Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS02605

Experiment: rhizosphere sample 3; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS02600 and ABZR87_RS02605 are separated by 2 nucleotidesABZR87_RS02605 and ABZR87_RS02610 overlap by 4 nucleotidesABZR87_RS02610 and ABZR87_RS02615 are separated by 2 nucleotides ABZR87_RS02600: ABZR87_RS02600 - temperature dependent type IV pilus secretin PilQ, at 552,608 to 554,764 _RS02600 ABZR87_RS02605: ABZR87_RS02605 - pilus assembly protein PilP, at 554,767 to 555,312 _RS02605 ABZR87_RS02610: ABZR87_RS02610 - type 4a pilus biogenesis protein PilO, at 555,309 to 555,968 _RS02610 ABZR87_RS02615: ABZR87_RS02615 - PilN domain-containing protein, at 555,971 to 556,603 _RS02615 Position (kb) 554 555 556Strain fitness (log2 ratio) -2 -1 0 1 2at 553.977 kb on + strand, within ABZR87_RS02600at 553.978 kb on - strand, within ABZR87_RS02600at 553.986 kb on + strand, within ABZR87_RS02600at 554.085 kb on + strand, within ABZR87_RS02600at 554.337 kb on + strand, within ABZR87_RS02600at 554.337 kb on + strand, within ABZR87_RS02600at 554.337 kb on + strand, within ABZR87_RS02600at 554.338 kb on - strand, within ABZR87_RS02600at 554.338 kb on - strand, within ABZR87_RS02600at 554.338 kb on - strand, within ABZR87_RS02600at 554.338 kb on - strand, within ABZR87_RS02600at 554.338 kb on - strand, within ABZR87_RS02600at 554.364 kb on + strand, within ABZR87_RS02600at 554.364 kb on + strand, within ABZR87_RS02600at 554.364 kb on + strand, within ABZR87_RS02600at 554.365 kb on - strand, within ABZR87_RS02600at 554.365 kb on - strand, within ABZR87_RS02600at 554.365 kb on - strand, within ABZR87_RS02600at 554.365 kb on - strand, within ABZR87_RS02600at 554.365 kb on - strand, within ABZR87_RS02600at 554.365 kb on - strand, within ABZR87_RS02600at 554.402 kb on - strand, within ABZR87_RS02600at 554.452 kb on - strand, within ABZR87_RS02600at 554.452 kb on - strand, within ABZR87_RS02600at 554.452 kb on - strand, within ABZR87_RS02600at 554.885 kb on + strand, within ABZR87_RS02605at 554.885 kb on + strand, within ABZR87_RS02605at 554.885 kb on + strand, within ABZR87_RS02605at 554.886 kb on - strand, within ABZR87_RS02605at 554.886 kb on - strand, within ABZR87_RS02605at 554.900 kb on + strand, within ABZR87_RS02605at 554.901 kb on - strand, within ABZR87_RS02605at 554.901 kb on - strand, within ABZR87_RS02605at 554.901 kb on - strand, within ABZR87_RS02605at 554.901 kb on - strand, within ABZR87_RS02605at 554.901 kb on - strand, within ABZR87_RS02605at 555.005 kb on + strand, within ABZR87_RS02605at 555.005 kb on + strand, within ABZR87_RS02605at 555.006 kb on - strand, within ABZR87_RS02605at 555.116 kb on + strand, within ABZR87_RS02605at 555.131 kb on + strand, within ABZR87_RS02605at 555.131 kb on + strand, within ABZR87_RS02605at 555.165 kb on + strand, within ABZR87_RS02605at 555.166 kb on - strand, within ABZR87_RS02605at 555.544 kb on + strand, within ABZR87_RS02610at 555.544 kb on + strand, within ABZR87_RS02610at 555.544 kb on + strand, within ABZR87_RS02610at 555.544 kb on + strand, within