Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS03480

Experiment: rhizosphere sample 3; outgrowth in LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS03470 and ABZR87_RS03475 are separated by 3 nucleotidesABZR87_RS03475 and ABZR87_RS03480 overlap by 4 nucleotidesABZR87_RS03480 and ABZR87_RS03485 are separated by 154 nucleotidesABZR87_RS03485 and ABZR87_RS03490 are separated by 148 nucleotides ABZR87_RS03470: ABZR87_RS03470 - PLP-dependent aminotransferase family protein, at 725,632 to 727,101 _RS03470 ABZR87_RS03475: ABZR87_RS03475 - N-acetyltransferase, at 727,105 to 727,767 _RS03475 ABZR87_RS03480: ABZR87_RS03480 - hypothetical protein, at 727,764 to 728,627 _RS03480 ABZR87_RS03485: ABZR87_RS03485 - hypothetical protein, at 728,782 to 729,135 _RS03485 ABZR87_RS03490: ABZR87_RS03490 - indolepyruvate ferredoxin oxidoreductase family protein, at 729,284 to 732,844 _RS03490 Position (kb) 727 728 729Strain fitness (log2 ratio) -2 -1 0 1 2at 726.793 kb on + strand, within ABZR87_RS03470at 726.793 kb on + strand, within ABZR87_RS03470at 726.793 kb on + strand, within ABZR87_RS03470at 726.793 kb on + strand, within ABZR87_RS03470at 726.794 kb on - strand, within ABZR87_RS03470at 726.794 kb on - strand, within ABZR87_RS03470at 727.003 kb on + strandat 727.003 kb on + strandat 727.003 kb on + strandat 727.003 kb on + strandat 727.003 kb on + strandat 727.003 kb on + strandat 727.003 kb on + strandat 727.004 kb on - strandat 727.004 kb on - strandat 727.004 kb on - strandat 727.004 kb on - strandat 727.004 kb on - strandat 727.004 kb on - strandat 727.004 kb on - strandat 727.004 kb on - strandat 727.004 kb on - strandat 727.025 kb on - strandat 727.221 kb on - strand, within ABZR87_RS03475at 727.250 kb on + strand, within ABZR87_RS03475at 727.250 kb on + strand, within ABZR87_RS03475at 727.251 kb on - strand, within ABZR87_RS03475at 727.262 kb on + strand, within ABZR87_RS03475at 727.263 kb on - strand, within ABZR87_RS03475at 727.263 kb on - strand, within ABZR87_RS03475at 727.397 kb on + strand, within ABZR87_RS03475at 727.398 kb on - strand, within ABZR87_RS03475at 727.505 kb on + strand, within ABZR87_RS03475at 727.505 kb on + strand, within ABZR87_RS03475at 727.505 kb on + strand, within ABZR87_RS03475at 727.506 kb on - strand, within ABZR87_RS03475at 727.506 kb on - strand, within ABZR87_RS03475at 727.511 kb on + strand, within ABZR87_RS03475at 727.511 kb on + strand, within ABZR87_RS03475at 727.512 kb on - strand, within ABZR87_RS03475at 727.512 kb on - strand, within ABZR87_RS03475at 727.512 kb on - strand, within ABZR87_RS03475at 727.512 kb on - strand, within ABZR87_RS03475at 727.512 kb on - strand, within ABZR87_RS03475at 727.616 kb on + strand, within ABZR87_RS03475at 727.616 kb on + strand, within ABZR87_RS03475at 727.616 kb on + strand, within ABZR87_RS03475at 727.617 kb on - strand, within ABZR87_RS03475at 727.617 kb on - strand, within ABZR87_RS03475at 727.617 kb on - strand, within ABZR87_RS03475at 727.617 kb on - strand, within ABZR87_RS03475at 727.617 kb on - strand, within ABZR87_RS03475at 727.617 kb on - strand, within ABZR87_RS03475at 727.617 kb on - strand, within ABZR87_RS03475at 727.617 kb on - strand, within ABZR87_RS03475at 727.617 kb on - strand, within ABZR87_RS03475at 727.867 kb on + strand, within ABZR87_RS03480at 727.867 kb on + strand, within ABZR87_RS03480at 727.868 kb on - strand, within ABZR87_RS03480at 727.876 kb on + strand, within ABZR87_RS03480at 728.269 kb on + strand, within ABZR87_RS03480at 728.269 kb on + strand, within ABZR87_RS03480at 728.391 kb on + strand, within ABZR87_RS03480at 728.392 kb on - strand, within ABZR87_RS03480at 728.392 kb on - strand, within ABZR87_RS03480at 728.392 kb on - strand, within ABZR87_RS03480at 728.392 kb on - strand, within ABZR87_RS03480at 728.511 kb on + strand, within ABZR87_RS03480at 728.536 kb on + strand, within ABZR87_RS03480at 728.537 kb on - strand, within ABZR87_RS03480at 728.566 kb on + strandat 728.566 kb on + strandat 728.566 kb on + strandat 728.566 kb on + strandat 