Experiment: rhizosphere sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS03160 and ABZR87_RS03165 are separated by 119 nucleotides ABZR87_RS03165 and ABZR87_RS03170 are separated by 41 nucleotides ABZR87_RS03170 and ABZR87_RS03175 are separated by 41 nucleotides ABZR87_RS03175 and ABZR87_RS03180 are separated by 335 nucleotides
ABZR87_RS03160: ABZR87_RS03160 - MFS transporter, at 665,275 to 666,528
_RS03160
ABZR87_RS03165: ABZR87_RS03165 - glutathione S-transferase, at 666,648 to 667,364
_RS03165
ABZR87_RS03170: ABZR87_RS03170 - hypothetical protein, at 667,406 to 667,795
_RS03170
ABZR87_RS03175: ABZR87_RS03175 - hypothetical protein, at 667,837 to 668,259
_RS03175
ABZR87_RS03180: ABZR87_RS03180 - hypothetical protein, at 668,595 to 668,822
_RS03180
Position (kb) 667
668 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 666.449 kb on + strand at 666.564 kb on + strand at 666.564 kb on + strand at 666.564 kb on + strand at 666.565 kb on - strand at 666.565 kb on - strand at 666.567 kb on + strand at 666.567 kb on + strand at 666.567 kb on + strand at 666.568 kb on - strand at 666.663 kb on + strand at 666.663 kb on + strand at 666.663 kb on + strand at 666.663 kb on + strand at 666.664 kb on - strand at 666.664 kb on - strand at 666.664 kb on - strand at 666.664 kb on - strand at 666.664 kb on - strand at 666.664 kb on - strand at 666.666 kb on + strand at 666.666 kb on + strand at 666.666 kb on + strand at 666.666 kb on + strand at 666.666 kb on + strand at 666.732 kb on + strand, within ABZR87_RS03165 at 666.732 kb on + strand, within ABZR87_RS03165 at 666.733 kb on - strand, within ABZR87_RS03165 at 666.733 kb on - strand, within ABZR87_RS03165 at 666.733 kb on - strand, within ABZR87_RS03165 at 666.734 kb on + strand, within ABZR87_RS03165 at 666.734 kb on + strand, within ABZR87_RS03165 at 666.734 kb on + strand, within ABZR87_RS03165 at 666.734 kb on + strand, within ABZR87_RS03165 at 666.735 kb on - strand, within ABZR87_RS03165 at 666.735 kb on - strand, within ABZR87_RS03165 at 666.870 kb on + strand, within ABZR87_RS03165 at 666.870 kb on + strand, within ABZR87_RS03165 at 666.870 kb on + strand, within ABZR87_RS03165 at 666.871 kb on - strand, within ABZR87_RS03165 at 666.871 kb on - strand, within ABZR87_RS03165 at 666.871 kb on - strand, within ABZR87_RS03165 at 666.871 kb on - strand, within ABZR87_RS03165 at 666.871 kb on - strand, within ABZR87_RS03165 at 667.003 kb on - strand, within ABZR87_RS03165 at 667.003 kb on - strand, within ABZR87_RS03165 at 667.005 kb on + strand, within ABZR87_RS03165 at 667.005 kb on + strand, within ABZR87_RS03165 at 667.005 kb on + strand, within ABZR87_RS03165 at 667.005 kb on + strand, within ABZR87_RS03165 at 667.006 kb on - strand, within ABZR87_RS03165 at 667.006 kb on - strand, within ABZR87_RS03165 at 667.006 kb on - strand, within ABZR87_RS03165 at 667.006 kb on - strand, within ABZR87_RS03165 at 667.080 kb on + strand, within ABZR87_RS03165 at 667.080 kb on + strand, within ABZR87_RS03165 at 667.080 kb on + strand, within ABZR87_RS03165 at 667.080 kb on + strand, within ABZR87_RS03165 at 667.080 kb on + strand, within