Experiment: rhizosphere sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS03080 and ABZR87_RS03085 are separated by 665 nucleotides ABZR87_RS03085 and ABZR87_RS03090 are separated by 282 nucleotides
ABZR87_RS03080: ABZR87_RS03080 - MFS transporter, at 647,255 to 648,556
_RS03080
ABZR87_RS03085: ABZR87_RS03085 - ABC transporter substrate-binding protein, at 649,222 to 650,313
_RS03085
ABZR87_RS03090: ABZR87_RS03090 - helix-turn-helix transcriptional regulator, at 650,596 to 651,393
_RS03090
Position (kb) 649
650
651 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 648.278 kb on + strand, within ABZR87_RS03080 at 648.278 kb on + strand, within ABZR87_RS03080 at 648.278 kb on + strand, within ABZR87_RS03080 at 648.278 kb on + strand, within ABZR87_RS03080 at 648.279 kb on - strand, within ABZR87_RS03080 at 648.279 kb on - strand, within ABZR87_RS03080 at 648.279 kb on - strand, within ABZR87_RS03080 at 648.287 kb on + strand, within ABZR87_RS03080 at 648.287 kb on + strand, within ABZR87_RS03080 at 648.287 kb on + strand, within ABZR87_RS03080 at 648.287 kb on + strand, within ABZR87_RS03080 at 648.287 kb on + strand, within ABZR87_RS03080 at 648.288 kb on - strand, within ABZR87_RS03080 at 648.288 kb on - strand, within ABZR87_RS03080 at 648.288 kb on - strand, within ABZR87_RS03080 at 648.288 kb on - strand, within ABZR87_RS03080 at 648.288 kb on - strand, within ABZR87_RS03080 at 648.288 kb on - strand, within ABZR87_RS03080 at 648.289 kb on + strand, within ABZR87_RS03080 at 648.289 kb on + strand, within ABZR87_RS03080 at 648.290 kb on - strand, within ABZR87_RS03080 at 648.290 kb on - strand, within ABZR87_RS03080 at 648.362 kb on + strand, within ABZR87_RS03080 at 648.363 kb on - strand, within ABZR87_RS03080 at 648.363 kb on - strand, within ABZR87_RS03080 at 648.363 kb on - strand, within ABZR87_RS03080 at 648.363 kb on - strand, within ABZR87_RS03080 at 648.490 kb on + strand at 648.490 kb on + strand at 648.491 kb on - strand at 648.491 kb on - strand at 648.554 kb on + strand at 648.554 kb on + strand at 648.555 kb on - strand at 648.555 kb on - strand at 648.555 kb on - strand at 648.854 kb on + strand at 648.854 kb on + strand at 648.854 kb on + strand at 648.854 kb on + strand at 649.268 kb on + strand at 649.268 kb on + strand at 649.269 kb on - strand at 649.269 kb on - strand at 649.269 kb on - strand at 649.269 kb on - strand at 649.372 kb on - strand, within ABZR87_RS03085 at 649.372 kb on - strand, within ABZR87_RS03085 at 649.550 kb on + strand, within ABZR87_RS03085 at 649.551 kb on - strand, within ABZR87_RS03085 at 649.646 kb on + strand, within ABZR87_RS03085 at 649.749 kb on + strand, within ABZR87_RS03085 at 649.749 kb on + strand, within ABZR87_RS03085 at 649.790 kb on + strand, within ABZR87_RS03085 at 649.790 kb on + strand, within ABZR87_RS03085 at 649.790 kb on + strand, within ABZR87_RS03085 at 649.790 kb on + strand, within ABZR87_RS03085 at 649.791 kb on - strand, within ABZR87_RS03085 at 649.791 kb on - strand, within ABZR87_RS03085 at 649.850 kb on + strand, within ABZR87_RS03085 at 649.850 kb on + strand, within ABZR87_RS03085 at 649.851 kb on - strand, within ABZR87_RS03085 at 649.851 kb on - strand, within ABZR87_RS03085 at 649.919 kb on + strand, within ABZR87_RS03085 at 649.919 kb on + strand, within ABZR87_RS03085 at 649.920 kb on - strand, within ABZR87_RS03085 at 649.920 kb on - strand, within ABZR87_RS03085 at 649.920 kb on - strand, within ABZR87_RS03085 at 650.179 kb on + strand, within ABZR87_RS03085 at 650.179 kb on + strand, within ABZR87_RS03085 at 650.180 kb on - strand, within ABZR87_RS03085 at 650.180 kb on - strand, within ABZR87_RS03085 at 650.180 kb on - strand, within ABZR87_RS03085 at 650.180 kb on - strand, within ABZR87_RS03085 at 650.180 kb on - strand, within ABZR87_RS03085 at 650.180 kb on - strand, within ABZR87_RS03085 at 650.198 kb on + strand, within ABZR87_RS03085 at 650.198 kb on + strand, within ABZR87_RS03085 at 650.198 kb on + strand, within ABZR87_RS03085 at 650.198 kb on + strand, within ABZR87_RS03085 at 650.198 kb on + strand, within ABZR87_RS03085 at 650.198 kb on - strand, within ABZR87_RS03085 at 650.199 kb on - strand, within ABZR87_RS03085 at 650.298 kb on + strand at 650.298 kb on + strand at 650.298 kb on + strand at 650.298 kb on + strand at 650.298 kb on + strand at 650.299 kb on - strand at 650.299 kb on - strand at 650.481 kb on + strand at 650.481 kb on + strand at 650.481 kb on + strand at 650.482 kb on - strand at 650.482 kb on - strand at 650.482 kb on - strand at 650.482 kb on - strand at 650.482 kb on - strand at 650.562 kb on - strand at 650.562 kb on - strand at 650.562 kb on - strand at 650.668 kb on + strand at 650.668 kb on + strand at 650.668 kb on + strand at 650.668 kb on + strand at 650.668 kb on + strand at 650.669 kb on - strand at 650.669 kb on - strand at 650.734 kb on + strand, within ABZR87_RS03090 at 650.734 kb on + strand, within ABZR87_RS03090 at 650.734 kb on + strand, within ABZR87_RS03090 at 650.734 kb on + strand, within ABZR87_RS03090 at 650.735 kb on - strand, within ABZR87_RS03090 at 650.735 kb on - strand, within ABZR87_RS03090 at 650.735 kb on - strand, within ABZR87_RS03090 at 650.735 kb on - strand, within ABZR87_RS03090 at 650.735 kb on - strand, within ABZR87_RS03090 at 650.735 kb on - strand, within ABZR87_RS03090 at 650.736 kb on + strand, within ABZR87_RS03090 at 650.736 kb on + strand, within ABZR87_RS03090 at 650.737 kb on - strand, within ABZR87_RS03090 at 650.824 kb on + strand, within ABZR87_RS03090 at 650.862 kb on + strand, within ABZR87_RS03090 at 650.862 kb on + strand, within ABZR87_RS03090 at 650.862 kb on + strand, within ABZR87_RS03090 at 650.862 