Experiment: rhizosphere sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS03070 and ABZR87_RS03075 are separated by 276 nucleotides ABZR87_RS03075 and ABZR87_RS03080 are separated by 8 nucleotides
ABZR87_RS03070: ABZR87_RS03070 - glucan biosynthesis protein, at 644,103 to 645,716
_RS03070
ABZR87_RS03075: ABZR87_RS03075 - AGE family epimerase/isomerase, at 645,993 to 647,246
_RS03075
ABZR87_RS03080: ABZR87_RS03080 - MFS transporter, at 647,255 to 648,556
_RS03080
Position (kb) 645
646
647
648 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7 at 645.029 kb on - strand, within ABZR87_RS03070 at 645.064 kb on + strand, within ABZR87_RS03070 at 645.064 kb on + strand, within ABZR87_RS03070 at 645.065 kb on - strand, within ABZR87_RS03070 at 645.077 kb on + strand, within ABZR87_RS03070 at 645.077 kb on + strand, within ABZR87_RS03070 at 645.077 kb on + strand, within ABZR87_RS03070 at 645.077 kb on + strand, within ABZR87_RS03070 at 645.078 kb on - strand, within ABZR87_RS03070 at 645.078 kb on - strand, within ABZR87_RS03070 at 645.184 kb on + strand, within ABZR87_RS03070 at 645.214 kb on + strand, within ABZR87_RS03070 at 645.215 kb on - strand, within ABZR87_RS03070 at 645.215 kb on - strand, within ABZR87_RS03070 at 645.331 kb on + strand, within ABZR87_RS03070 at 645.352 kb on + strand, within ABZR87_RS03070 at 645.352 kb on + strand, within ABZR87_RS03070 at 645.352 kb on + strand, within ABZR87_RS03070 at 645.353 kb on - strand, within ABZR87_RS03070 at 645.353 kb on - strand, within ABZR87_RS03070 at 645.353 kb on - strand, within ABZR87_RS03070 at 645.353 kb on - strand, within ABZR87_RS03070 at 645.353 kb on - strand, within ABZR87_RS03070 at 645.353 kb on - strand, within ABZR87_RS03070 at 645.353 kb on - strand, within ABZR87_RS03070 at 645.499 kb on + strand, within ABZR87_RS03070 at 645.500 kb on - strand, within ABZR87_RS03070 at 645.500 kb on - strand, within ABZR87_RS03070 at 645.500 kb on - strand, within ABZR87_RS03070 at 645.500 kb on - strand, within ABZR87_RS03070 at 645.897 kb on + strand at 645.897 kb on + strand at 645.897 kb on + strand at 645.897 kb on + strand at 645.897 kb on + strand at 645.897 kb on + strand at 645.898 kb on - strand at 645.898 kb on - strand at 645.898 kb on - strand at 645.898 kb on - strand at 645.898 kb on - strand at 645.898 kb on - strand at 645.904 kb on + strand at 645.904 kb on + strand at 645.904 kb on + strand at 645.904 kb on + strand at 645.904 kb on + strand at 645.904 kb on + strand at 645.904 kb on + strand at 645.904 kb on + strand at 645.904 kb on + strand at 645.904 kb on + strand at 645.904 kb on + strand at 645.904 kb on + strand at 645.904 kb on + strand at 645.904 kb on + strand at 645.905 kb on - strand at 645.905 kb on - strand at 645.905 kb on - strand at 645.905 kb on - strand at 645.905 kb on - strand at 645.905 kb on - strand at 