Experiment: rhizosphere sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00815 and ABZR87_RS00820 are separated by 67 nucleotides ABZR87_RS00820 and ABZR87_RS00825 are separated by 105 nucleotides ABZR87_RS00825 and ABZR87_RS00830 are separated by 148 nucleotides ABZR87_RS00830 and ABZR87_RS00835 are separated by 148 nucleotides
ABZR87_RS00815: ABZR87_RS00815 - acylase, at 162,874 to 165,258
_RS00815
ABZR87_RS00820: ABZR87_RS00820 - YajQ family cyclic di-GMP-binding protein, at 165,326 to 165,811
_RS00820
ABZR87_RS00825: ABZR87_RS00825 - UDP-N-acetylmuramate dehydrogenase, at 165,917 to 166,945
_RS00825
ABZR87_RS00830: ABZR87_RS00830 - pyrimidine/purine nucleoside phosphorylase, at 167,094 to 167,411
_RS00830
ABZR87_RS00835: ABZR87_RS00835 - argininosuccinate synthase, at 167,560 to 168,897
_RS00835
Position (kb) 165
166
167 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 164.983 kb on + strand, within ABZR87_RS00815 at 164.983 kb on + strand, within ABZR87_RS00815 at 164.984 kb on - strand, within ABZR87_RS00815 at 164.984 kb on - strand, within ABZR87_RS00815 at 165.043 kb on + strand at 165.043 kb on + strand at 165.044 kb on - strand at 165.044 kb on - strand at 165.058 kb on + strand at 165.058 kb on + strand at 165.058 kb on + strand at 165.058 kb on + strand at 165.058 kb on + strand at 165.058 kb on + strand at 165.058 kb on + strand at 165.058 kb on + strand at 165.059 kb on - strand at 165.073 kb on - strand at 165.073 kb on - strand at 165.073 kb on - strand at 165.073 kb on - strand at 165.116 kb on - strand at 165.116 kb on - strand at 165.116 kb on - strand at 165.116 kb on - strand at 165.256 kb on + strand at 165.256 kb on + strand at 165.576 kb on + strand, within ABZR87_RS00820 at 165.576 kb on + strand, within ABZR87_RS00820 at 165.577 kb on - strand, within ABZR87_RS00820 at 165.791 kb on + strand at 165.791 kb on + strand at 165.792 kb on - strand at 165.792 kb on - strand at 165.792 kb on - strand at 165.884 kb on + strand at 165.884 kb on + strand at 165.884 kb on + strand at 165.884 kb on + strand at 165.884 kb on + strand at 165.884 kb on + strand at 165.885 kb on - strand at 165.885 kb on - strand at 165.885 kb on - strand at 165.885 kb on - strand at 165.886 kb on + strand at 165.886 kb on + strand at 165.886 kb on + strand at 166.943 kb on + strand at 166.944 kb on - strand at 166.944 kb on - strand at 166.944 kb on - strand at 166.944 kb on - strand at 166.944 kb on - strand at 167.023 kb on + strand at 167.024 kb on - strand at 167.046 kb on + strand at 167.145 kb on + strand, within ABZR87_RS00830 at 167.145 kb on + strand, within ABZR87_RS00830 at 167.145 kb on + strand, within ABZR87_RS00830 at 167.145 kb on + strand, within ABZR87_RS00830 at 167.145 kb on + strand, within ABZR87_RS00830 at 167.146 kb on - strand, within ABZR87_RS00830 at 167.146 kb on - strand, within ABZR87_RS00830 at 167.177 kb on + strand, within ABZR87_RS00830 at 167.178 kb on - strand, within ABZR87_RS00830 at 167.286 kb on + strand, within ABZR87_RS00830 at 167.287 kb on - strand, within ABZR87_RS00830 at 167.287 kb on - strand, within ABZR87_RS00830 at 167.287 kb on - strand, within ABZR87_RS00830 at 167.386 kb on - strand at 167.386 kb on - strand at 167.391 kb on + strand at 167.391 kb on + strand at 167.391 kb on + strand at 167.391 kb on + strand at 167.391 kb on + strand at 167.391 kb on + strand at 167.391 kb on + strand at 167.391 kb on + strand at 167.391 kb on + strand at 167.391 kb on + strand at 167.392 kb on - strand at 167.392 kb on - strand at 167.392 kb on - strand at 167.392 kb on - strand at 167.392 kb on - strand at 167.404 kb on - strand at 167.427 kb on + strand at 167.473 kb on + strand at 167.473 kb on + strand at 167.473 kb on + strand at 167.473 kb on + strand at 167.473 kb on + strand at 167.474 kb on - strand at 167.474 kb on - strand at 167.474 kb on - strand at 167.674 kb