397 - +0.3 934,413 + +2.2 934,413 + +0.3 934,414 - -0.0 934,414 - +0.9 934,414 - -0.3 934,437 + +0.1 934,438 - -0.3 934,438 - +0.5 934,438 - -0.3 934,481 + +0.9 934,482 - -0.3 934,577 + -0.2 934,599 + -0.3 934,599 + -0.1 934,599 + +1.1 934,632 + -1.0 934,632 + -0.7 934,633 - +0.3 934,633 - +0.5 934,633 - -0.3 934,634 + -0.4 934,634 + -1.1 934,634 + -2.1 934,634 + +0.9 934,634 + -0.3 934,634 + -0.9 934,634 + -0.0 934,635 - +0.6 934,635 - +1.0 934,645 + +0.7 934,645 + +3.4 934,645 + -1.7 934,646 - -0.4 934,655 - +2.6 934,676 + -0.5 934,676 + -0.9 934,676 + +1.3 934,677 - +3.7 934,677 - -0.0 934,677 - -1.7 934,677 - -2.1 934,750 - +0.6 934,772 + -0.7 934,773 - -0.7 934,832 + ABZR87_RS04475 0.23 +0.6 934,832 + ABZR87_RS04475 0.23 +1.1 934,833 - ABZR87_RS04475 0.23 +0.6 934,836 + ABZR87_RS04475 0.24 -0.1 934,836 + ABZR87_RS04475 0.24 +0.4 934,836 + ABZR87_RS04475 0.24 +0.3 934,836 + ABZR87_RS04475 0.24 -0.4 934,836 + ABZR87_RS04475 0.24 -0.3 934,836 + ABZR87_RS04475 0.24 -1.6 934,836 + ABZR87_RS04475 0.24 -0.2 934,836 + ABZR87_RS04475 0.24 -0.9 934,836 + ABZR87_RS04475 0.24 -1.3 934,837 - ABZR87_RS04475 0.25 +1.0 934,837 - ABZR87_RS04475 0.25 -0.5 934,867 + ABZR87_RS04475 0.33 +1.3 934,974 + ABZR87_RS04475 0.62 +1.1 934,975 - ABZR87_RS04475 0.63 +1.1 934,975 - ABZR87_RS04475 0.63 -0.7 934,975 - ABZR87_RS04475 0.63 -0.0 934,975 - ABZR87_RS04475 0.63 +0.9 935,004 + ABZR87_RS04475 0.71 +0.2 935,020 + ABZR87_RS04475 0.75 -0.6 935,021 - ABZR87_RS04475 0.75 +0.6 935,073 + ABZR87_RS04475 0.90 -0.8 935,073 + ABZR87_RS04475 0.90 +1.1 935,074 - +0.2 935,074 - +0.6 935,074 - -2.4 935,074 - -0.8 935,074 - +0.2 935,074 - +0.8 935,152 + -0.1 935,153 - +2.0 935,242 + -0.4 935,252 - -0.1 935,326 + -0.5 935,326 + +0.3 935,326 + +0.3 935,326 + -0.5 935,327 - +0.6 935,362 + +2.7 935,362 + -1.2 935,362 + +0.0 935,362 + +1.1 935,362 + -0.2 935,363 - +0.4 935,363 - +0.5 935,363 - -1.5 935,363 - -0.3 935,364 + -0.3 935,364 + -1.2 935,529 + -0.7 935,529 + +0.5 935,529 + -0.2 935,529 + +0.7 935,529 + +0.3 935,530 - -0.2 935,530 - -0.4 935,530 - +0.5 935,530 - +1.2 935,530 - -1.1 935,780 - -1.3 935,780 - -0.4 935,972 + ABZR87_RS04480 0.37 -1.1 935,972 + ABZR87_RS04480 0.37 -0.6 935,973 - ABZR87_RS04480 0.37 -2.1 935,973 - ABZR87_RS04480 0.37 +2.4
Or see this region's nucleotide sequence