645.905 kb on - strand at 645.905 kb on - strand at 645.905 kb on - strand at 645.905 kb on - strand at 645.905 kb on - strand at 645.905 kb on - strand at 645.908 kb on + strand at 645.908 kb on + strand at 645.908 kb on + strand at 645.908 kb on + strand at 645.908 kb on + strand at 645.908 kb on + strand at 645.908 kb on + strand at 645.908 kb on + strand at 645.908 kb on + strand at 645.908 kb on + strand at 645.908 kb on + strand at 645.908 kb on + strand at 645.909 kb on - strand at 645.909 kb on - strand at 645.909 kb on - strand at 645.909 kb on - strand at 645.909 kb on - strand at 645.909 kb on - strand at 645.909 kb on - strand at 645.909 kb on - strand at 645.909 kb on - strand at 645.909 kb on - strand at 645.909 kb on - strand at 645.917 kb on + strand at 645.918 kb on - strand at 645.935 kb on + strand at 645.935 kb on + strand at 645.936 kb on - strand at 645.936 kb on - strand at 645.936 kb on - strand at 645.954 kb on + strand at 645.954 kb on + strand at 645.955 kb on - strand at 646.087 kb on - strand at 646.087 kb on - strand at 646.089 kb on + strand at 646.089 kb on + strand at 646.089 kb on + strand at 646.089 kb on + strand at 646.090 kb on - strand at 646.090 kb on - strand at 646.090 kb on - strand at 646.152 kb on + strand, within ABZR87_RS03075 at 646.152 kb on + strand, within ABZR87_RS03075 at 646.153 kb on - strand, within ABZR87_RS03075 at 646.153 kb on - strand, within ABZR87_RS03075 at 646.236 kb on + strand, within ABZR87_RS03075 at 646.236 kb on + strand, within ABZR87_RS03075 at 646.236 kb on + strand, within ABZR87_RS03075 at 646.236 kb on + strand, within ABZR87_RS03075 at 646.237 kb on - strand, within ABZR87_RS03075 at 646.237 kb on - strand, within ABZR87_RS03075 at 646.237 kb on - strand, within ABZR87_RS03075 at 646.238 kb on + strand, within ABZR87_RS03075 at 646.238 kb on + strand, within ABZR87_RS03075 at 646.238 kb on + strand, within ABZR87_RS03075 at 646.238 kb on + strand, within ABZR87_RS03075 at 646.238 kb on + strand, within ABZR87_RS03075 at 646.238 kb on + strand, within ABZR87_RS03075 at 646.238 kb on + strand, within ABZR87_RS03075 at 646.238 kb on + strand, within ABZR87_RS03075 at 646.239 kb on - strand, within ABZR87_RS03075 at 646.239 kb on - strand, within ABZR87_RS03075 at 646.239 kb on - strand, within ABZR87_RS03075 at 646.239 kb on - strand, within ABZR87_RS03075 at 646.407 kb on + strand, within ABZR87_RS03075 at 646.407 kb on + strand, within ABZR87_RS03075 at 646.408 kb on - strand, within ABZR87_RS03075 at 646.624 kb on - strand, within ABZR87_RS03075 at 646.624 kb on - strand, within ABZR87_RS03075 at 646.624 kb on - strand, within ABZR87_RS03075 at 646.624 kb on - strand, within ABZR87_RS03075 at 646.716 kb on - strand, within ABZR87_RS03075 at 646.805 kb on - strand, within ABZR87_RS03075 at 646.815 kb on + strand, within ABZR87_RS03075 at 