ABZR87_RS02610at 555.545 kb on - strand, within ABZR87_RS02610at 555.545 kb on - strand, within ABZR87_RS02610at 555.545 kb on - strand, within ABZR87_RS02610at 555.545 kb on - strand, within ABZR87_RS02610at 555.545 kb on - strand, within ABZR87_RS02610at 555.547 kb on + strand, within ABZR87_RS02610at 555.547 kb on + strand, within ABZR87_RS02610at 555.547 kb on + strand, within ABZR87_RS02610at 555.547 kb on + strand, within ABZR87_RS02610at 555.547 kb on + strand, within ABZR87_RS02610at 555.547 kb on + strand, within ABZR87_RS02610at 555.548 kb on - strand, within ABZR87_RS02610at 555.548 kb on - strand, within ABZR87_RS02610at 555.729 kb on + strand, within ABZR87_RS02610at 555.729 kb on + strand, within ABZR87_RS02610at 555.729 kb on + strand, within ABZR87_RS02610at 555.730 kb on - strand, within ABZR87_RS02610at 555.752 kb on - strand, within ABZR87_RS02610at 555.752 kb on - strand, within ABZR87_RS02610at 555.817 kb on + strand, within ABZR87_RS02610at 555.817 kb on + strand, within ABZR87_RS02610at 555.817 kb on + strand, within ABZR87_RS02610at 555.817 kb on + strand, within ABZR87_RS02610at 555.817 kb on + strand, within ABZR87_RS02610at 555.817 kb on + strand, within ABZR87_RS02610at 555.817 kb on + strand, within ABZR87_RS02610at 555.818 kb on - strand, within ABZR87_RS02610at 555.840 kb on + strand, within ABZR87_RS02610at 555.972 kb on + strandat 555.972 kb on + strandat 555.972 kb on + strandat 555.972 kb on + strandat 555.972 kb on + strandat 555.972 kb on + strandat 555.972 kb on + strandat 555.972 kb on + strandat 555.973 kb on - strandat 555.973 kb on - strandat 555.973 kb on - strandat 555.973 kb on - strandat 555.973 kb on - strandat 555.973 kb on - strandat 555.973 kb on - strandat 555.973 kb on - strandat 555.973 kb on - strandat 556.197 kb on + strand, within ABZR87_RS02615at 556.198 kb on - strand, within ABZR87_RS02615at 556.230 kb on + strand, within ABZR87_RS02615at 556.230 kb on + strand, within ABZR87_RS02615at 556.230 kb on + strand, within ABZR87_RS02615at 556.230 kb on + strand, within ABZR87_RS02615at 556.230 kb on + strand, within ABZR87_RS02615at 556.230 kb on + strand, within ABZR87_RS02615at 556.230 kb on + strand, within ABZR87_RS02615at 556.231 kb on - strand, within ABZR87_RS02615at 556.231 kb on - strand, within ABZR87_RS02615at 556.231 kb on - strand, within ABZR87_RS02615at 556.231 kb on - strand, within ABZR87_RS02615at 556.231 kb on - strand, within ABZR87_RS02615at 556.231 kb on - strand, within ABZR87_RS02615at 556.231 kb on - strand, within ABZR87_RS02615

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 3; outgrowth in LB
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553,977 + ABZR87_RS02600 0.63 +0.5
553,978 - ABZR87_RS02600 0.64 +0.2
553,986 + ABZR87_RS02600 0.64 +0.8
554,085 + ABZR87_RS02600 0.68 -0.4
554,337 + ABZR87_RS02600 0.80 -0.2
554,337 + ABZR87_RS02600 0.80 -0.9
554,337 + ABZR87_RS02600 0.80 -0.1
554,338 - ABZR87_RS02600 0.80 +0.8
554,338 - ABZR87_RS02600 0.80 +1.2
554,338 - ABZR87_RS02600 0.80 -0.8
554,338 - ABZR87_RS02600 0.80 +1.0
554,338 - ABZR87_RS02600 0.80 -0.9
