Experiment: rhizosphere sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00800 and ABZR87_RS00805 are separated by 70 nucleotides ABZR87_RS00805 and ABZR87_RS00810 overlap by 4 nucleotides ABZR87_RS00810 and ABZR87_RS00815 are separated by 160 nucleotides
ABZR87_RS00800: ABZR87_RS00800 - Cys-tRNA(Pro) deacylase, at 160,515 to 161,006
_RS00800
ABZR87_RS00805: ABZR87_RS00805 - glycerol-3-phosphate 1-O-acyltransferase PlsY, at 161,077 to 161,700
_RS00805
ABZR87_RS00810: ABZR87_RS00810 - helix-turn-helix domain-containing protein, at 161,697 to 162,713
_RS00810
ABZR87_RS00815: ABZR87_RS00815 - acylase, at 162,874 to 165,258
_RS00815
Position (kb) 161
162
163 Strain fitness (log2 ratio) -2
-1
0
1
2 at 160.818 kb on + strand, within ABZR87_RS00800 at 160.819 kb on - strand, within ABZR87_RS00800 at 160.870 kb on - strand, within ABZR87_RS00800 at 160.870 kb on - strand, within ABZR87_RS00800 at 160.870 kb on - strand, within ABZR87_RS00800 at 160.905 kb on + strand, within ABZR87_RS00800 at 160.905 kb on + strand, within ABZR87_RS00800 at 160.905 kb on + strand, within ABZR87_RS00800 at 160.906 kb on - strand, within ABZR87_RS00800 at 161.045 kb on - strand at 161.045 kb on - strand at 161.698 kb on + strand at 161.698 kb on + strand at 161.699 kb on - strand at 162.104 kb on + strand, within ABZR87_RS00810 at 162.104 kb on + strand, within ABZR87_RS00810 at 162.105 kb on - strand, within ABZR87_RS00810 at 162.105 kb on - strand, within ABZR87_RS00810 at 162.373 kb on + strand, within ABZR87_RS00810 at 162.373 kb on + strand, within ABZR87_RS00810 at 162.668 kb on + strand at 162.668 kb on + strand at 162.669 kb on - strand at 162.669 kb on - strand at 162.721 kb on + strand at 162.722 kb on - strand at 162.722 kb on - strand at 162.722 kb on - strand at 162.722 kb on - strand at 162.722 kb on - strand at 162.722 kb on - strand at 162.722 kb on - strand at 162.723 kb on + strand at 162.723 kb on + strand at 162.723 kb on + strand at 162.723 kb on + strand at 162.724 kb on - strand at 162.739 kb on + strand at 162.740 kb on - strand at 162.740 kb on - strand at 162.775 kb on + strand at 162.776 kb on - strand at 162.844 kb on - strand at 162.844 kb on - strand at 163.045 kb on + strand at 163.046 kb on - strand at 163.046 kb on - strand at 163.046 kb on - strand at 163.072 kb on + strand at 163.072 kb on + strand at 163.072 kb on + strand at 163.073 kb on - strand at 163.073 kb on - strand at 163.073 kb on - strand at 163.079 kb on - strand at 163.294 kb on + strand, within ABZR87_RS00815 at 163.294 kb on + strand, within ABZR87_RS00815 at 163.294 kb on + strand, within ABZR87_RS00815 at 163.295 kb on - strand, within ABZR87_RS00815 at 163.295 kb on - strand, within ABZR87_RS00815 at 163.306 kb on + strand, within ABZR87_RS00815 at 163.306 kb on + strand, within ABZR87_RS00815 at 163.307 kb on - strand, within ABZR87_RS00815 at 163.315 kb on + strand, within ABZR87_RS00815 at 163.605 kb on + strand, within ABZR87_RS00815 at 163.606 kb on - strand, within ABZR87_RS00815 at 163.666 kb on + strand, within ABZR87_RS00815 at 163.666 kb on + strand, within ABZR87_RS00815
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 3; outgrowth in LB remove 160,818 + ABZR87_RS00800 0.62 +2.6 160,819 - ABZR87_RS00800 0.62 +0.1 160,870 - ABZR87_RS00800 0.72 +1.0 160,870 - ABZR87_RS00800 0.72 +1.8 160,870 - ABZR87_RS00800 0.72 +0.6 160,905 + ABZR87_RS00800 0.79 -0.2 160,905 + ABZR87_RS00800 0.79 +0.0 160,905 + ABZR87_RS00800 0.79 +0.8 160,906 - ABZR87_RS00800 0.79 +0.8 161,045 - -1.7 161,045 - +0.8 161,698 + -0.3 161,698 + -1.3 161,699 - -0.7 162,104 + ABZR87_RS00810 0.40 -1.0 162,104 + ABZR87_RS00810 0.40 -0.8 162,105 - ABZR87_RS00810 0.40 +0.1 162,105 - ABZR87_RS00810 0.40 -0.0 162,373 + ABZR87_RS00810 0.66 -0.2 162,373 + ABZR87_RS00810 0.66 -1.0 162,668 + +1.6 162,668 + +0.2 162,669 - -0.5 162,669 - -1.3 162,721 + +1.2 162,722 - +0.5 162,722 - +0.4 162,722 - -1.9 162,722 - +0.7 162,722 - -1.6 162,722 - +0.8 162,722 - -0.9 162,723 + +0.2 162,723 + -0.7 162,723 + -0.1 162,723 + -1.0 162,724 - -0.6 162,739 + -1.8 162,740 - +1.2 162,740 - +0.1 162,775 + +1.5 162,776 - +1.0 162,844 - +0.0 162,844 - +0.2 163,045 + +1.0 163,046 - +0.3 163,046 - -0.4 163,046 - -0.5 163,072 + +2.1 163,072 + +0.9 163,072 + -0.8 163,073 - -0.0 163,073 - +1.0 163,073 - +0.3 163,079 - -0.6 163,294 + ABZR87_RS00815 0.18 -0.3 163,294 + ABZR87_RS00815 0.18 +0.4 163,294 + ABZR87_RS00815 0.18 -0.3 163,295 - ABZR87_RS00815 0.18 +0.3 163,295 - ABZR87_RS00815 0.18 -2.4 163,306 + ABZR87_RS00815 0.18 -0.7 163,306 + ABZR87_RS00815 0.18 -1.1 163,307 - ABZR87_RS00815 0.18 -2.0 163,315 + ABZR87_RS00815 0.18 +1.0 163,605 + ABZR87_RS00815 0.31 -0.6 163,606 - ABZR87_RS00815 0.31 +1.8 163,666 + ABZR87_RS00815 0.33 -0.2 163,666 + ABZR87_RS00815 0.33 -0.1
Or see this region's nucleotide sequence