Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS03160

Experiment: rhizosphere sample 3; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS03155 and ABZR87_RS03160 are separated by 66 nucleotidesABZR87_RS03160 and ABZR87_RS03165 are separated by 119 nucleotidesABZR87_RS03165 and ABZR87_RS03170 are separated by 41 nucleotides ABZR87_RS03155: ABZR87_RS03155 - mechanosensitive ion channel family protein, at 662,935 to 665,208 _RS03155 ABZR87_RS03160: ABZR87_RS03160 - MFS transporter, at 665,275 to 666,528 _RS03160 ABZR87_RS03165: ABZR87_RS03165 - glutathione S-transferase, at 666,648 to 667,364 _RS03165 ABZR87_RS03170: ABZR87_RS03170 - hypothetical protein, at 667,406 to 667,795 _RS03170 Position (kb) 665 666 667Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 664.415 kb on + strand, within ABZR87_RS03155at 664.415 kb on + strand, within ABZR87_RS03155at 664.415 kb on + strand, within ABZR87_RS03155at 664.415 kb on + strand, within ABZR87_RS03155at 664.416 kb on - strand, within ABZR87_RS03155at 664.416 kb on - strand, within ABZR87_RS03155at 664.416 kb on - strand, within ABZR87_RS03155at 664.416 kb on - strand, within ABZR87_RS03155at 664.416 kb on - strand, within ABZR87_RS03155at 664.416 kb on - strand, within ABZR87_RS03155at 664.508 kb on + strand, within ABZR87_RS03155at 664.508 kb on + strand, within ABZR87_RS03155at 664.508 kb on + strand, within ABZR87_RS03155at 664.508 kb on + strand, within ABZR87_RS03155at 664.629 kb on + strand, within ABZR87_RS03155at 664.630 kb on - strand, within ABZR87_RS03155at 664.823 kb on + strand, within ABZR87_RS03155at 664.919 kb on - strand, within ABZR87_RS03155at 665.202 kb on + strandat 665.202 kb on + strandat 665.202 kb on + strandat 665.203 kb on - strandat 665.203 kb on - strandat 665.203 kb on - strandat 665.203 kb on - strandat 665.203 kb on - strandat 665.203 kb on - strandat 665.435 kb on + strand, within ABZR87_RS03160at 665.435 kb on + strand, within ABZR87_RS03160at 665.435 kb on + strand, within ABZR87_RS03160at 665.436 kb on - strand, within ABZR87_RS03160at 665.436 kb on - strand, within ABZR87_RS03160at 665.436 kb on - strand, within ABZR87_RS03160at 665.436 kb on - strand, within ABZR87_RS03160at 665.438 kb on + strand, within ABZR87_RS03160at 665.439 kb on - strand, within ABZR87_RS03160at 665.439 kb on - strand, within ABZR87_RS03160at 665.451 kb on - strand, within ABZR87_RS03160at 665.696 kb on + strand, within ABZR87_RS03160at 665.696 kb on + strand, within ABZR87_RS03160at 665.696 kb on + strand, within ABZR87_RS03160at 665.696 kb on + strand, within ABZR87_RS03160at 665.696 kb on + strand, within ABZR87_RS03160at 665.696 kb on + strand, within ABZR87_RS03160at 665.697 kb on - strand, within ABZR87_RS03160at 665.697 kb on - strand, within ABZR87_RS03160at 