on + strand at 167.680 kb on + strand at 167.680 kb on + strand at 167.680 kb on + strand at 167.681 kb on - strand at 167.681 kb on - strand at 167.716 kb on + strand, within ABZR87_RS00835 at 167.716 kb on + strand, within ABZR87_RS00835 at 167.716 kb on + strand, within ABZR87_RS00835 at 167.716 kb on + strand, within ABZR87_RS00835 at 167.716 kb on + strand, within ABZR87_RS00835 at 167.717 kb on - strand, within ABZR87_RS00835 at 167.717 kb on - strand, within ABZR87_RS00835 at 167.747 kb on - strand, within ABZR87_RS00835 at 167.850 kb on + strand, within ABZR87_RS00835 at 167.850 kb on + strand, within ABZR87_RS00835 at 167.850 kb on + strand, within ABZR87_RS00835 at 167.850 kb on + strand, within ABZR87_RS00835 at 167.850 kb on + strand, within ABZR87_RS00835 at 167.851 kb on - strand, within ABZR87_RS00835 at 167.851 kb on - strand, within ABZR87_RS00835 at 167.851 kb on - strand, within ABZR87_RS00835 at 167.851 kb on - strand, within ABZR87_RS00835 at 167.851 kb on - strand, within ABZR87_RS00835 at 167.855 kb on - strand, within ABZR87_RS00835 at 167.855 kb on - strand, within ABZR87_RS00835
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 3; outgrowth in LB remove 164,983 + ABZR87_RS00815 0.88 -0.2 164,983 + ABZR87_RS00815 0.88 -0.7 164,984 - ABZR87_RS00815 0.88 -0.0 164,984 - ABZR87_RS00815 0.88 -1.9 165,043 + +0.3 165,043 + -2.6 165,044 - +0.5 165,044 - -2.4 165,058 + +1.2 165,058 + -0.9 165,058 + -1.6 165,058 + -0.0 165,058 + -0.3 165,058 + +1.3 165,058 + +0.5 165,058 + -1.3 165,059 - -0.7 165,073 - +0.7 165,073 - -1.2 165,073 - -1.8 165,073 - -0.6 165,116 - +0.0 165,116 - +1.2 165,116 - -0.7 165,116 - +0.2 165,256 + -0.4 165,256 + -2.0 165,576 + ABZR87_RS00820 0.51 +0.7 165,576 + ABZR87_RS00820 0.51 -2.2 165,577 - ABZR87_RS00820 0.52 -0.2 165,791 + +2.6 165,791 + -2.0 165,792 - +0.3 165,792 - -0.5 165,792 - -0.9 165,884 + +0.4 165,884 + -0.9 165,884 + -0.1 165,884 + +2.9 165,884 + +0.1 165,884 + +0.0 165,885 - -0.9 165,885 - +1.4 165,885 - -0.3 165,885 - +1.8 165,886 + +1.5 165,886 + -1.1 165,886 + -3.2 166,943 + -0.6 166,944 - -1.3 166,944 - -0.5 166,944 - -0.3 166,944 - +0.9 166,944 - +0.2 167,023 + +0.6 167,024 - -0.3 167,046 + +0.2 167,145 + ABZR87_RS00830 0.16 +0.4 167,145 + ABZR87_RS00830 0.16 -0.8 167,145 + ABZR87_RS00830 0.16 -2.8 167,145 + ABZR87_RS00830 0.16 -1.3 167,145 + ABZR87_RS00830 0.16 +0.9 167,146 - ABZR87_RS00830 0.16 +0.3 167,146 - ABZR87_RS00830 0.16 +1.3 167,177 + ABZR87_RS00830 0.26 -0.2 167,178 - ABZR87_RS00830 0.26 -0.5 167,286 + ABZR87_RS00830 0.60 -1.0 167,287 - ABZR87_RS00830 0.61 -0.1 167,287 - ABZR87_RS00830 0.61 -0.2 167,287 - ABZR87_RS00830 0.61 +3.6 167,386 - -0.0 167,386 - -0.0 167,391 + +0.3 167,391 + -1.2 167,391 + -0.6 167,391 + -0.6 167,391 + -0.5 167,391 + -0.3 167,391 + +1.1 167,391 + +0.2 167,391 + -0.5 167,391 + -0.5 167,392 - +1.0 167,392 - +0.7 167,392 - +0.1 167,392 - -1.3 167,392 - +1.0 167,404 - -0.1 167,427 + -0.1 167,473 + -1.5 167,473 + -0.3 167,473 + -1.4 167,473 + -1.8 167,473 + -1.2 167,474 - +3.6 167,474 - +1.8 167,474 - +0.4 167,674 + +4.6 167,680 + +1.8 167,680 + +0.7 167,680 + +1.9 167,681 - +2.3 167,681 - +2.3 167,716 + ABZR87_RS00835 0.12 +4.6 167,716 + ABZR87_RS00835 0.12 +4.6 167,716 + ABZR87_RS00835 0.12 +2.0 167,716 + ABZR87_RS00835 0.12 +3.6 167,716 + ABZR87_RS00835 0.12 +2.3 167,717 - ABZR87_RS00835 0.12 +1.6 167,717 - ABZR87_RS00835 0.12 +3.0 167,747 - ABZR87_RS00835 0.14 +2.3 167,850 + ABZR87_RS00835 0.22 +2.8 167,850 + ABZR87_RS00835 0.22 +0.2 167,850 + ABZR87_RS00835 0.22 +0.6 167,850 + ABZR87_RS00835 0.22 +3.0 167,850 + ABZR87_RS00835 0.22 +2.0 167,851 - ABZR87_RS00835 0.22 +3.0 167,851 - ABZR87_RS00835 0.22 +3.0 167,851 - ABZR87_RS00835 0.22 +1.6 167,851 - ABZR87_RS00835 0.22 +2.6 167,851 - ABZR87_RS00835 0.22 +1.8 167,855 - ABZR87_RS00835 0.22 +1.2 167,855 - ABZR87_RS00835 0.22 +2.6
Or see this region's nucleotide sequence