Experiment: rhizosphere sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS04160 and ABZR87_RS04165 are separated by 105 nucleotides ABZR87_RS04165 and ABZR87_RS04170 overlap by 15 nucleotides ABZR87_RS04170 and ABZR87_RS04175 are separated by 169 nucleotides
ABZR87_RS04160: ABZR87_RS04160 - LysR family transcriptional regulator, at 871,574 to 872,470
_RS04160
ABZR87_RS04165: ABZR87_RS04165 - SDR family oxidoreductase, at 872,576 to 873,544
_RS04165
ABZR87_RS04170: ABZR87_RS04170 - phosphonate degradation HD-domain oxygenase, at 873,530 to 874,081
_RS04170
ABZR87_RS04175: ABZR87_RS04175 - cupin domain-containing protein, at 874,251 to 874,628
_RS04175
Position (kb) 872
873
874 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 871.590 kb on + strand at 871.590 kb on + strand at 871.590 kb on + strand at 871.590 kb on + strand at 871.590 kb on + strand at 871.590 kb on + strand at 871.590 kb on + strand at 871.590 kb on + strand at 871.590 kb on + strand at 871.591 kb on - strand at 871.591 kb on - strand at 871.591 kb on - strand at 871.885 kb on - strand, within ABZR87_RS04160 at 871.948 kb on - strand, within ABZR87_RS04160 at 871.948 kb on - strand, within ABZR87_RS04160 at 871.948 kb on - strand, within ABZR87_RS04160 at 872.107 kb on - strand, within ABZR87_RS04160 at 872.160 kb on + strand, within ABZR87_RS04160 at 872.439 kb on + strand at 872.440 kb on - strand at 872.440 kb on - strand at 872.470 kb on + strand at 872.481 kb on - strand at 872.617 kb on - strand at 872.924 kb on + strand, within ABZR87_RS04165 at 872.924 kb on + strand, within ABZR87_RS04165 at 872.924 kb on + strand, within ABZR87_RS04165 at 872.925 kb on - strand, within ABZR87_RS04165 at 872.925 kb on - strand, within ABZR87_RS04165 at 872.925 kb on - strand, within ABZR87_RS04165 at 872.925 kb on - strand, within ABZR87_RS04165 at 872.925 kb on - strand, within ABZR87_RS04165 at 872.925 kb on - strand, within ABZR87_RS04165 at 873.191 kb on + strand, within ABZR87_RS04165 at 873.191 kb on + strand, within ABZR87_RS04165 at 873.192 kb on - strand, within ABZR87_RS04165 at 873.192 kb on - strand, within ABZR87_RS04165 at 873.192 kb on - strand, within ABZR87_RS04165 at 873.192 kb on - strand, within ABZR87_RS04165 at 873.263 kb on + strand, within ABZR87_RS04165 at 873.264 kb on - strand, within ABZR87_RS04165 at 873.422 kb on + strand, within ABZR87_RS04165 at 873.422 kb on + strand, within ABZR87_RS04165 at 873.423 kb on - strand, within ABZR87_RS04165 at 873.423 kb on - strand, within ABZR87_RS04165 at 873.532 kb on - strand at 873.532 kb on - strand at 873.532 kb on - strand at 873.717 kb on - strand, within ABZR87_RS04170 at 873.741 kb on + strand, within ABZR87_RS04170 at 873.741 kb on + strand, within ABZR87_RS04170 at 873.741 kb on + strand, within ABZR87_RS04170 at 873.742 kb on - strand, within ABZR87_RS04170 at 873.742 kb on - strand, within ABZR87_RS04170 at 873.744 kb on + strand, within ABZR87_RS04170 at 873.744 kb on + strand, within ABZR87_RS04170 at 873.745 kb on - strand, within ABZR87_RS04170 at 873.745 kb on - strand, within ABZR87_RS04170 at 873.849 kb on + strand, within ABZR87_RS04170 at 873.849 kb on + strand, within ABZR87_RS04170 at 873.849 kb on + strand, within ABZR87_RS04170 at 873.849 kb on + strand, within ABZR87_RS04170 at 873.850 kb on - strand, within ABZR87_RS04170 at 873.850 kb on - strand, within ABZR87_RS04170 at 873.850 kb on - strand, within ABZR87_RS04170 at 874.024 kb on - strand, within ABZR87_RS04170 at 874.024 kb on - strand, within ABZR87_RS04170 at 874.117 kb on - strand at 874.158 kb on + strand at 874.159 kb on - strand at 874.216 kb on + strand at 874.217 kb on - strand at 874.217 kb on - strand at 874.270 kb on + strand at 874.270 kb on + strand at 874.270 kb on + strand at 874.270 kb on + strand at 874.271 kb on - strand at 874.271 kb on - strand at 874.305 kb on + strand, within ABZR87_RS04175 at 874.306 kb on - strand, within ABZR87_RS04175 at 874.306 kb on - strand, within ABZR87_RS04175 at 874.306 kb on - strand, within ABZR87_RS04175 