665.697 kb on - strand, within ABZR87_RS03160at 665.697 kb on - strand, within ABZR87_RS03160at 665.697 kb on - strand, within ABZR87_RS03160at 665.697 kb on - strand, within ABZR87_RS03160at 665.697 kb on - strand, within ABZR87_RS03160at 665.697 kb on - strand, within ABZR87_RS03160at 665.738 kb on + strand, within ABZR87_RS03160at 665.768 kb on + strand, within ABZR87_RS03160at 665.768 kb on + strand, within ABZR87_RS03160at 665.768 kb on + strand, within ABZR87_RS03160at 665.768 kb on + strand, within ABZR87_RS03160at 665.768 kb on + strand, within ABZR87_RS03160at 665.768 kb on + strand, within ABZR87_RS03160at 665.768 kb on + strand, within ABZR87_RS03160at 665.774 kb on + strand, within ABZR87_RS03160at 665.774 kb on + strand, within ABZR87_RS03160at 665.774 kb on + strand, within ABZR87_RS03160at 665.774 kb on + strand, within ABZR87_RS03160at 665.775 kb on - strand, within ABZR87_RS03160at 665.775 kb on - strand, within ABZR87_RS03160at 665.775 kb on - strand, within ABZR87_RS03160at 665.775 kb on - strand, within ABZR87_RS03160at 665.775 kb on - strand, within ABZR87_RS03160at 666.056 kb on + strand, within ABZR87_RS03160at 666.056 kb on + strand, within ABZR87_RS03160at 666.057 kb on - strand, within ABZR87_RS03160at 666.057 kb on - strand, within ABZR87_RS03160at 666.057 kb on - strand, within ABZR87_RS03160at 666.107 kb on + strand, within ABZR87_RS03160at 666.107 kb on + strand, within ABZR87_RS03160at 666.108 kb on - strand, within ABZR87_RS03160at 666.108 kb on - strand, within ABZR87_RS03160at 666.313 kb on + strand, within ABZR87_RS03160at 666.392 kb on + strand, within ABZR87_RS03160at 666.393 kb on - strand, within ABZR87_RS03160at 666.393 kb on - strand, within ABZR87_RS03160at 666.393 kb on - strand, within ABZR87_RS03160at 666.393 kb on - strand, within ABZR87_RS03160at 666.393 kb on - strand, within ABZR87_RS03160at 666.449 kb on + strandat 666.564 kb on + strandat 666.564 kb on + strandat 666.564 kb on + strandat 666.565 kb on - strandat 666.565 kb on - strandat 666.567 kb on + strandat 666.567 kb on + strandat 666.567 kb on + strandat 666.568 kb on - strandat 666.663 kb on + strandat 666.663 kb on + strandat 666.663 kb on + strandat 666.663 kb on + strandat 666.664 kb on - strandat 666.664 kb on - strandat 666.664 kb on - strandat 666.664 kb on - strandat 666.664 kb on - strandat 666.664 kb on - strandat 666.666 kb on + strandat 666.666 kb on + strandat 666.666 kb on + strandat 666.666 kb on + strandat 666.666 kb on + strandat 666.732 kb on + strand, within ABZR87_RS03165at 666.732 kb on + strand, within ABZR87_RS03165at 666.733 kb on - strand, within ABZR87_RS03165at 666.733 kb on - strand, within ABZR87_RS03165at 666.733 kb on - strand, within ABZR87_RS03165at 666.734 kb on + strand, within