ABZR87_RS03165 at 667.081 kb on - strand, within ABZR87_RS03165 at 667.081 kb on - strand, within ABZR87_RS03165 at 667.081 kb on - strand, within ABZR87_RS03165 at 667.081 kb on - strand, within ABZR87_RS03165 at 667.146 kb on + strand, within ABZR87_RS03165 at 667.146 kb on + strand, within ABZR87_RS03165 at 667.146 kb on + strand, within ABZR87_RS03165 at 667.146 kb on + strand, within ABZR87_RS03165 at 667.146 kb on + strand, within ABZR87_RS03165 at 667.146 kb on + strand, within ABZR87_RS03165 at 667.146 kb on + strand, within ABZR87_RS03165 at 667.146 kb on + strand, within ABZR87_RS03165 at 667.146 kb on + strand, within ABZR87_RS03165 at 667.146 kb on + strand, within ABZR87_RS03165 at 667.146 kb on + strand, within ABZR87_RS03165 at 667.146 kb on + strand, within ABZR87_RS03165 at 667.147 kb on - strand, within ABZR87_RS03165 at 667.147 kb on - strand, within ABZR87_RS03165 at 667.147 kb on - strand, within ABZR87_RS03165 at 667.147 kb on - strand, within ABZR87_RS03165 at 667.147 kb on - strand, within ABZR87_RS03165 at 667.147 kb on - strand, within ABZR87_RS03165 at 667.147 kb on - strand, within ABZR87_RS03165 at 667.147 kb on - strand, within ABZR87_RS03165 at 667.147 kb on - strand, within ABZR87_RS03165 at 667.215 kb on + strand, within ABZR87_RS03165 at 667.284 kb on + strand, within ABZR87_RS03165 at 667.424 kb on - strand at 667.451 kb on + strand, within ABZR87_RS03170 at 667.451 kb on + strand, within ABZR87_RS03170 at 667.629 kb on + strand, within ABZR87_RS03170 at 667.629 kb on + strand, within ABZR87_RS03170 at 667.629 kb on + strand, within ABZR87_RS03170 at 667.629 kb on + strand, within ABZR87_RS03170 at 667.629 kb on + strand, within ABZR87_RS03170 at 667.629 kb on + strand, within ABZR87_RS03170 at 667.629 kb on + strand, within ABZR87_RS03170 at 667.630 kb on - strand, within ABZR87_RS03170 at 667.630 kb on - strand, within ABZR87_RS03170 at 667.630 kb on - strand, within ABZR87_RS03170 at 667.630 kb on - strand, within ABZR87_RS03170 at 667.630 kb on - strand, within ABZR87_RS03170 at 667.630 kb on - strand, within ABZR87_RS03170 at 667.630 kb on - strand, within ABZR87_RS03170 at 667.810 kb on + strand at 667.810 kb on + strand at 667.845 kb on + strand at 667.846 kb on - strand at 668.033 kb on + strand, within ABZR87_RS03175 at 668.033 kb on + strand, within ABZR87_RS03175 at 668.033 kb on + strand, within ABZR87_RS03175 at 668.034 kb on - strand, within ABZR87_RS03175 at 668.034 kb on - strand, within ABZR87_RS03175 at 668.066 kb on + strand, within ABZR87_RS03175 at 668.066 kb on + strand, within ABZR87_RS03175 at 668.066 kb on + strand, within ABZR87_RS03175 at 668.067 kb on - strand, within ABZR87_RS03175 at 668.067 kb on - strand, within ABZR87_RS03175 at 668.067 kb on - strand, within ABZR87_RS03175 at 668.099 kb on + strand, within ABZR87_RS03175 at 668.100 kb on - strand, within ABZR87_RS03175 at 668.156 kb on + strand, within ABZR87_RS03175 at 668.156 kb on + strand, within ABZR87_RS03175 at 668.156 kb on + strand, within ABZR87_RS03175 at 668.156 kb on + strand, within ABZR87_RS03175 at 668.157 kb on - strand, within ABZR87_RS03175 at 