646.815 kb on + strand, within ABZR87_RS03075 at 646.816 kb on - strand, within ABZR87_RS03075 at 646.816 kb on - strand, within ABZR87_RS03075 at 646.816 kb on - strand, within ABZR87_RS03075 at 646.816 kb on - strand, within ABZR87_RS03075 at 646.816 kb on - strand, within ABZR87_RS03075 at 646.816 kb on - strand, within ABZR87_RS03075 at 646.844 kb on + strand, within ABZR87_RS03075 at 646.845 kb on - strand, within ABZR87_RS03075 at 647.166 kb on + strand at 647.166 kb on + strand at 647.166 kb on + strand at 647.167 kb on - strand at 647.185 kb on - strand at 647.228 kb on + strand at 647.228 kb on + strand at 647.229 kb on - strand at 647.229 kb on - strand at 647.260 kb on + strand at 647.260 kb on + strand at 647.260 kb on + strand at 647.260 kb on + strand at 647.260 kb on + strand at 647.260 kb on + strand at 647.260 kb on + strand at 647.261 kb on - strand at 647.261 kb on - strand at 647.261 kb on - strand at 647.261 kb on - strand at 647.261 kb on - strand at 647.261 kb on - strand at 647.261 kb on - strand at 647.261 kb on - strand at 647.261 kb on - strand at 647.261 kb on - strand at 647.261 kb on - strand at 647.330 kb on + strand at 647.330 kb on + strand at 647.330 kb on + strand at 647.330 kb on + strand at 647.330 kb on + strand at 647.330 kb on + strand at 647.331 kb on - strand at 647.331 kb on - strand at 647.331 kb on - strand at 647.331 kb on - strand at 647.345 kb on + strand at 647.345 kb on + strand at 647.345 kb on + strand at 647.345 kb on + strand at 647.346 kb on - strand at 647.346 kb on - strand at 647.346 kb on - strand at 647.346 kb on - strand at 647.346 kb on - strand at 647.354 kb on + strand at 647.354 kb on + strand at 647.354 kb on + strand at 647.355 kb on - strand at 647.355 kb on - strand at 647.355 kb on - strand at 647.355 kb on - strand at 647.355 kb on - strand at 647.355 kb on - strand at 647.355 kb on - strand at 647.480 kb on + strand, within ABZR87_RS03080 at 647.480 kb on + strand, within ABZR87_RS03080 at 647.481 kb on - strand, within ABZR87_RS03080 at 647.481 kb on - strand, within ABZR87_RS03080 at 647.481 kb on - strand, within ABZR87_RS03080 at 647.571 kb on - strand, within ABZR87_RS03080 at 647.571 kb on - strand, within ABZR87_RS03080 at 647.666 kb on + strand, within ABZR87_RS03080 at 647.667 kb on - strand, within ABZR87_RS03080 at 647.777 kb on + strand, within ABZR87_RS03080 at 647.777 kb on + strand, within ABZR87_RS03080 at 647.777 kb on + strand, within ABZR87_RS03080 at 647.777 kb on + strand, within ABZR87_RS03080 at 647.778 kb on - strand, within ABZR87_RS03080 at 647.778 kb on - strand, within ABZR87_RS03080 at 648.008 kb on + strand, within ABZR87_RS03080 at 648.008 kb on + strand, within ABZR87_RS03080 at 648.008 kb on + strand, within ABZR87_RS03080 at 648.008 kb on + strand, within ABZR87_RS03080 at 648.024 kb on - strand, within ABZR87_RS03080 at 648.024 kb on - strand, within ABZR87_RS03080 at 648.176 kb on - strand, within ABZR87_RS03080 at 648.176 kb on - strand, within ABZR87_RS03080 at 648.200 kb on + strand, within ABZR87_RS03080
