Experiment: rhizosphere sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00645 and ABZR87_RS00650 are separated by 311 nucleotides ABZR87_RS00650 and ABZR87_RS00655 are separated by 98 nucleotides ABZR87_RS00655 and ABZR87_RS00660 overlap by 4 nucleotides
ABZR87_RS00645: ABZR87_RS00645 - oxidoreductase, at 133,436 to 134,188
_RS00645
ABZR87_RS00650: ABZR87_RS00650 - HU family DNA-binding protein, at 134,500 to 134,784
_RS00650
ABZR87_RS00655: ABZR87_RS00655 - HutD family protein, at 134,883 to 135,461
_RS00655
ABZR87_RS00660: ABZR87_RS00660 - formimidoylglutamase, at 135,458 to 136,417
_RS00660
Position (kb) 134
135 Strain fitness (log2 ratio) -2
-1
0
1
2 at 133.731 kb on + strand, within ABZR87_RS00645 at 133.731 kb on + strand, within ABZR87_RS00645 at 133.731 kb on + strand, within ABZR87_RS00645 at 133.828 kb on - strand, within ABZR87_RS00645 at 134.230 kb on + strand at 134.230 kb on + strand at 134.230 kb on + strand at 134.230 kb on + strand at 134.231 kb on - strand at 134.231 kb on - strand at 134.231 kb on - strand at 134.332 kb on - strand at 134.415 kb on + strand at 134.415 kb on + strand at 134.445 kb on + strand at 134.446 kb on - strand at 134.447 kb on + strand at 134.447 kb on + strand at 134.447 kb on + strand at 134.447 kb on + strand at 134.448 kb on - strand at 134.448 kb on - strand at 134.462 kb on + strand at 134.462 kb on + strand at 134.782 kb on + strand at 134.783 kb on - strand at 134.783 kb on - strand at 134.783 kb on - strand at 134.991 kb on - strand, within ABZR87_RS00655 at 135.028 kb on + strand, within ABZR87_RS00655 at 135.028 kb on + strand, within ABZR87_RS00655 at 135.028 kb on + strand, within ABZR87_RS00655 at 135.028 kb on + strand, within ABZR87_RS00655 at 135.029 kb on - strand, within ABZR87_RS00655 at 135.029 kb on - strand, within ABZR87_RS00655 at 135.526 kb on - strand at 135.526 kb on - strand at 135.622 kb on - strand, within ABZR87_RS00660 at 135.622 kb on - strand, within ABZR87_RS00660 at 135.622 kb on - strand, within ABZR87_RS00660 at 135.687 kb on + strand, within ABZR87_RS00660 at 135.688 kb on - strand, within ABZR87_RS00660 at 135.688 kb on - strand, within ABZR87_RS00660 at 135.774 kb on + strand, within ABZR87_RS00660 at 135.775 kb on - strand, within ABZR87_RS00660
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 3; outgrowth in LB remove 133,731 + ABZR87_RS00645 0.39 -0.1 133,731 + ABZR87_RS00645 0.39 -0.8 133,731 + ABZR87_RS00645 0.39 +0.6 133,828 - ABZR87_RS00645 0.52 -0.7 134,230 + +2.1 134,230 + +2.2 134,230 + +0.9 134,230 + +2.0 134,231 - -1.5 134,231 - +0.7 134,231 - -1.1 134,332 - +0.2 134,415 + +0.2 134,415 + -1.2 134,445 + +0.9 134,446 - -0.5 134,447 + +1.7 134,447 + +0.7 134,447 + -2.1 134,447 + +2.0 134,448 - -0.1 134,448 - -1.5 134,462 + -1.1 134,462 + +0.3 134,782 + +0.0 134,783 - -0.9 134,783 - +0.9 134,783 - -1.3 134,991 - ABZR87_RS00655 0.19 -0.8 135,028 + ABZR87_RS00655 0.25 +0.7 135,028 + ABZR87_RS00655 0.25 -1.6 135,028 + ABZR87_RS00655 0.25 -1.0 135,028 + ABZR87_RS00655 0.25 -0.6 135,029 - ABZR87_RS00655 0.25 +1.5 135,029 - ABZR87_RS00655 0.25 +1.2 135,526 - -0.0 135,526 - +0.3 135,622 - ABZR87_RS00660 0.17 -1.6 135,622 - ABZR87_RS00660 0.17 +0.2 135,622 - ABZR87_RS00660 0.17 +0.3 135,687 + ABZR87_RS00660 0.24 +0.1 135,688 - ABZR87_RS00660 0.24 -0.4 135,688 - ABZR87_RS00660 0.24 +1.3 135,774 + ABZR87_RS00660 0.33 -0.8 135,775 - ABZR87_RS00660 0.33 -1.0
Or see this region's nucleotide sequence