668.225 kb on + strand at 668.226 kb on - strand at 668.226 kb on - strand at 668.246 kb on + strand at 668.246 kb on + strand at 668.246 kb on + strand at 668.246 kb on + strand at 668.246 kb on + strand at 668.246 kb on + strand at 668.246 kb on + strand at 668.247 kb on - strand at 668.247 kb on - strand at 668.247 kb on - strand at 668.247 kb on - strand at 668.247 kb on - strand at 668.247 kb on - strand at 668.364 kb on + strand at 668.364 kb on + strand at 668.364 kb on + strand at 668.364 kb on + strand at 668.364 kb on + strand at 668.365 kb on - strand at 668.365 kb on - strand at 668.365 kb on - strand at 668.365 kb on - strand at 668.365 kb on - strand at 668.365 kb on - strand at 668.365 kb on - strand at 668.365 kb on - strand at 668.365 kb on - strand at 668.415 kb on + strand at 668.415 kb on + strand at 668.415 kb on + strand at 668.415 kb on + strand at 668.415 kb on + strand at 668.415 kb on + strand at 668.416 kb on - strand at 668.416 kb on - strand at 668.426 kb on + strand at 668.426 kb on + strand at 668.480 kb on + strand at 668.480 kb on + strand at 668.481 kb on - strand at 668.518 kb on - strand at 668.583 kb on + strand at 668.596 kb on + strand at 668.596 kb on + strand at 668.596 kb on + strand at 668.596 kb on + strand at 668.597 kb on - strand at 668.597 kb on - strand at 668.597 kb on - strand at 668.674 kb on + strand, within ABZR87_RS03180 at 668.675 kb on - strand, within ABZR87_RS03180 at 668.675 kb on - strand, within ABZR87_RS03180
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 3; outgrowth in LB remove 666,449 + -0.8 666,564 + +1.4 666,564 + -0.2 666,564 + +2.0 666,565 - +0.9 666,565 - -1.0 666,567 + +0.5 666,567 + +1.9 666,567 + -1.4 666,568 - -1.8 666,663 + -0.7 666,663 + +1.6 666,663 + -1.7 666,663 + +0.5 666,664 - +0.3 666,664 - +0.1 666,664 - -0.9 666,664 - -0.1 666,664 - -1.8 666,664 - -0.5 666,666 + +0.3 666,666 + -2.3 666,666 + +0.2 666,666 + +1.3 666,666 + -0.0 666,732 + ABZR87_RS03165 0.12 +0.6 666,732 + ABZR87_RS03165 0.12 +0.2 666,733 - ABZR87_RS03165 0.12 -0.7 666,733 - ABZR87_RS03165 0.12 +0.3 666,733 - ABZR87_RS03165 0.12 +1.2 666,734 + ABZR87_RS03165 0.12 +0.9 666,734 + ABZR87_RS03165 0.12 -0.3 666,734 + ABZR87_RS03165 0.12 +1.0 666,734 + ABZR87_RS03165 0.12 -0.8 666,735 - ABZR87_RS03165 0.12 +0.1 666,735 - ABZR87_RS03165 0.12 -1.1 666,870 + ABZR87_RS03165 0.31 -1.9 666,870 + ABZR87_RS03165 0.31 -0.2 666,870 + ABZR87_RS03165 0.31 +0.4 666,871 - ABZR87_RS03165 0.31 -0.3 666,871 - ABZR87_RS03165 0.31 -0.8 666,871 - ABZR87_RS03165 0.31 +0.3 666,871 - ABZR87_RS03165 0.31 -0.3 666,871 - ABZR87_RS03165 0.31 -1.1 667,003 - ABZR87_RS03165 0.50 -0.4 667,003 - ABZR87_RS03165 0.50 -1.1 667,005 + ABZR87_RS03165 0.50 +2.1 667,005 + ABZR87_RS03165 0.50 -1.5 667,005 + ABZR87_RS03165 0.50 +0.4 667,005 + ABZR87_RS03165 0.50 -0.3 667,006 - ABZR87_RS03165 0.50 +0.5 667,006 - ABZR87_RS03165 0.50 +1.3 667,006 - ABZR87_RS03165 0.50 +0.6 667,006 - ABZR87_RS03165 0.50 -1.6 667,080 + ABZR87_RS03165 0.60 +0.5 667,080 + ABZR87_RS03165 0.60 -1.1 667,080 + ABZR87_RS03165 0.60 +1.0 667,080 + ABZR87_RS03165 0.60 -0.4 667,080 + ABZR87_RS03165 0.60 -2.1 667,081 - ABZR87_RS03165 0.60 +1.8 667,081 - ABZR87_RS03165 0.60 -1.3 667,081 - ABZR87_RS03165 0.60 +0.7 667,081 - ABZR87_RS03165 0.60 +0.2 667,146 + ABZR87_RS03165 0.69 -0.1 667,146 + ABZR87_RS03165 0.69 -0.0 667,146 + ABZR87_RS03165 0.69 +0.7 667,146 + ABZR87_RS03165 0.69 -1.0 667,146 + ABZR87_RS03165 0.69 -1.6 667,146 + ABZR87_RS03165 0.69 +1.4 667,146 + ABZR87_RS03165 0.69 -0.9 667,146 + ABZR87_RS03165 0.69 -0.4 667,146 + ABZR87_RS03165 0.69 -0.8 667,146 + ABZR87_RS03165 0.69 -1.5 667,146 + ABZR87_RS03165 0.69 +2.1 667,146 + ABZR87_RS03165 0.69 -0.8 667,147 - ABZR87_RS03165 0.70 +1.2 667,147 - ABZR87_RS03165 0.70 +0.6 667,147 - ABZR87_RS03165 0.70 +0.8 667,147 - ABZR87_RS03165 0.70 -0.1 667,147 - ABZR87_RS03165 0.70 -1.9 667,147 - ABZR87_RS03165 0.70 -1.3 667,147 - ABZR87_RS03165 0.70 -0.2 667,147 - ABZR87_RS03165 0.70 -1.8 667,147 - ABZR87_RS03165 0.70 +0.8 667,215 + ABZR87_RS03165 0.79 +0.9 667,284 + ABZR87_RS03165 0.89 -1.7 667,424 - +1.1 667,451 + ABZR87_RS03170 0.12 -1.0 667,451 + ABZR87_RS03170 0.12 -0.4 667,629 + ABZR87_RS03170 0.57 -0.4 667,629 + ABZR87_RS03170 0.57 -1.6 667,629 + ABZR87_RS03170 0.57 -0.4 667,629 + ABZR87_RS03170 0.57 -0.3 667,629 + ABZR87_RS03170 0.57 +0.5 667,629 + ABZR87_RS03170 0.57 +1.8 667,629 + ABZR87_RS03170 0.57 +1.0 667,630 - ABZR87_RS03170 0.57 +0.6 667,630 - ABZR87_RS03170 0.57 +1.7 667,630 - ABZR87_RS03170 0.57 +0.1 667,630 - ABZR87_RS03170 0.57 -0.7 667,630 - ABZR87_RS03170 0.57 -0.0 667,630 - ABZR87_RS03170 0.57 -0.6 667,630 - ABZR87_RS03170 0.57 -0.4 667,810 + +0.3 667,810 + -1.0 667,845 + +0.2 667,846 - +2.0 668,033 + ABZR87_RS03175 0.46 +0.1 668,033 + ABZR87_RS03175 0.46 -0.9 668,033 + ABZR87_RS03175 0.46 -0.3 668,034 - ABZR87_RS03175 0.47 +1.2 668,034 - ABZR87_RS03175 0.47 +1.2 668,066 + ABZR87_RS03175 0.54 -0.6 668,066 + ABZR87_RS03175 0.54 -1.1 668,066 + ABZR87_RS03175 0.54 +1.1 668,067 - ABZR87_RS03175 0.54 -1.9 668,067 - ABZR87_RS03175 0.54 +0.5 668,067 - ABZR87_RS03175 0.54 -1.6 668,099 + ABZR87_RS03175 0.62 +2.1 668,100 - ABZR87_RS03175 0.62 +1.0 668,156 + ABZR87_RS03175 0.75 +2.1 668,156 + ABZR87_RS03175 0.75 +0.6 668,156 + ABZR87_RS03175 0.75 -1.9 668,156 + ABZR87_RS03175 0.75 -0.7 668,157 - ABZR87_RS03175 0.76 +0.5 668,225 + +0.4 668,226 - -0.0 668,226 - -0.1 668,246 + +1.0 668,246 + -0.9 668,246 + +0.4 668,246 + -0.7 668,246 + -0.9 668,246 + -0.6 668,246 + +1.3 668,247 - +1.9 668,247 - +4.7 668,247 - +1.7 668,247 - -1.6 668,247 - +2.6 668,247 - -0.0 668,364 + +0.8 668,364 + -1.9 668,364 + -1.5 668,364 + +1.0 668,364 + +0.5 668,365 - +0.3 668,365 - -1.8 668,365 - -1.5 668,365 - +0.3 668,365 - -0.9 668,365 - +1.0 668,365 - +0.8 668,365 - -2.0 668,365 - +0.5 668,415 + +1.8 668,415 + -0.4 668,415 + -0.9 668,415 + +1.5 668,415 + +1.1 668,415 + -0.7 668,416 - +0.5 668,416 - -2.2 668,426 + +0.4 668,426 + +1.3 668,480 + +0.5 668,480 + -1.1 668,481 - -0.6 668,518 - -0.2 668,583 + +0.1 668,596 + -0.6 668,596 + -0.3 668,596 + -0.1 668,596 + -1.0 668,597 - -0.1 668,597 - +0.1 668,597 - -0.8 668,674 + ABZR87_RS03180 0.35 +0.8 668,675 - ABZR87_RS03180 0.35 +0.1 668,675 - ABZR87_RS03180 0.35 -0.2
Or see this region's nucleotide sequence