728.566 kb on + strandat 728.566 kb on + strandat 728.566 kb on + strandat 728.567 kb on - strandat 728.567 kb on - strandat 728.567 kb on - strandat 728.567 kb on - strandat 728.741 kb on - strandat 728.783 kb on + strandat 728.784 kb on - strandat 728.784 kb on - strandat 728.784 kb on - strandat 729.176 kb on + strandat 729.176 kb on + strandat 729.176 kb on + strandat 729.176 kb on + strandat 729.176 kb on + strandat 729.176 kb on + strandat 729.176 kb on + strandat 729.177 kb on - strandat 729.177 kb on - strandat 729.177 kb on - strandat 729.177 kb on - strandat 729.177 kb on - strandat 729.347 kb on + strandat 729.347 kb on + strandat 729.347 kb on + strandat 729.347 kb on + strandat 729.347 kb on + strandat 729.347 kb on + strandat 729.347 kb on + strandat 729.347 kb on + strandat 729.347 kb on + strandat 729.348 kb on - strandat 729.348 kb on - strandat 729.348 kb on - strandat 729.371 kb on + strandat 729.371 kb on + strandat 729.371 kb on + strandat 729.372 kb on - strandat 729.372 kb on - strandat 729.372 kb on - strandat 729.611 kb on + strandat 729.611 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 3; outgrowth in LB
remove
726,793 + ABZR87_RS03470 0.79 -2.2
726,793 + ABZR87_RS03470 0.79 +1.9
726,793 + ABZR87_RS03470 0.79 +2.0
726,793 + ABZR87_RS03470 0.79 +0.8
726,794 - ABZR87_RS03470 0.79 -0.7
726,794 - ABZR87_RS03470 0.79 -1.4
727,003 + -0.2
727,003 + +0.8
727,003 + +0.2
727,003 + +0.6
727,003 + -1.2
727,003 + +0.7
727,003 + +0.8
727,004 - -1.4
727,004 - +0.8
727,004 - -1.5
727,004 - +0.2
727,004 - -0.4
727,004 - -1.4
727,004 - +0.6
727,004 - -1.0
727,004 - +0.2
727,025 - -0.2
727,221 - ABZR87_RS03475 0.17 -0.3
727,250 + ABZR87_RS03475 0.22 +0.5
727,250 + ABZR87_RS03475 0.22 +0.1
727,251 - ABZR87_RS03475 0.22 +0.2
727,262 + ABZR87_RS03475 0.24 -0.3
727,263 - ABZR87_RS03475 0.24 -0.8
727,263 - ABZR87_RS03475 0.24 +0.7
727,397 + ABZR87_RS03475 0.44 -1.0
727,398 - ABZR87_RS03475 0.44 -1.0
727,505 + ABZR87_RS03475 0.60 -1.3
727,505 + ABZR87_RS03475 0.60 +0.5
727,505 + ABZR87_RS03475 0.60 -1.5
727,506 - ABZR87_RS03475 0.60 +1.4
727,506 - ABZR87_RS03475 0.60 +0.6
727,511 + ABZR87_RS03475 0.61 +0.6
727,511 + ABZR87_RS03475 0.61 -0.2
727,512 - ABZR87_RS03475 0.61 +0.5
727,512 - ABZR87_RS03475 0.61 -0.4
727,512 - ABZR87_RS03475 0.61 -0.0
727,512 - ABZR87_RS03475 0.61 -0.7
727,512 - ABZR87_RS03475 0.61 -0.8
727,616 + ABZR87_RS03475 0.77 +0.7
727,616 + ABZR87_RS03475 0.77 +0.0
727,616 + ABZR87_RS03475 0.77 -2.7
727,617 - ABZR87_RS03475 0.77 -0.6
727,617 - ABZR87_RS03475 0.77 +0.6
727,617 - ABZR87_RS03475 0.77 +2.4
727,617 - ABZR87_RS03475 0.77 +0.0
727,617 - ABZR87_RS03475 0.77 -0.9
727,617 - ABZR87_RS03475 0.77 +0.1
727,617 - ABZR87_RS03475 0.77 +0.1
727,617 - ABZR87_RS03475 0.77 +0.1
727,617 - ABZR87_RS03475 0.77 +0.5
727,867 + ABZR87_RS03480 0.12 -0.2
727,867 + ABZR87_RS03480 0.12 -1.2
727,868 - ABZR87_RS03480 0.12 -1.1
727,876 + ABZR87_RS03480 0.13 -2.2
728,269 + ABZR87_RS03480 0.58 -1.6
728,269 + ABZR87_RS03480 0.58 +1.4
728,391 + ABZR87_RS03480 0.73 -0.6
728,392 - ABZR87_RS03480 0.73 +0.9
728,392 - ABZR87_RS03480 0.73 -0.6
728,392 - ABZR87_RS03480 0.73 -0.5
728,392 - ABZR87_RS03480 0.73 -0.1
728,511 + ABZR87_RS03480 0.86 -0.3
728,536 + ABZR87_RS03480 0.89 -1.1
728,537 - ABZR87_RS03480 0.89 -0.8
728,566 + -1.2
728,566 + +0.2
728,566 + -1.6
728,566 + +0.0
728,566 + -1.6
728,566 + +0.0
728,566 + +1.0
728,567 - -2.3
728,567 - +0.9
728,567 - -2.1
728,567 - -1.0
728,741 - -0.9
728,783 + -0.5
728,784 - +2.1
728,784 - -1.0
728,784 - -1.9
729,176 + +1.9
729,176 + +0.4
729,176 + +0.8
729,176 + -1.6
729,176 + +0.6
729,176 + -0.9
729,176 + +0.3
729,177 - +0.4
729,177 - -2.0
729,177 - -0.4
729,177 - +1.1
729,177 - +0.7
729,347 + +0.1
729,347 + -0.5
729,347 + -0.7
729,347 + +0.5
729,347 + +1.2
729,347 + -1.9
729,347 + -0.7
729,347 + -0.2
729,347 + -0.3
729,348 - +1.9
729,348 - -0.1
729,348 - -0.6
729,371 + -1.6
729,371 + -1.4
729,371 + -0.4
729,372 - -0.2
729,372 - +0.2
729,372 - -1.4
729,611 + -1.3
729,611 + -1.2

Or see this region's nucleotide sequence