at 874.306 kb on - strand, within ABZR87_RS04175 at 874.306 kb on - strand, within ABZR87_RS04175 at 874.344 kb on + strand, within ABZR87_RS04175 at 874.344 kb on + strand, within ABZR87_RS04175 at 874.344 kb on + strand, within ABZR87_RS04175 at 874.344 kb on + strand, within ABZR87_RS04175 at 874.344 kb on + strand, within ABZR87_RS04175 at 874.344 kb on + strand, within ABZR87_RS04175 at 874.344 kb on + strand, within ABZR87_RS04175 at 874.344 kb on + strand, within ABZR87_RS04175 at 874.344 kb on + strand, within ABZR87_RS04175 at 874.345 kb on - strand, within ABZR87_RS04175 at 874.345 kb on - strand, within ABZR87_RS04175 at 874.345 kb on - strand, within ABZR87_RS04175 at 874.345 kb on - strand, within ABZR87_RS04175 at 874.345 kb on - strand, within ABZR87_RS04175 at 874.345 kb on - strand, within ABZR87_RS04175 at 874.345 kb on - strand, within ABZR87_RS04175 at 874.423 kb on - strand, within ABZR87_RS04175 at 874.423 kb on - strand, within ABZR87_RS04175
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 3; outgrowth in LB remove 871,590 + +0.9 871,590 + +0.2 871,590 + -0.7 871,590 + -0.5 871,590 + +0.1 871,590 + -0.0 871,590 + -0.2 871,590 + -0.8 871,590 + -0.7 871,591 - +0.9 871,591 - +0.4 871,591 - +1.9 871,885 - ABZR87_RS04160 0.35 +1.3 871,948 - ABZR87_RS04160 0.42 -0.1 871,948 - ABZR87_RS04160 0.42 -2.7 871,948 - ABZR87_RS04160 0.42 -0.9 872,107 - ABZR87_RS04160 0.59 +0.8 872,160 + ABZR87_RS04160 0.65 -2.4 872,439 + +0.9 872,440 - +0.6 872,440 - -0.7 872,470 + +0.4 872,481 - -0.0 872,617 - -1.2 872,924 + ABZR87_RS04165 0.36 -0.9 872,924 + ABZR87_RS04165 0.36 -0.1 872,924 + ABZR87_RS04165 0.36 +0.3 872,925 - ABZR87_RS04165 0.36 +0.9 872,925 - ABZR87_RS04165 0.36 -1.7 872,925 - ABZR87_RS04165 0.36 +1.2 872,925 - ABZR87_RS04165 0.36 -0.3 872,925 - ABZR87_RS04165 0.36 +0.6 872,925 - ABZR87_RS04165 0.36 +1.4 873,191 + ABZR87_RS04165 0.63 -0.6 873,191 + ABZR87_RS04165 0.63 +0.9 873,192 - ABZR87_RS04165 0.64 -1.2 873,192 - ABZR87_RS04165 0.64 -0.2 873,192 - ABZR87_RS04165 0.64 -1.8 873,192 - ABZR87_RS04165 0.64 -2.5 873,263 + ABZR87_RS04165 0.71 -1.4 873,264 - ABZR87_RS04165 0.71 -0.1 873,422 + ABZR87_RS04165 0.87 +0.8 873,422 + ABZR87_RS04165 0.87 -0.8 873,423 - ABZR87_RS04165 0.87 -0.4 873,423 - ABZR87_RS04165 0.87 +0.6 873,532 - -0.8 873,532 - +1.1 873,532 - -1.6 873,717 - ABZR87_RS04170 0.34 +0.6 873,741 + ABZR87_RS04170 0.38 +0.9 873,741 + ABZR87_RS04170 0.38 +2.4 873,741 + ABZR87_RS04170 0.38 +0.5 873,742 - ABZR87_RS04170 0.38 -1.6 873,742 - ABZR87_RS04170 0.38 +0.8 873,744 + ABZR87_RS04170 0.39 -1.8 873,744 + ABZR87_RS04170 0.39 -0.7 873,745 - ABZR87_RS04170 0.39 +0.1 873,745 - ABZR87_RS04170 0.39 -0.7 873,849 + ABZR87_RS04170 0.58 -0.2 873,849 + ABZR87_RS04170 0.58 +0.8 873,849 + ABZR87_RS04170 0.58 +1.7 873,849 + ABZR87_RS04170 0.58 -2.1 873,850 - ABZR87_RS04170 0.58 +0.2 873,850 - ABZR87_RS04170 0.58 -0.1 873,850 - ABZR87_RS04170 0.58 +0.2 874,024 - ABZR87_RS04170 0.89 -1.7 874,024 - ABZR87_RS04170 0.89 +2.0 874,117 - -1.4 874,158 + -2.0 874,159 - +2.1 874,216 + -2.6 874,217 - -0.1 874,217 - -0.3 874,270 + -1.7 874,270 + -0.8 874,270 + +1.2 874,270 + -0.7 874,271 - -0.2 874,271 - +0.1 874,305 + ABZR87_RS04175 0.14 +0.7 874,306 - ABZR87_RS04175 0.15 +1.1 874,306 - ABZR87_RS04175 0.15 -0.4 874,306 - ABZR87_RS04175 0.15 -0.4 874,306 - ABZR87_RS04175 0.15 +2.1 874,306 - ABZR87_RS04175 0.15 +1.0 874,344 + ABZR87_RS04175 0.25 +1.5 874,344 + ABZR87_RS04175 0.25 +1.2 874,344 + ABZR87_RS04175 0.25 -0.3 874,344 + ABZR87_RS04175 0.25 +1.8 874,344 + ABZR87_RS04175 0.25 -2.1 874,344 + ABZR87_RS04175 0.25 -1.2 874,344 + ABZR87_RS04175 0.25 +3.5 874,344 + ABZR87_RS04175 0.25 -0.8 874,344 + ABZR87_RS04175 0.25 -0.8 874,345 - ABZR87_RS04175 0.25 -0.5 874,345 - ABZR87_RS04175 0.25 -1.9 874,345 - ABZR87_RS04175 0.25 -0.8 874,345 - ABZR87_RS04175 0.25 -1.1 874,345 - ABZR87_RS04175 0.25 -1.0 874,345 - ABZR87_RS04175 0.25 +1.5 874,345 - ABZR87_RS04175 0.25 +0.1 874,423 - ABZR87_RS04175 0.46 +0.9 874,423 - ABZR87_RS04175 0.46 +0.6
Or see this region's nucleotide sequence