Experiment: rhizosphere sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01060 and ABZR87_RS01065 are separated by 10 nucleotides ABZR87_RS01065 and ABZR87_RS01070 are separated by 102 nucleotides ABZR87_RS01070 and ABZR87_RS01075 are separated by 261 nucleotides
ABZR87_RS01060: ABZR87_RS01060 - NAD kinase, at 212,007 to 212,945
_RS01060
ABZR87_RS01065: ABZR87_RS01065 - DNA repair protein RecN, at 212,956 to 214,662
_RS01065
ABZR87_RS01070: ABZR87_RS01070 - hypothetical protein, at 214,765 to 215,211
_RS01070
ABZR87_RS01075: ABZR87_RS01075 - MprA protease, GlyGly-CTERM protein-sorting domain-containing form, at 215,473 to 217,122
_RS01075
Position (kb) 212
213
214
215 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 211.984 kb on + strand at 211.985 kb on - strand at 211.985 kb on - strand at 211.987 kb on - strand at 211.988 kb on + strand at 211.991 kb on - strand at 211.997 kb on + strand at 211.997 kb on + strand at 211.997 kb on + strand at 211.997 kb on + strand at 212.943 kb on + strand at 212.944 kb on - strand at 212.944 kb on - strand at 213.027 kb on + strand at 213.028 kb on - strand at 213.028 kb on - strand at 213.032 kb on + strand at 213.188 kb on + strand, within ABZR87_RS01065 at 213.581 kb on + strand, within ABZR87_RS01065 at 213.582 kb on - strand, within ABZR87_RS01065 at 213.582 kb on - strand, within ABZR87_RS01065 at 213.582 kb on - strand, within ABZR87_RS01065 at 213.702 kb on + strand, within ABZR87_RS01065 at 213.702 kb on + strand, within ABZR87_RS01065 at 213.703 kb on - strand, within ABZR87_RS01065 at 213.703 kb on - strand, within ABZR87_RS01065 at 213.703 kb on - strand, within ABZR87_RS01065 at 213.808 kb on + strand, within ABZR87_RS01065 at 213.809 kb on - strand, within ABZR87_RS01065 at 214.015 kb on + strand, within ABZR87_RS01065 at 214.015 kb on + strand, within ABZR87_RS01065 at 214.015 kb on + strand, within ABZR87_RS01065 at 214.015 kb on + strand, within ABZR87_RS01065 at 214.015 kb on + strand, within ABZR87_RS01065 at 214.015 kb on + strand, within ABZR87_RS01065 at 214.016 kb on - strand, within ABZR87_RS01065 at 214.016 kb on - strand, within ABZR87_RS01065 at 214.016 kb on - strand, within ABZR87_RS01065 at 214.016 kb on - strand, within ABZR87_RS01065 at 214.016 kb on - strand, within ABZR87_RS01065 at 214.016 kb on - strand, within ABZR87_RS01065 at 214.016 kb on - strand, within ABZR87_RS01065 at 214.016 kb on - strand, within ABZR87_RS01065 at 214.017 kb on + strand, within ABZR87_RS01065 at 214.018 kb on - strand, within ABZR87_RS01065 at 214.018 kb on - strand, within ABZR87_RS01065 at 214.018 kb on - strand, within ABZR87_RS01065 at 214.018 kb on - strand, within ABZR87_RS01065 at 214.018 kb on - strand, within ABZR87_RS01065 at 214.669 kb on - strand at 214.669 kb on - strand at 214.669 kb on - strand at 214.734 kb on + strand at 214.734 kb on + strand at 214.915 kb on - strand, within ABZR87_RS01070 at 215.066 kb on + strand, within ABZR87_RS01070 at 215.066 kb on + strand, within ABZR87_RS01070 at 215.067 kb on - strand, within ABZR87_RS01070 at 215.067 kb on - strand, within ABZR87_RS01070 at 215.295 kb on + strand at 215.295 kb on + strand at 215.295 kb on + strand at 215.296 kb on - strand at 215.296 kb on - strand at 215.296 kb on - strand at 215.387 kb on + strand at 215.387 kb on + strand at 215.388 kb on - strand at 215.403 kb on + strand at 215.403 kb on + strand at 215.596 kb on + strand at 215.596 kb on + strand at 215.596 kb on + strand at 215.596 kb on + strand at 215.596 kb on + strand at 215.596 kb on + strand at 215.597 kb on - strand at 215.597 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 3; outgrowth in LB remove 211,984 + +0.0 211,985 - +0.4 211,985 - -0.3 211,987 - +0.5 211,988 + -2.3 211,991 - +2.6 211,997 + -0.4 211,997 + +0.9 211,997 + -0.1 211,997 + -1.2 212,943 + +0.5 212,944 - -1.9 212,944 - +0.8 213,027 + +1.4 213,028 - -1.4 213,028 - -0.8 213,032 + +1.5 213,188 + ABZR87_RS01065 0.14 -0.6 213,581 + ABZR87_RS01065 0.37 +0.8 213,582 - ABZR87_RS01065 0.37 +0.1 213,582 - ABZR87_RS01065 0.37 +0.3 213,582 - ABZR87_RS01065 0.37 +0.6 213,702 + ABZR87_RS01065 0.44 +1.0 213,702 + ABZR87_RS01065 0.44 +1.2 213,703 - ABZR87_RS01065 0.44 +0.6 213,703 - ABZR87_RS01065 0.44 -2.1 213,703 - ABZR87_RS01065 0.44 -0.6 213,808 + ABZR87_RS01065 0.50 -0.1 213,809 - ABZR87_RS01065 0.50 +0.1 214,015 + ABZR87_RS01065 0.62 -1.1 214,015 + ABZR87_RS01065 0.62 +1.2 214,015 + ABZR87_RS01065 0.62 +0.3 214,015 + ABZR87_RS01065 0.62 +0.2 214,015 + ABZR87_RS01065 0.62 +0.7 214,015 + ABZR87_RS01065 0.62 -0.7 214,016 - ABZR87_RS01065 0.62 -0.8 214,016 - ABZR87_RS01065 0.62 -0.6 214,016 - ABZR87_RS01065 0.62 -1.7 214,016 - ABZR87_RS01065 0.62 -0.5 214,016 - ABZR87_RS01065 0.62 +0.4 214,016 - ABZR87_RS01065 0.62 -0.0 214,016 - ABZR87_RS01065 0.62 +0.9 214,016 - ABZR87_RS01065 0.62 +0.3 214,017 + ABZR87_RS01065 0.62 -0.0 214,018 - ABZR87_RS01065 0.62 -0.0 214,018 - ABZR87_RS01065 0.62 +0.0 214,018 - ABZR87_RS01065 0.62 +1.5 214,018 - ABZR87_RS01065 0.62 +0.9 214,018 - ABZR87_RS01065 0.62 +1.0 214,669 - -0.3 214,669 - -0.2 214,669 - +0.6 214,734 + +1.3 214,734 + -0.1 214,915 - ABZR87_RS01070 0.34 -0.5 215,066 + ABZR87_RS01070 0.67 -2.0 215,066 + ABZR87_RS01070 0.67 +0.1 215,067 - ABZR87_RS01070 0.68 +1.2 215,067 - ABZR87_RS01070 0.68 +0.9 215,295 + -1.0 215,295 + -3.0 215,295 + -0.7 215,296 - -2.4 215,296 - +2.0 215,296 - -1.3 215,387 + +0.2 215,387 + +0.9 215,388 - -0.1 215,403 + +0.8 215,403 + +1.8 215,596 + -1.3 215,596 + -0.5 215,596 + +0.2 215,596 + -2.6 215,596 + -0.4 215,596 + -0.2 215,597 - +1.5 215,597 - -0.9
Or see this region's nucleotide sequence