Experiment: rhizosphere sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS02690 and ABZR87_RS02695 are separated by 0 nucleotides ABZR87_RS02695 and ABZR87_RS02700 are separated by 17 nucleotides ABZR87_RS02700 and ABZR87_RS02705 are separated by 157 nucleotides
ABZR87_RS02690: ABZR87_RS02690 - porphobilinogen synthase, at 571,780 to 572,775
_RS02690
ABZR87_RS02695: ABZR87_RS02695 - protein-disulfide reductase DsbD, at 572,776 to 574,608
_RS02695
ABZR87_RS02700: ABZR87_RS02700 - divalent-cation tolerance protein CutA, at 574,626 to 574,964
_RS02700
ABZR87_RS02705: ABZR87_RS02705 - 50S ribosomal protein L17, at 575,122 to 575,520
_RS02705
Position (kb) 572
573
574
575 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 574.561 kb on + strand at 574.561 kb on + strand at 574.561 kb on + strand at 574.561 kb on + strand at 574.561 kb on + strand at 574.562 kb on - strand at 574.562 kb on - strand at 574.562 kb on - strand at 574.609 kb on - strand at 574.670 kb on - strand, within ABZR87_RS02700 at 574.720 kb on + strand, within ABZR87_RS02700 at 574.720 kb on + strand, within ABZR87_RS02700 at 574.759 kb on + strand, within ABZR87_RS02700 at 574.828 kb on + strand, within ABZR87_RS02700 at 574.828 kb on + strand, within ABZR87_RS02700 at 574.828 kb on + strand, within ABZR87_RS02700 at 574.829 kb on - strand, within ABZR87_RS02700 at 574.829 kb on - strand, within ABZR87_RS02700 at 574.829 kb on - strand, within ABZR87_RS02700 at 574.829 kb on - strand, within ABZR87_RS02700 at 574.829 kb on - strand, within ABZR87_RS02700 at 574.923 kb on + strand, within ABZR87_RS02700 at 574.964 kb on + strand at 574.964 kb on + strand at 574.964 kb on + strand at 574.964 kb on + strand at 574.964 kb on + strand at 574.964 kb on + strand at 574.964 kb on + strand at 574.964 kb on + strand at 574.964 kb on + strand at 574.964 kb on + strand at 574.964 kb on + strand at 574.964 kb on + strand at 574.964 kb on + strand at 574.964 kb on + strand at 574.964 kb on + strand at 574.964 kb on + strand at 574.964 kb on + strand at 574.965 kb on - strand at 574.965 kb on - strand at 574.965 kb on - strand at 574.965 kb on - strand at 574.965 kb on - strand at 574.965 kb on - strand at 574.965 kb on - strand at 574.965 kb on - strand at 574.965 kb on - strand at 574.965 kb on - strand at 574.965 kb on - strand at 574.965 kb on - strand at 574.965 kb on - strand at 574.965 kb on - strand at 574.965 kb on - strand at 574.965 kb on - strand at 574.965 kb on - strand at 574.965 kb on - strand at 574.965 kb on - strand at 574.968 kb on + strand at 574.968 kb on + strand at 574.968 kb on + strand at 574.968 kb on + strand at 574.968 kb on + strand at 574.968 kb on + strand at 574.968 kb on + strand at 574.969 kb on - strand at 574.969 kb on - strand at 574.969 kb on - strand at 574.969 kb on - strand at 574.969 kb on - strand at 575.047 kb on + strand at 575.047 kb on + strand at 575.047 kb on + strand at 575.047 kb on + strand at 575.047 kb on + strand at 575.047 kb on + strand at 575.123 kb on + strand at 575.124 kb on - strand at 575.573 kb on - strand at 575.573 kb on - strand at 575.573 kb on - strand at 575.598 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 3; outgrowth in LB remove 574,561 + +0.2 574,561 + +2.4 574,561 + -0.1 574,561 + +1.9 574,561 + +0.2 574,562 - +1.2 574,562 - +0.1 574,562 - +3.3 574,609 - -0.2 574,670 - ABZR87_RS02700 0.13 +0.4 574,720 + ABZR87_RS02700 0.28 -0.3 574,720 + ABZR87_RS02700 0.28 +0.2 574,759 + ABZR87_RS02700 0.39 +0.8 574,828 + ABZR87_RS02700 0.60 -1.8 574,828 + ABZR87_RS02700 0.60 +0.7 574,828 + ABZR87_RS02700 0.60 -0.3 574,829 - ABZR87_RS02700 0.60 -1.4 574,829 - ABZR87_RS02700 0.60 +0.9 574,829 - ABZR87_RS02700 0.60 +0.5 574,829 - ABZR87_RS02700 0.60 -0.5 574,829 - ABZR87_RS02700 0.60 +0.4 574,923 + ABZR87_RS02700 0.88 +0.8 574,964 + +1.5 574,964 + +0.8 574,964 + -1.1 574,964 + -1.7 574,964 + -0.1 574,964 + -0.4 574,964 + +0.5 574,964 + +0.6 574,964 + -0.6 574,964 + -2.7 574,964 + +0.8 574,964 + -0.1 574,964 + -1.0 574,964 + +0.7 574,964 + -0.6 574,964 + -1.6 574,964 + +0.5 574,965 - +0.6 574,965 - -0.8 574,965 - -1.2 574,965 - +0.7 574,965 - -0.4 574,965 - -1.1 574,965 - +0.5 574,965 - -0.5 574,965 - -0.1 574,965 - -0.3 574,965 - -0.5 574,965 - +1.2 574,965 - -1.8 574,965 - -1.5 574,965 - -0.5 574,965 - -2.3 574,965 - +1.2 574,965 - +0.6 574,965 - +1.0 574,968 + -0.3 574,968 + +1.4 574,968 + +0.7 574,968 + +0.4 574,968 + -0.4 574,968 + +1.5 574,968 + +1.6 574,969 - +0.6 574,969 - -0.6 574,969 - -0.9 574,969 - +2.1 574,969 - +0.9 575,047 + -0.2 575,047 + +0.3 575,047 + +0.2 575,047 + -0.6 575,047 + +1.0 575,047 + +0.5 575,123 + +0.1 575,124 - -0.6 575,573 - +3.1 575,573 - -1.2 575,573 - -1.0 575,598 - -0.7
Or see this region's nucleotide sequence