Experiment: rhizosphere sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00765 and ABZR87_RS00770 overlap by 7 nucleotides ABZR87_RS00770 and ABZR87_RS00775 are separated by 16 nucleotides ABZR87_RS00775 and ABZR87_RS00780 are separated by 261 nucleotides
ABZR87_RS00765: ABZR87_RS00765 - N-acetylmuramoyl-L-alanine amidase, at 153,748 to 155,271
_RS00765
ABZR87_RS00770: ABZR87_RS00770 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE, at 155,265 to 155,843
_RS00770
ABZR87_RS00775: ABZR87_RS00775 - tRNA epoxyqueuosine(34) reductase QueG, at 155,860 to 157,011
_RS00775
ABZR87_RS00780: ABZR87_RS00780 - chalcone isomerase family protein, at 157,273 to 157,923
_RS00780
Position (kb) 155
156
157
158 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 154.937 kb on + strand, within ABZR87_RS00765 at 154.937 kb on + strand, within ABZR87_RS00765 at 154.937 kb on + strand, within ABZR87_RS00765 at 154.937 kb on + strand, within ABZR87_RS00765 at 154.937 kb on + strand, within ABZR87_RS00765 at 154.937 kb on + strand, within ABZR87_RS00765 at 154.937 kb on + strand, within ABZR87_RS00765 at 154.937 kb on + strand, within ABZR87_RS00765 at 154.938 kb on - strand, within ABZR87_RS00765 at 154.938 kb on - strand, within ABZR87_RS00765 at 155.087 kb on + strand, within ABZR87_RS00765 at 155.088 kb on - strand, within ABZR87_RS00765 at 155.088 kb on - strand, within ABZR87_RS00765 at 155.088 kb on - strand, within ABZR87_RS00765 at 155.088 kb on - strand, within ABZR87_RS00765 at 155.088 kb on - strand, within ABZR87_RS00765 at 155.088 kb on - strand, within ABZR87_RS00765 at 155.295 kb on + strand at 155.295 kb on + strand at 155.296 kb on - strand at 155.296 kb on - strand at 155.296 kb on - strand at 155.296 kb on - strand at 155.848 kb on + strand at 155.848 kb on + strand at 155.849 kb on - strand at 155.849 kb on - strand at 155.849 kb on - strand at 155.849 kb on - strand at 156.071 kb on - strand, within ABZR87_RS00775 at 156.071 kb on - strand, within ABZR87_RS00775 at 156.071 kb on - strand, within ABZR87_RS00775 at 156.071 kb on - strand, within ABZR87_RS00775 at 156.071 kb on - strand, within ABZR87_RS00775 at 156.071 kb on - strand, within ABZR87_RS00775 at 156.072 kb on + strand, within ABZR87_RS00775 at 156.072 kb on + strand, within ABZR87_RS00775 at 156.072 kb on + strand, within ABZR87_RS00775 at 156.072 kb on + strand, within ABZR87_RS00775 at 156.073 kb on - strand, within ABZR87_RS00775 at 156.073 kb on - strand, within ABZR87_RS00775 at 156.155 kb on - strand, within ABZR87_RS00775 at 156.254 kb on - strand, within ABZR87_RS00775 at 156.254 kb on - strand, within ABZR87_RS00775 at 156.271 kb on + strand, within ABZR87_RS00775 at 156.272 kb on - strand, within ABZR87_RS00775 at 156.281 kb on + strand, within ABZR87_RS00775 at 156.282 kb on - strand, within ABZR87_RS00775 at 156.282 kb on - strand, within ABZR87_RS00775 at 156.337 kb on + strand, within ABZR87_RS00775 at 156.350 kb on + strand, within ABZR87_RS00775 at 156.351 kb on - strand, within ABZR87_RS00775 at 156.390 kb on + strand, within ABZR87_RS00775 at 156.577 kb on + strand, within ABZR87_RS00775 at 156.578 kb on - strand, within ABZR87_RS00775 at 156.578 kb on - strand, within ABZR87_RS00775 at 156.607 kb on + strand, within ABZR87_RS00775 at 156.607 kb on + strand, within ABZR87_RS00775 at 156.608 kb on - strand, within ABZR87_RS00775 at 156.608 kb on - strand, within ABZR87_RS00775 at 156.608 kb on - strand, within ABZR87_RS00775 at 156.608 kb on - strand, within ABZR87_RS00775 at 156.673 kb on + strand, within ABZR87_RS00775 at 156.674 kb on - strand, within ABZR87_RS00775 at 156.674 kb on - strand, within ABZR87_RS00775 at 157.067 kb on + strand at 157.067 kb on + strand at 157.068 kb on - strand at 157.068 kb on - strand at 157.068 kb on - strand at 157.101 kb on + strand at 157.123 kb on + strand at 157.147 kb on + strand at 157.147 kb on + strand at 157.148 kb on - strand at 157.170 kb on + strand at 157.171 kb on - strand at 157.171 kb on - strand at 157.172 kb on + strand at 157.172 kb on + strand at 157.173 kb on - strand at 157.180 kb on - strand at 157.182 kb on + strand at 157.214 kb on - strand at 157.214 kb on - strand at 157.214 kb on - strand at 157.214 kb on - strand at 157.214 kb on - strand at 157.251 kb on + strand at 157.251 kb on + strand at 157.257 kb on + strand at 157.516 kb on + strand, within ABZR87_RS00780 at 157.516 kb on + strand, within ABZR87_RS00780 at 157.516 kb on + strand, within ABZR87_RS00780 at 157.516 kb on + strand, within ABZR87_RS00780 at 157.516 kb on + strand, within ABZR87_RS00780 at 157.517 kb on - strand, within ABZR87_RS00780 at 157.517 kb on - strand, within ABZR87_RS00780 at 157.517 kb on - strand, within ABZR87_RS00780 at 157.517 kb on - strand, within ABZR87_RS00780 at 157.517 kb on - strand, within ABZR87_RS00780 at 157.532 kb on - strand, within ABZR87_RS00780 at 157.532 kb on - strand, within ABZR87_RS00780 at 157.532 kb on - strand, within ABZR87_RS00780 at 157.771 kb on + strand, within ABZR87_RS00780 at 157.847 kb on - strand, within ABZR87_RS00780 at 157.847 kb on - strand, within ABZR87_RS00780 at 157.988 kb on + strand at 157.988 kb on + strand at 157.988 kb on + strand at 157.989 kb on - strand at 157.989 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 3; outgrowth in LB remove 154,937 + ABZR87_RS00765 0.78 -2.1 154,937 + ABZR87_RS00765 0.78 -0.8 154,937 + ABZR87_RS00765 0.78 -0.8 154,937 + ABZR87_RS00765 0.78 +0.5 154,937 + ABZR87_RS00765 0.78 +0.2 154,937 + ABZR87_RS00765 0.78 +1.2 154,937 + ABZR87_RS00765 0.78 -1.9 154,937 + ABZR87_RS00765 0.78 +0.2 154,938 - ABZR87_RS00765 0.78 +3.4 154,938 - ABZR87_RS00765 0.78 -0.8 155,087 + ABZR87_RS00765 0.88 +0.6 155,088 - ABZR87_RS00765 0.88 +0.5 155,088 - ABZR87_RS00765 0.88 -1.4 155,088 - ABZR87_RS00765 0.88 +2.2 155,088 - ABZR87_RS00765 0.88 +0.2 155,088 - ABZR87_RS00765 0.88 -1.8 155,088 - ABZR87_RS00765 0.88 -1.6 155,295 + +0.7 155,295 + +3.0 155,296 - -0.2 155,296 - -0.1 155,296 - +0.5 155,296 - -0.3 155,848 + +1.8 155,848 + +1.2 155,849 - -0.8 155,849 - +1.9 155,849 - +1.4 155,849 - +0.4 156,071 - ABZR87_RS00775 0.18 -1.6 156,071 - ABZR87_RS00775 0.18 +0.1 156,071 - ABZR87_RS00775 0.18 -0.1 156,071 - ABZR87_RS00775 0.18 -1.4 156,071 - ABZR87_RS00775 0.18 -1.4 156,071 - ABZR87_RS00775 0.18 +0.7 156,072 + ABZR87_RS00775 0.18 +0.3 156,072 + ABZR87_RS00775 0.18 +0.5 156,072 + ABZR87_RS00775 0.18 -1.3 156,072 + ABZR87_RS00775 0.18 -0.4 156,073 - ABZR87_RS00775 0.18 -0.5 156,073 - ABZR87_RS00775 0.18 +1.0 156,155 - ABZR87_RS00775 0.26 -1.3 156,254 - ABZR87_RS00775 0.34 -1.3 156,254 - ABZR87_RS00775 0.34 +0.3 156,271 + ABZR87_RS00775 0.36 +0.6 156,272 - ABZR87_RS00775 0.36 -0.5 156,281 + ABZR87_RS00775 0.37 +1.7 156,282 - ABZR87_RS00775 0.37 +0.2 156,282 - ABZR87_RS00775 0.37 -0.0 156,337 + ABZR87_RS00775 0.41 +0.2 156,350 + ABZR87_RS00775 0.43 +0.5 156,351 - ABZR87_RS00775 0.43 +0.5 156,390 + ABZR87_RS00775 0.46 +0.8 156,577 + ABZR87_RS00775 0.62 -1.4 156,578 - ABZR87_RS00775 0.62 -0.2 156,578 - ABZR87_RS00775 0.62 -0.3 156,607 + ABZR87_RS00775 0.65 +0.4 156,607 + ABZR87_RS00775 0.65 +0.6 156,608 - ABZR87_RS00775 0.65 -1.8 156,608 - ABZR87_RS00775 0.65 -0.1 156,608 - ABZR87_RS00775 0.65 -0.4 156,608 - ABZR87_RS00775 0.65 -0.1 156,673 + ABZR87_RS00775 0.71 +0.2 156,674 - ABZR87_RS00775 0.71 -0.3 156,674 - ABZR87_RS00775 0.71 -0.4 157,067 + -0.4 157,067 + -0.6 157,068 - +2.0 157,068 - +0.8 157,068 - +1.3 157,101 + -0.3 157,123 + +0.7 157,147 + -3.0 157,147 + +1.3 157,148 - -0.4 157,170 + +0.2 157,171 - +0.3 157,171 - -0.4 157,172 + -0.6 157,172 + -1.6 157,173 - +0.6 157,180 - +1.7 157,182 + +0.3 157,214 - -1.0 157,214 - +1.0 157,214 - -0.8 157,214 - -0.2 157,214 - +0.6 157,251 + +1.0 157,251 + +1.3 157,257 + -1.0 157,516 + ABZR87_RS00780 0.37 +0.1 157,516 + ABZR87_RS00780 0.37 -1.0 157,516 + ABZR87_RS00780 0.37 -0.2 157,516 + ABZR87_RS00780 0.37 +0.6 157,516 + ABZR87_RS00780 0.37 +0.9 157,517 - ABZR87_RS00780 0.37 -2.1 157,517 - ABZR87_RS00780 0.37 -0.5 157,517 - ABZR87_RS00780 0.37 +1.8 157,517 - ABZR87_RS00780 0.37 -1.6 157,517 - ABZR87_RS00780 0.37 +0.3 157,532 - ABZR87_RS00780 0.40 +0.4 157,532 - ABZR87_RS00780 0.40 -0.3 157,532 - ABZR87_RS00780 0.40 -0.5 157,771 + ABZR87_RS00780 0.76 -0.7 157,847 - ABZR87_RS00780 0.88 -0.1 157,847 - ABZR87_RS00780 0.88 +0.7 157,988 + -0.4 157,988 + +1.6 157,988 + -2.3 157,989 - -1.5 157,989 - -0.7
Or see this region's nucleotide sequence