ABZR87_RS03165at 666.734 kb on + strand, within ABZR87_RS03165at 666.734 kb on + strand, within ABZR87_RS03165at 666.734 kb on + strand, within ABZR87_RS03165at 666.735 kb on - strand, within ABZR87_RS03165at 666.735 kb on - strand, within ABZR87_RS03165at 666.870 kb on + strand, within ABZR87_RS03165at 666.870 kb on + strand, within ABZR87_RS03165at 666.870 kb on + strand, within ABZR87_RS03165at 666.871 kb on - strand, within ABZR87_RS03165at 666.871 kb on - strand, within ABZR87_RS03165at 666.871 kb on - strand, within ABZR87_RS03165at 666.871 kb on - strand, within ABZR87_RS03165at 666.871 kb on - strand, within ABZR87_RS03165at 667.003 kb on - strand, within ABZR87_RS03165at 667.003 kb on - strand, within ABZR87_RS03165at 667.005 kb on + strand, within ABZR87_RS03165at 667.005 kb on + strand, within ABZR87_RS03165at 667.005 kb on + strand, within ABZR87_RS03165at 667.005 kb on + strand, within ABZR87_RS03165at 667.006 kb on - strand, within ABZR87_RS03165at 667.006 kb on - strand, within ABZR87_RS03165at 667.006 kb on - strand, within ABZR87_RS03165at 667.006 kb on - strand, within ABZR87_RS03165at 667.080 kb on + strand, within ABZR87_RS03165at 667.080 kb on + strand, within ABZR87_RS03165at 667.080 kb on + strand, within ABZR87_RS03165at 667.080 kb on + strand, within ABZR87_RS03165at 667.080 kb on + strand, within ABZR87_RS03165at 667.081 kb on - strand, within ABZR87_RS03165at 667.081 kb on - strand, within ABZR87_RS03165at 667.081 kb on - strand, within ABZR87_RS03165at 667.081 kb on - strand, within ABZR87_RS03165at 667.146 kb on + strand, within ABZR87_RS03165at 667.146 kb on + strand, within ABZR87_RS03165at 667.146 kb on + strand, within ABZR87_RS03165at 667.146 kb on + strand, within ABZR87_RS03165at 667.146 kb on + strand, within ABZR87_RS03165at 667.146 kb on + strand, within ABZR87_RS03165at 667.146 kb on + strand, within ABZR87_RS03165at 667.146 kb on + strand, within ABZR87_RS03165at 667.146 kb on + strand, within ABZR87_RS03165at 667.146 kb on + strand, within ABZR87_RS03165at 667.146 kb on + strand, within ABZR87_RS03165at 667.146 kb on + strand, within ABZR87_RS03165at 667.147 kb on - strand, within ABZR87_RS03165at 667.147 kb on - strand, within ABZR87_RS03165at 667.147 kb on - strand, within ABZR87_RS03165at 667.147 kb on - strand, within ABZR87_RS03165at 667.147 kb on - strand, within ABZR87_RS03165at 667.147 kb on - strand, within ABZR87_RS03165at 667.147 kb on - strand, within ABZR87_RS03165at 667.147 kb on - strand, within ABZR87_RS03165at 667.147 kb on - strand, within ABZR87_RS03165at 667.215 kb on + strand, within ABZR87_RS03165at 667.284 kb on + strand, within ABZR87_RS03165at 667.424 kb on - strandat 667.451 kb on + strand, within ABZR87_RS03170at 667.451 kb on + strand, within ABZR87_RS03170