kb on + strand, within ABZR87_RS03090 at 650.863 kb on - strand, within ABZR87_RS03090 at 650.863 kb on - strand, within ABZR87_RS03090 at 650.863 kb on - strand, within ABZR87_RS03090 at 650.863 kb on - strand, within ABZR87_RS03090 at 650.869 kb on + strand, within ABZR87_RS03090 at 650.869 kb on + strand, within ABZR87_RS03090 at 650.869 kb on + strand, within ABZR87_RS03090 at 650.870 kb on - strand, within ABZR87_RS03090 at 650.870 kb on - strand, within ABZR87_RS03090 at 650.870 kb on - strand, within ABZR87_RS03090 at 650.870 kb on - strand, within ABZR87_RS03090 at 650.870 kb on - strand, within ABZR87_RS03090 at 650.870 kb on - strand, within ABZR87_RS03090 at 650.870 kb on - strand, within ABZR87_RS03090 at 650.870 kb on - strand, within ABZR87_RS03090 at 650.870 kb on - strand, within ABZR87_RS03090 at 650.870 kb on - strand, within ABZR87_RS03090 at 650.870 kb on - strand, within ABZR87_RS03090 at 651.298 kb on + strand, within ABZR87_RS03090 at 651.298 kb on + strand, within ABZR87_RS03090 at 651.299 kb on - strand, within ABZR87_RS03090 at 651.299 kb on - strand, within ABZR87_RS03090 at 651.299 kb on - strand, within ABZR87_RS03090 at 651.299 kb on - strand, within ABZR87_RS03090
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 3; outgrowth in LB remove 648,278 + ABZR87_RS03080 0.79 -1.4 648,278 + ABZR87_RS03080 0.79 -2.2 648,278 + ABZR87_RS03080 0.79 -1.5 648,278 + ABZR87_RS03080 0.79 +0.8 648,279 - ABZR87_RS03080 0.79 -2.4 648,279 - ABZR87_RS03080 0.79 +1.9 648,279 - ABZR87_RS03080 0.79 +1.5 648,287 + ABZR87_RS03080 0.79 -1.2 648,287 + ABZR87_RS03080 0.79 +0.5 648,287 + ABZR87_RS03080 0.79 -1.3 648,287 + ABZR87_RS03080 0.79 +0.1 648,287 + ABZR87_RS03080 0.79 -1.1 648,288 - ABZR87_RS03080 0.79 -0.4 648,288 - ABZR87_RS03080 0.79 -0.1 648,288 - ABZR87_RS03080 0.79 -0.9 648,288 - ABZR87_RS03080 0.79 +1.2 648,288 - ABZR87_RS03080 0.79 -1.5 648,288 - ABZR87_RS03080 0.79 -1.0 648,289 + ABZR87_RS03080 0.79 -0.1 648,289 + ABZR87_RS03080 0.79 -0.1 648,290 - ABZR87_RS03080 0.79 -1.9 648,290 - ABZR87_RS03080 0.79 +2.2 648,362 + ABZR87_RS03080 0.85 -0.9 648,363 - ABZR87_RS03080 0.85 -1.2 648,363 - ABZR87_RS03080 0.85 +2.1 648,363 - ABZR87_RS03080 0.85 -1.6 648,363 - ABZR87_RS03080 0.85 +1.0 648,490 + -0.4 648,490 + -1.0 648,491 - -0.8 648,491 - +0.1 648,554 + -1.2 648,554 + -0.1 648,555 - +0.7 648,555 - -0.5 648,555 - +0.5 648,854 + +0.3 648,854 + -0.4 648,854 + +0.5 648,854 + +1.0 649,268 + +2.8 649,268 + -1.3 649,269 - +0.5 649,269 - -1.2 649,269 - -0.1 649,269 - -0.8 649,372 - ABZR87_RS03085 0.14 +0.5 649,372 - ABZR87_RS03085 0.14 -0.1 649,550 + ABZR87_RS03085 0.30 +1.2 649,551 - ABZR87_RS03085 0.30 -1.9 649,646 + ABZR87_RS03085 0.39 -0.4 649,749 + ABZR87_RS03085 0.48 -0.5 649,749 + ABZR87_RS03085 0.48 -1.1 649,790 + ABZR87_RS03085 0.52 +1.3 649,790 + ABZR87_RS03085 0.52 +0.5 649,790 + ABZR87_RS03085 0.52 -0.2 649,790 + ABZR87_RS03085 0.52 +0.2 649,791 - ABZR87_RS03085 0.52 +0.9 649,791 - ABZR87_RS03085 0.52 -0.7 649,850 + ABZR87_RS03085 0.58 -0.4 649,850 + ABZR87_RS03085 0.58 -1.3 649,851 - ABZR87_RS03085 0.58 -1.5 649,851 - ABZR87_RS03085 0.58 -0.1 649,919 + ABZR87_RS03085 0.64 -0.6 649,919 + ABZR87_RS03085 0.64 +0.4 649,920 - ABZR87_RS03085 0.64 +1.6 649,920 - ABZR87_RS03085 0.64 -0.1 649,920 - ABZR87_RS03085 0.64 +1.2 650,179 + ABZR87_RS03085 0.88 +0.6 650,179 + ABZR87_RS03085 0.88 -0.9 650,180 - ABZR87_RS03085 0.88 -0.7 650,180 - ABZR87_RS03085 0.88 -0.9 650,180 - ABZR87_RS03085 0.88 -0.3 650,180 - ABZR87_RS03085 0.88 +1.6 650,180 - ABZR87_RS03085 0.88 +0.6 650,180 - ABZR87_RS03085 0.88 +1.1 650,198 + ABZR87_RS03085 0.89 -0.3 650,198 + ABZR87_RS03085 0.89 +3.7 650,198 + ABZR87_RS03085 0.89 +0.3 650,198 + ABZR87_RS03085 0.89 +0.1 650,198 + ABZR87_RS03085 0.89 +0.7 650,198 - ABZR87_RS03085 0.89 -2.9 650,199 - ABZR87_RS03085 0.89 +0.1 650,298 + -0.4 650,298 + -1.8 650,298 + -0.1 650,298 + +0.2 650,298 + +0.4 650,299 - +2.5 650,299 - -0.2 650,481 + +0.4 650,481 + +1.5 650,481 + +0.2 650,482 - +0.8 650,482 - -0.5 650,482 - +1.2 650,482 - -0.3 650,482 - -0.0 650,562 - +1.1 650,562 - -1.3 650,562 - -0.5 650,668 + -1.1 650,668 + +1.0 650,668 + -0.1 650,668 + -0.4 650,668 + -1.4 650,669 - +0.9 650,669 - +1.4 650,734 + ABZR87_RS03090 0.17 -2.1 650,734 + ABZR87_RS03090 0.17 +1.3 650,734 + ABZR87_RS03090 0.17 +1.8 650,734 + ABZR87_RS03090 0.17 -0.1 650,735 - ABZR87_RS03090 0.17 -2.1 650,735 - ABZR87_RS03090 0.17 -0.2 650,735 - ABZR87_RS03090 0.17 +0.1 650,735 - ABZR87_RS03090 0.17 +1.0 650,735 - ABZR87_RS03090 0.17 +0.8 650,735 - ABZR87_RS03090 0.17 -2.0 650,736 + ABZR87_RS03090 0.18 -1.9 650,736 + ABZR87_RS03090 0.18 -1.7 650,737 - ABZR87_RS03090 0.18 -0.4 650,824 + ABZR87_RS03090 0.29 -0.4 650,862 + ABZR87_RS03090 0.33 -0.7 650,862 + ABZR87_RS03090 0.33 -0.6 650,862 + ABZR87_RS03090 0.33 -0.6 650,862 + ABZR87_RS03090 0.33 -0.6 650,863 - ABZR87_RS03090 0.33 +0.0 650,863 - ABZR87_RS03090 0.33 +2.4 650,863 - ABZR87_RS03090 0.33 -1.6 650,863 - ABZR87_RS03090 0.33 -1.7 650,869 + ABZR87_RS03090 0.34 +0.1 650,869 + ABZR87_RS03090 0.34 -1.3 650,869 + ABZR87_RS03090 0.34 +1.3 650,870 - ABZR87_RS03090 0.34 +0.7 650,870 - ABZR87_RS03090 0.34 -0.6 650,870 - ABZR87_RS03090 0.34 +0.9 650,870 - ABZR87_RS03090 0.34 -0.0 650,870 - ABZR87_RS03090 0.34 -1.1 650,870 - ABZR87_RS03090 0.34 +0.1 650,870 - ABZR87_RS03090 0.34 -0.6 650,870 - ABZR87_RS03090 0.34 -2.0 650,870 - ABZR87_RS03090 0.34 +0.7 650,870 - ABZR87_RS03090 0.34 -1.3 650,870 - ABZR87_RS03090 0.34 -0.3 651,298 + ABZR87_RS03090 0.88 +0.6 651,298 + ABZR87_RS03090 0.88 +0.3 651,299 - ABZR87_RS03090 0.88 -1.5 651,299 - ABZR87_RS03090 0.88 +1.8 651,299 - ABZR87_RS03090 0.88 -0.7 651,299 - ABZR87_RS03090 0.88 -1.0
Or see this region's nucleotide sequence