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 3; outgrowth in LB remove 645,029 - ABZR87_RS03070 0.57 -2.2 645,064 + ABZR87_RS03070 0.60 +0.4 645,064 + ABZR87_RS03070 0.60 -0.6 645,065 - ABZR87_RS03070 0.60 -1.8 645,077 + ABZR87_RS03070 0.60 -0.6 645,077 + ABZR87_RS03070 0.60 -1.2 645,077 + ABZR87_RS03070 0.60 -1.2 645,077 + ABZR87_RS03070 0.60 +0.6 645,078 - ABZR87_RS03070 0.60 -0.1 645,078 - ABZR87_RS03070 0.60 -0.1 645,184 + ABZR87_RS03070 0.67 +1.3 645,214 + ABZR87_RS03070 0.69 +2.6 645,215 - ABZR87_RS03070 0.69 +0.7 645,215 - ABZR87_RS03070 0.69 -0.3 645,331 + ABZR87_RS03070 0.76 +0.5 645,352 + ABZR87_RS03070 0.77 +0.8 645,352 + ABZR87_RS03070 0.77 +1.1 645,352 + ABZR87_RS03070 0.77 -1.6 645,353 - ABZR87_RS03070 0.77 +0.2 645,353 - ABZR87_RS03070 0.77 -0.2 645,353 - ABZR87_RS03070 0.77 +0.2 645,353 - ABZR87_RS03070 0.77 +0.5 645,353 - ABZR87_RS03070 0.77 +0.6 645,353 - ABZR87_RS03070 0.77 -0.5 645,353 - ABZR87_RS03070 0.77 -0.7 645,499 + ABZR87_RS03070 0.86 +1.3 645,500 - ABZR87_RS03070 0.87 +0.2 645,500 - ABZR87_RS03070 0.87 -0.3 645,500 - ABZR87_RS03070 0.87 -0.3 645,500 - ABZR87_RS03070 0.87 +0.2 645,897 + +0.3 645,897 + -0.4 645,897 + -0.4 645,897 + +0.4 645,897 + +1.4 645,897 + -2.0 645,898 - +0.5 645,898 - +0.1 645,898 - +1.0 645,898 - +1.2 645,898 - -1.0 645,898 - -0.2 645,904 + +0.8 645,904 + +2.1 645,904 + +0.2 645,904 + +0.7 645,904 + +0.2 645,904 + +0.1 645,904 + -1.1 645,904 + -0.6 645,904 + -0.3 645,904 + -0.3 645,904 + -0.3 645,904 + -0.9 645,904 + -1.2 645,904 + -0.9 645,905 - -0.7 645,905 - -0.5 645,905 - +0.2 645,905 - +2.6 645,905 - +0.6 645,905 - +1.3 645,905 - -1.8 645,905 - -0.7 645,905 - -0.6 645,905 - -1.5 645,905 - -1.5 645,905 - -1.4 645,908 + -0.8 645,908 + +1.0 645,908 + -0.2 645,908 + +1.2 645,908 + -0.0 645,908 + -1.1 645,908 + +1.1 645,908 + -0.8 645,908 + +0.1 645,908 + +1.2 645,908 + -1.2 645,908 + -0.9 645,909 - -1.3 645,909 - +0.2 645,909 - +1.9 645,909 - +0.3 645,909 - -1.5 645,909 - -0.1 645,909 - +0.3 645,909 - +0.1 645,909 - +0.5 645,909 - +0.1 645,909 - +0.6 645,917 + -0.1 645,918 - +0.8 645,935 + +0.5 645,935 + -1.2 645,936 - -0.3 645,936 - +1.6 645,936 - +0.9 645,954 + -0.6 645,954 + +0.0 645,955 - +0.2 646,087 - +5.3 646,087 - +5.6 646,089 + +5.1 646,089 + +3.7 646,089 + +4.8 646,089 + +5.4 646,090 - +4.8 646,090 - +5.3 646,090 - +3.6 646,152 + ABZR87_RS03075 0.13 +5.4 646,152 + ABZR87_RS03075 0.13 +5.2 646,153 - ABZR87_RS03075 0.13 +4.4 646,153 - ABZR87_RS03075 0.13 +4.7 646,236 + ABZR87_RS03075 0.19 +4.9 646,236 + ABZR87_RS03075 0.19 +4.7 646,236 + ABZR87_RS03075 0.19 +4.9 646,236 + ABZR87_RS03075 0.19 +5.3 646,237 - ABZR87_RS03075 0.19 +6.8 646,237 - ABZR87_RS03075 0.19 +6.2 646,237 - ABZR87_RS03075 0.19 +7.3 646,238 + ABZR87_RS03075 0.20 +5.5 646,238 + ABZR87_RS03075 0.20 +5.5 646,238 + ABZR87_RS03075 0.20 +5.4 646,238 + ABZR87_RS03075 0.20 +4.7 646,238 + ABZR87_RS03075 0.20 +4.1 646,238 + ABZR87_RS03075 0.20 +4.4 646,238 + ABZR87_RS03075 0.20 +4.6 646,238 + ABZR87_RS03075 0.20 +4.9 646,239 - ABZR87_RS03075 0.20 +4.1 646,239 - ABZR87_RS03075 0.20 +5.5 646,239 - ABZR87_RS03075 0.20 +4.6 646,239 - ABZR87_RS03075 0.20 +5.0 646,407 + ABZR87_RS03075 0.33 +4.8 646,407 + ABZR87_RS03075 0.33 +4.9 646,408 - ABZR87_RS03075 0.33 +5.3 646,624 - ABZR87_RS03075 0.50 +5.2 646,624 - ABZR87_RS03075 0.50 +4.6 646,624 - ABZR87_RS03075 0.50 +5.2 646,624 - ABZR87_RS03075 0.50 +4.8 646,716 - ABZR87_RS03075 0.58 +5.4 646,805 - ABZR87_RS03075 0.65 +4.9 646,815 + ABZR87_RS03075 0.66 +5.0 646,815 + ABZR87_RS03075 0.66 +5.7 646,816 - ABZR87_RS03075 0.66 +5.2 646,816 - ABZR87_RS03075 0.66 +4.0 646,816 - ABZR87_RS03075 0.66 +4.6 646,816 - ABZR87_RS03075 0.66 +5.2 646,816 - ABZR87_RS03075 0.66 +5.3 646,816 - ABZR87_RS03075 0.66 +5.4 646,844 + ABZR87_RS03075 0.68 +6.0 646,845 - ABZR87_RS03075 0.68 +5.6 647,166 + +5.9 647,166 + +5.7 647,166 + +6.2 647,167 - +4.7 647,185 - +4.9 647,228 + +1.1 647,228 + -0.7 647,229 - +0.2 647,229 - +0.0 647,260 + -0.7 647,260 + -0.6 647,260 + -0.9 647,260 + +1.6 647,260 + +0.4 647,260 + -1.7 647,260 + -1.0 647,261 - +0.3 647,261 - -2.4 647,261 - -0.1 647,261 - -0.2 647,261 - +0.0 647,261 - -1.6 647,261 - -0.0 647,261 - +1.3 647,261 - +1.9 647,261 - +0.6 647,261 - +0.3 647,330 + +1.0 647,330 + +0.7 647,330 + -1.6 647,330 + +0.3 647,330 + +0.9 647,330 + +0.4 647,331 - +0.2 647,331 - -0.3 647,331 - +1.1 647,331 - +0.3 647,345 + -1.1 647,345 + +1.2 647,345 + -0.3 647,345 + -1.0 647,346 - -1.1 647,346 - -2.3 647,346 - -1.6 647,346 - +0.3 647,346 - -1.0 647,354 + -2.5 647,354 + -0.9 647,354 + +0.3 647,355 - -2.3 647,355 - +0.3 647,355 - -0.6 647,355 - -1.1 647,355 - +0.1 647,355 - +0.7 647,355 - +1.6 647,480 + ABZR87_RS03080 0.17 +1.4 647,480 + ABZR87_RS03080 0.17 +0.4 647,481 - ABZR87_RS03080 0.17 -0.2 647,481 - ABZR87_RS03080 0.17 +0.2 647,481 - ABZR87_RS03080 0.17 +0.6 647,571 - ABZR87_RS03080 0.24 -0.5 647,571 - ABZR87_RS03080 0.24 +2.4 647,666 + ABZR87_RS03080 0.32 +1.9 647,667 - ABZR87_RS03080 0.32 +0.3 647,777 + ABZR87_RS03080 0.40 -1.5 647,777 + ABZR87_RS03080 0.40 -0.1 647,777 + ABZR87_RS03080 0.40 +0.2 647,777 + ABZR87_RS03080 0.40 -0.7 647,778 - ABZR87_RS03080 0.40 +0.1 647,778 - ABZR87_RS03080 0.40 -0.0 648,008 + ABZR87_RS03080 0.58 -0.2 648,008 + ABZR87_RS03080 0.58 -0.1 648,008 + ABZR87_RS03080 0.58 -0.1 648,008 + ABZR87_RS03080 0.58 +1.6 648,024 - ABZR87_RS03080 0.59 -0.1 648,024 - ABZR87_RS03080 0.59 -0.1 648,176 - ABZR87_RS03080 0.71 -2.0 648,176 - ABZR87_RS03080 0.71 -0.3 648,200 + ABZR87_RS03080 0.73 +1.0
Or see this region's nucleotide sequence