Experiment: rhizosphere sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS02655 and ABZR87_RS02660 are separated by 8 nucleotides ABZR87_RS02660 and ABZR87_RS02665 are separated by 25 nucleotides ABZR87_RS02665 and ABZR87_RS02670 are separated by 108 nucleotides
ABZR87_RS02655: ABZR87_RS02655 - anti-sigma factor, at 564,484 to 565,344
_RS02655
ABZR87_RS02660: ABZR87_RS02660 - RNA polymerase sigma factor, at 565,353 to 565,934
_RS02660
ABZR87_RS02665: ABZR87_RS02665 - ATP-binding protein, at 565,960 to 566,388
_RS02665
ABZR87_RS02670: ABZR87_RS02670 - c-type cytochrome biogenesis protein CcsB, at 566,497 to 567,684
_RS02670
Position (kb) 565
566
567 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 565.256 kb on + strand, within ABZR87_RS02655 at 565.256 kb on + strand, within ABZR87_RS02655 at 565.256 kb on + strand, within ABZR87_RS02655 at 565.256 kb on + strand, within ABZR87_RS02655 at 565.256 kb on + strand, within ABZR87_RS02655 at 565.256 kb on + strand, within ABZR87_RS02655 at 565.256 kb on + strand, within ABZR87_RS02655 at 565.256 kb on + strand, within ABZR87_RS02655 at 565.256 kb on + strand, within ABZR87_RS02655 at 565.256 kb on + strand, within ABZR87_RS02655 at 565.257 kb on - strand, within ABZR87_RS02655 at 565.257 kb on - strand, within ABZR87_RS02655 at 565.257 kb on - strand, within ABZR87_RS02655 at 565.257 kb on - strand, within ABZR87_RS02655 at 565.304 kb on + strand at 565.304 kb on + strand at 565.304 kb on + strand at 565.304 kb on + strand at 565.304 kb on + strand at 565.304 kb on + strand at 565.305 kb on - strand at 565.323 kb on + strand at 565.323 kb on + strand at 565.324 kb on - strand at 565.324 kb on - strand at 565.520 kb on - strand, within ABZR87_RS02660 at 565.520 kb on - strand, within ABZR87_RS02660 at 565.551 kb on + strand, within ABZR87_RS02660 at 565.551 kb on + strand, within ABZR87_RS02660 at 565.552 kb on - strand, within ABZR87_RS02660 at 565.552 kb on - strand, within ABZR87_RS02660 at 565.934 kb on + strand at 565.934 kb on + strand at 565.934 kb on + strand at 565.934 kb on + strand at 565.935 kb on - strand at 565.935 kb on - strand at 565.935 kb on - strand at 565.935 kb on - strand at 565.961 kb on + strand at 565.961 kb on + strand at 566.039 kb on + strand, within ABZR87_RS02665 at 566.039 kb on + strand, within ABZR87_RS02665 at 566.040 kb on - strand, within ABZR87_RS02665 at 566.040 kb on - strand, within ABZR87_RS02665 at 566.099 kb on + strand, within ABZR87_RS02665 at 566.100 kb on - strand, within ABZR87_RS02665 at 566.100 kb on - strand, within ABZR87_RS02665 at 566.207 kb on + strand, within ABZR87_RS02665 at 566.207 kb on + strand, within ABZR87_RS02665 at 566.207 kb on + strand, within ABZR87_RS02665 at 566.208 kb on - strand, within ABZR87_RS02665 at 566.208 kb on - strand, within ABZR87_RS02665 at 566.208 kb on - strand, within ABZR87_RS02665 at 566.208 kb on - strand, within ABZR87_RS02665 at 566.208 kb on - strand, within ABZR87_RS02665 at 566.208 kb on - strand, within ABZR87_RS02665 at 566.439 kb on + strand at 566.439 kb on + strand at 566.460 kb on + strand at 566.460 kb on + strand at 566.461 kb on - strand at 566.498 kb on + strand at 566.498 kb on + strand at 566.498 kb on + strand at 566.499 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 3; outgrowth in LB remove 565,256 + ABZR87_RS02655 0.90 -0.4 565,256 + ABZR87_RS02655 0.90 +0.5 565,256 + ABZR87_RS02655 0.90 -3.1 565,256 + ABZR87_RS02655 0.90 -0.9 565,256 + ABZR87_RS02655 0.90 -3.5 565,256 + ABZR87_RS02655 0.90 -2.4 565,256 + ABZR87_RS02655 0.90 -0.2 565,256 + ABZR87_RS02655 0.90 -1.0 565,256 + ABZR87_RS02655 0.90 -3.9 565,256 + ABZR87_RS02655 0.90 -1.0 565,257 - ABZR87_RS02655 0.90 -0.4 565,257 - ABZR87_RS02655 0.90 +1.0 565,257 - ABZR87_RS02655 0.90 +0.4 565,257 - ABZR87_RS02655 0.90 +1.7 565,304 + -2.5 565,304 + -0.3 565,304 + +0.2 565,304 + -1.7 565,304 + -1.9 565,304 + -1.5 565,305 - +1.9 565,323 + -0.0 565,323 + +0.9 565,324 - -2.7 565,324 - -0.4 565,520 - ABZR87_RS02660 0.29 -0.3 565,520 - ABZR87_RS02660 0.29 -1.7 565,551 + ABZR87_RS02660 0.34 +1.0 565,551 + ABZR87_RS02660 0.34 +0.4 565,552 - ABZR87_RS02660 0.34 -0.5 565,552 - ABZR87_RS02660 0.34 -0.7 565,934 + -1.2 565,934 + +0.8 565,934 + +0.5 565,934 + +0.1 565,935 - -0.6 565,935 - -2.3 565,935 - -1.5 565,935 - +1.3 565,961 + -0.5 565,961 + +0.3 566,039 + ABZR87_RS02665 0.18 -0.5 566,039 + ABZR87_RS02665 0.18 +0.1 566,040 - ABZR87_RS02665 0.19 +0.7 566,040 - ABZR87_RS02665 0.19 -1.2 566,099 + ABZR87_RS02665 0.32 +1.5 566,100 - ABZR87_RS02665 0.33 +0.9 566,100 - ABZR87_RS02665 0.33 -0.0 566,207 + ABZR87_RS02665 0.58 -1.2 566,207 + ABZR87_RS02665 0.58 -2.0 566,207 + ABZR87_RS02665 0.58 +0.3 566,208 - ABZR87_RS02665 0.58 +1.4 566,208 - ABZR87_RS02665 0.58 -0.2 566,208 - ABZR87_RS02665 0.58 -0.5 566,208 - ABZR87_RS02665 0.58 +1.5 566,208 - ABZR87_RS02665 0.58 -0.2 566,208 - ABZR87_RS02665 0.58 +0.6 566,439 + +1.4 566,439 + +0.6 566,460 + -0.8 566,460 + +0.3 566,461 - -0.7 566,498 + -0.1 566,498 + -0.7 566,498 + +0.9 566,499 - -1.8
Or see this region's nucleotide sequence