554,364 + ABZR87_RS02600 0.81 -1.6
554,364 + ABZR87_RS02600 0.81 +1.7
554,364 + ABZR87_RS02600 0.81 +0.8
554,365 - ABZR87_RS02600 0.81 -0.3
554,365 - ABZR87_RS02600 0.81 -0.3
554,365 - ABZR87_RS02600 0.81 +0.8
554,365 - ABZR87_RS02600 0.81 -0.6
554,365 - ABZR87_RS02600 0.81 -1.0
554,365 - ABZR87_RS02600 0.81 -0.6
554,402 - ABZR87_RS02600 0.83 +1.7
554,452 - ABZR87_RS02600 0.85 +0.2
554,452 - ABZR87_RS02600 0.85 -1.9
554,452 - ABZR87_RS02600 0.85 -0.4
554,885 + ABZR87_RS02605 0.22 -0.5
554,885 + ABZR87_RS02605 0.22 +1.0
554,885 + ABZR87_RS02605 0.22 +0.5
554,886 - ABZR87_RS02605 0.22 -1.6
554,886 - ABZR87_RS02605 0.22 +0.0
554,900 + ABZR87_RS02605 0.24 +0.3
554,901 - ABZR87_RS02605 0.25 +1.7
554,901 - ABZR87_RS02605 0.25 +0.5
554,901 - ABZR87_RS02605 0.25 -0.8
554,901 - ABZR87_RS02605 0.25 +0.2
554,901 - ABZR87_RS02605 0.25 +0.2
555,005 + ABZR87_RS02605 0.44 -0.9
555,005 + ABZR87_RS02605 0.44 -0.6
555,006 - ABZR87_RS02605 0.44 -0.7
555,116 + ABZR87_RS02605 0.64 -0.7
555,131 + ABZR87_RS02605 0.67 +1.1
555,131 + ABZR87_RS02605 0.67 -0.4
555,165 + ABZR87_RS02605 0.73 +0.9
555,166 - ABZR87_RS02605 0.73 +1.1
555,544 + ABZR87_RS02610 0.36 +1.3
555,544 + ABZR87_RS02610 0.36 -0.8
555,544 + ABZR87_RS02610 0.36 +0.1
555,544 + ABZR87_RS02610 0.36 -0.3
555,545 - ABZR87_RS02610 0.36 +0.4
555,545 - ABZR87_RS02610 0.36 +0.4
555,545 - ABZR87_RS02610 0.36 -1.7
555,545 - ABZR87_RS02610 0.36 -1.4
555,545 - ABZR87_RS02610 0.36 +0.3
555,547 + ABZR87_RS02610 0.36 +1.2
555,547 + ABZR87_RS02610 0.36 +0.3
555,547 + ABZR87_RS02610 0.36 -0.1
555,547 + ABZR87_RS02610 0.36 +0.1
555,547 + ABZR87_RS02610 0.36 +0.8
555,547 + ABZR87_RS02610 0.36 +2.4
555,548 - ABZR87_RS02610 0.36 +1.0
555,548 - ABZR87_RS02610 0.36 -1.3
555,729 + ABZR87_RS02610 0.64 -0.9
555,729 + ABZR87_RS02610 0.64 -0.7
555,729 + ABZR87_RS02610 0.64 -2.6
555,730 - ABZR87_RS02610 0.64 +0.9
555,752 - ABZR87_RS02610 0.67 -1.0
555,752 - ABZR87_RS02610 0.67 -2.1
555,817 + ABZR87_RS02610 0.77 -0.4
555,817 + ABZR87_RS02610 0.77 +1.6
555,817 + ABZR87_RS02610 0.77 +1.0
555,817 + ABZR87_RS02610 0.77 +0.4
555,817 + ABZR87_RS02610 0.77 +0.7
555,817 + ABZR87_RS02610 0.77 -0.8
555,817 + ABZR87_RS02610 0.77 +1.7
555,818 - ABZR87_RS02610 0.77 -0.7
555,840 + ABZR87_RS02610 0.80 +0.6
555,972 + +0.8
555,972 + +1.7
555,972 + -1.8
555,972 + +0.1
555,972 + +2.4
555,972 + -2.2
555,972 + -1.5
555,972 + +0.6
555,973 - -0.1
555,973 - +0.7
555,973 - +0.5
555,973 - +0.3
555,973 - -1.3
555,973 - -0.1
555,973 - -0.6
555,973 - -0.6
555,973 - -0.3
556,197 + ABZR87_RS02615 0.36 -0.3
556,198 - ABZR87_RS02615 0.36 +1.2
556,230 + ABZR87_RS02615 0.41 -0.2
556,230 + ABZR87_RS02615 0.41 +1.4
556,230 + ABZR87_RS02615 0.41 +0.3
556,230 + ABZR87_RS02615 0.41 -0.2
556,230 + ABZR87_RS02615 0.41 +0.4
556,230 + ABZR87_RS02615 0.41 +1.0
556,230 + ABZR87_RS02615 0.41 -1.0
556,231 - ABZR87_RS02615 0.41 -0.4
556,231 - ABZR87_RS02615 0.41 +1.1
556,231 - ABZR87_RS02615 0.41 +2.1
556,231 - ABZR87_RS02615 0.41 -1.4
556,231 - ABZR87_RS02615 0.41 -2.2
556,231 - ABZR87_RS02615 0.41 -0.3
556,231 - ABZR87_RS02615 0.41 -0.7

Or see this region's nucleotide sequence