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 3; outgrowth in LB
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664,415 + ABZR87_RS03155 0.65 -0.9
664,415 + ABZR87_RS03155 0.65 +0.3
664,415 + ABZR87_RS03155 0.65 +0.5
664,415 + ABZR87_RS03155 0.65 +1.5
664,416 - ABZR87_RS03155 0.65 +1.3
664,416 - ABZR87_RS03155 0.65 +0.4
664,416 - ABZR87_RS03155 0.65 -2.1
664,416 - ABZR87_RS03155 0.65 -0.3
664,416 - ABZR87_RS03155 0.65 -1.8
664,416 - ABZR87_RS03155 0.65 -0.5
664,508 + ABZR87_RS03155 0.69 -0.1
664,508 + ABZR87_RS03155 0.69 +0.5
664,508 + ABZR87_RS03155 0.69 -2.7
664,508 + ABZR87_RS03155 0.69 -3.2
664,629 + ABZR87_RS03155 0.74 -0.7
664,630 - ABZR87_RS03155 0.75 -0.4
664,823 + ABZR87_RS03155 0.83 +0.6
664,919 - ABZR87_RS03155 0.87 +0.5
665,202 + +0.7
665,202 + -0.1
665,202 + -1.8
665,203 - +0.9
665,203 - -1.0
665,203 - +0.9
665,203 - +0.2
665,203 - -0.1
665,203 - +1.5
665,435 + ABZR87_RS03160 0.13 +1.3
665,435 + ABZR87_RS03160 0.13 -0.1
665,435 + ABZR87_RS03160 0.13 -1.7
665,436 - ABZR87_RS03160 0.13 -1.4
665,436 - ABZR87_RS03160 0.13 -0.3
665,436 - ABZR87_RS03160 0.13 +0.2
665,436 - ABZR87_RS03160 0.13 -0.2
665,438 + ABZR87_RS03160 0.13 +2.0
665,439 - ABZR87_RS03160 0.13 -0.3
665,439 - ABZR87_RS03160 0.13 -1.9
665,451 - ABZR87_RS03160 0.14 +1.7
665,696 + ABZR87_RS03160 0.34 -0.6
665,696 + ABZR87_RS03160 0.34 +0.1
665,696 + ABZR87_RS03160 0.34 -0.6
665,696 + ABZR87_RS03160 0.34 -0.7
665,696 + ABZR87_RS03160 0.34 -1.8
665,696 + ABZR87_RS03160 0.34 -1.6
665,697 - ABZR87_RS03160 0.34 -0.9
665,697 - ABZR87_RS03160 0.34 +0.4
665,697 - ABZR87_RS03160 0.34 -0.9
665,697 - ABZR87_RS03160 0.34 +0.4
665,697 - ABZR87_RS03160 0.34 -1.0
665,697 - ABZR87_RS03160 0.34 -2.3
665,697 - ABZR87_RS03160 0.34 -1.1
665,697 - ABZR87_RS03160 0.34 +0.1
665,738 + ABZR87_RS03160 0.37 -0.9
665,768 + ABZR87_RS03160 0.39 -0.7
665,768 + ABZR87_RS03160 0.39 +0.8
665,768 + ABZR87_RS03160 0.39 +0.8
665,768 + ABZR87_RS03160 0.39 +0.3
665,768 + ABZR87_RS03160 0.39 -1.0
665,768 + ABZR87_RS03160 0.39 -0.4
665,768 + ABZR87_RS03160 0.39 +0.7
665,774 + ABZR87_RS03160 0.40 +0.7
665,774 + ABZR87_RS03160 0.40 +0.6
665,774 + ABZR87_RS03160 0.40 +0.0
665,774 + ABZR87_RS03160 0.40 +0.5
665,775 - ABZR87_RS03160 0.40 +0.7
665,775 - ABZR87_RS03160 0.40 +0.3
665,775 - ABZR87_RS03160 0.40 +0.5
665,775 - ABZR87_RS03160 0.40 -0.1
665,775 - ABZR87_RS03160 0.40 +0.2
666,056 + ABZR87_RS03160 0.62 +1.3
666,056 + ABZR87_RS03160 0.62 +0.6
666,057 - ABZR87_RS03160 0.62 -0.2
666,057 - ABZR87_RS03160 0.62 +0.4
666,057 - ABZR87_RS03160 0.62 +0.5
666,107 + ABZR87_RS03160 0.66 +0.1
666,107 + ABZR87_RS03160 0.66 -0.9
666,108 - ABZR87_RS03160 0.66 +0.9
666,108 - ABZR87_RS03160 0.66 +1.4
666,313 + ABZR87_RS03160 0.83 -1.6
666,392 + ABZR87_RS03160 0.89 +2.0
666,393 - ABZR87_RS03160 0.89 -0.7
666,393 - ABZR87_RS03160 0.89 +2.7
666,393 - ABZR87_RS03160 0.89 -0.8
666,393 - ABZR87_RS03160 0.89 +0.3
666,393 - ABZR87_RS03160 0.89 +1.3
666,449 + -0.8
666,564 + +1.4
666,564 + -0.2
666,564 + +2.0
666,565 - +0.9
666,565 - -1.0
666,567 + +0.5
666,567 + +1.9
666,567 + -1.4
666,568 - -1.8
666,663 + -0.7
666,663 + +1.6
666,663 + -1.7
666,663 + +0.5
666,664 - +0.3
666,664 - +0.1
666,664 - -0.9
666,664 - -0.1
666,664 - -1.8
666,664 - -0.5
666,666 + +0.3
666,666 + -2.3
666,666 + +0.2
666,666 + +1.3
666,666 + -0.0
666,732 + ABZR87_RS03165 0.12 +0.6
666,732 + ABZR87_RS03165 0.12 +0.2
666,733 - ABZR87_RS03165 0.12 -0.7
666,733 - ABZR87_RS03165 0.12 +0.3
666,733 - ABZR87_RS03165 0.12 +1.2
666,734 + ABZR87_RS03165 0.12 +0.9
666,734 + ABZR87_RS03165 0.12 -0.3
666,734 + ABZR87_RS03165 0.12 +1.0
666,734 + ABZR87_RS03165 0.12 -0.8
666,735 - ABZR87_RS03165 0.12 +0.1
666,735 - ABZR87_RS03165 0.12 -1.1
666,870 + ABZR87_RS03165 0.31 -1.9
666,870 + ABZR87_RS03165 0.31 -0.2
666,870 + ABZR87_RS03165 0.31 +0.4
666,871 - ABZR87_RS03165 0.31 -0.3
666,871 - ABZR87_RS03165 0.31 -0.8
666,871 - ABZR87_RS03165 0.31 +0.3
666,871 - ABZR87_RS03165 0.31 -0.3
666,871 - ABZR87_RS03165 0.31 -1.1
667,003 - ABZR87_RS03165 0.50 -0.4
667,003 - ABZR87_RS03165 0.50 -1.1
667,005 + ABZR87_RS03165 0.50 +2.1
667,005 + ABZR87_RS03165 0.50 -1.5
667,005 + ABZR87_RS03165 0.50 +0.4
667,005 + ABZR87_RS03165 0.50 -0.3
667,006 - ABZR87_RS03165 0.50 +0.5
667,006 - ABZR87_RS03165 0.50 +1.3
667,006 - ABZR87_RS03165 0.50 +0.6
667,006 - ABZR87_RS03165 0.50 -1.6
667,080 + ABZR87_RS03165 0.60 +0.5
667,080 + ABZR87_RS03165 0.60 -1.1
667,080 + ABZR87_RS03165 0.60 +1.0
667,080 + ABZR87_RS03165 0.60 -0.4
667,080 + ABZR87_RS03165 0.60 -2.1
667,081 - ABZR87_RS03165 0.60 +1.8
667,081 - ABZR87_RS03165 0.60 -1.3
667,081 - ABZR87_RS03165 0.60 +0.7
667,081 - ABZR87_RS03165 0.60 +0.2
667,146 + ABZR87_RS03165 0.69 -0.1
667,146 + ABZR87_RS03165 0.69 -0.0
667,146 + ABZR87_RS03165 0.69 +0.7
667,146 + ABZR87_RS03165 0.69 -1.0
667,146 + ABZR87_RS03165 0.69 -1.6
667,146 + ABZR87_RS03165 0.69 +1.4
667,146 + ABZR87_RS03165 0.69 -0.9
667,146 + ABZR87_RS03165 0.69 -0.4
667,146 + ABZR87_RS03165 0.69 -0.8
667,146 + ABZR87_RS03165 0.69 -1.5
667,146 + ABZR87_RS03165 0.69 +2.1
667,146 + ABZR87_RS03165 0.69 -0.8
667,147 - ABZR87_RS03165 0.70 +1.2
667,147 - ABZR87_RS03165 0.70 +0.6
667,147 - ABZR87_RS03165 0.70 +0.8
667,147 - ABZR87_RS03165 0.70 -0.1
667,147 - ABZR87_RS03165 0.70 -1.9
667,147 - ABZR87_RS03165 0.70 -1.3
667,147 - ABZR87_RS03165 0.70 -0.2
667,147 - ABZR87_RS03165 0.70 -1.8
667,147 - ABZR87_RS03165 0.70 +0.8
667,215 + ABZR87_RS03165 0.79 +0.9
667,284 + ABZR87_RS03165 0.89 -1.7
667,424 - +1.1
667,451 + ABZR87_RS03170 0.12 -1.0
667,451 + ABZR87_RS03170 0.12 -0.4

Or see this region's nucleotide sequence