Experiment: rhizosphere sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00600 and ABZR87_RS00605 are separated by 408 nucleotides ABZR87_RS00605 and ABZR87_RS00610 are separated by 272 nucleotides
ABZR87_RS00600: ABZR87_RS00600 - hypothetical protein, at 123,936 to 124,742
_RS00600
ABZR87_RS00605: ABZR87_RS00605 - hypothetical protein, at 125,151 to 125,423
_RS00605
ABZR87_RS00610: ABZR87_RS00610 - HD-GYP domain-containing protein, at 125,696 to 126,904
_RS00610
Position (kb) 125
126 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 124.243 kb on + strand, within ABZR87_RS00600 at 124.410 kb on - strand, within ABZR87_RS00600 at 124.690 kb on + strand at 124.691 kb on - strand at 124.691 kb on - strand at 124.691 kb on - strand at 124.816 kb on - strand at 124.816 kb on - strand at 124.861 kb on + strand at 124.861 kb on + strand at 124.892 kb on + strand at 124.933 kb on - strand at 124.977 kb on + strand at 124.977 kb on + strand at 124.977 kb on + strand at 124.977 kb on + strand at 124.977 kb on + strand at 124.978 kb on - strand at 124.978 kb on - strand at 124.978 kb on - strand at 124.978 kb on - strand at 124.978 kb on - strand at 124.978 kb on - strand at 124.978 kb on - strand at 124.978 kb on - strand at 125.040 kb on + strand at 125.041 kb on - strand at 125.041 kb on - strand at 125.041 kb on - strand at 125.054 kb on + strand at 125.072 kb on + strand at 125.072 kb on + strand at 125.072 kb on + strand at 125.072 kb on + strand at 125.072 kb on + strand at 125.073 kb on - strand at 125.073 kb on - strand at 125.078 kb on + strand at 125.078 kb on + strand at 125.078 kb on + strand at 125.078 kb on + strand at 125.078 kb on + strand at 125.078 kb on + strand at 125.079 kb on - strand at 125.079 kb on - strand at 125.079 kb on - strand at 125.079 kb on - strand at 125.238 kb on + strand, within ABZR87_RS00605 at 125.238 kb on + strand, within ABZR87_RS00605 at 125.238 kb on + strand, within ABZR87_RS00605 at 125.238 kb on + strand, within ABZR87_RS00605 at 125.238 kb on + strand, within ABZR87_RS00605 at 125.238 kb on + strand, within ABZR87_RS00605 at 125.238 kb on + strand, within ABZR87_RS00605 at 125.238 kb on + strand, within ABZR87_RS00605 at 125.239 kb on - strand, within ABZR87_RS00605 at 125.239 kb on - strand, within ABZR87_RS00605 at 125.274 kb on + strand, within ABZR87_RS00605 at 125.275 kb on - strand, within ABZR87_RS00605 at 125.275 kb on - strand, within ABZR87_RS00605 at 125.304 kb on + strand, within ABZR87_RS00605 at 125.304 kb on + strand, within ABZR87_RS00605 at 125.304 kb on + strand, within ABZR87_RS00605 at 125.305 kb on - strand, within ABZR87_RS00605 at 125.337 kb on + strand, within ABZR87_RS00605 at 125.337 kb on + strand, within ABZR87_RS00605 at 125.338 kb on - strand, within ABZR87_RS00605 at 125.357 kb on + strand, within ABZR87_RS00605 at 125.358 kb on - strand, within ABZR87_RS00605 at 125.370 kb on + strand, within ABZR87_RS00605 at 125.371 kb on - strand, within ABZR87_RS00605 at 125.371 kb on - strand, within ABZR87_RS00605 at 125.421 kb on + strand at 125.421 kb on + strand at 125.421 kb on + strand at 125.421 kb on + strand at 125.421 kb on + strand at 125.421 kb on + strand at 125.421 kb on + strand at 125.421 kb on + strand at 125.421 kb on + strand at 125.422 kb on - strand at 125.422 kb on - strand at 125.422 kb on - strand at 125.422 kb on - strand at 125.443 kb on + strand at 125.453 kb on + strand at 125.453 kb on + strand at 125.453 kb on + strand at 125.453 kb on + strand at 125.454 kb on - strand at 125.454 kb on - strand at 125.454 kb on - strand at 125.454 kb on - strand at 125.454 kb on - strand at 125.454 kb on - strand at 125.454 kb on - strand at 125.504 kb on + strand at 125.540 kb on + strand at 125.540 kb on + strand at 125.540 kb on + strand at 125.541 kb on - strand at 125.606 kb on + strand at 125.607 kb on - strand at 125.659 kb on + strand at 125.738 kb on + strand at 125.738 kb on + strand at 125.738 kb on + strand at 125.738 kb on + strand at 125.738 kb on + strand at 125.739 kb on - strand at 125.739 kb on - strand at 125.739 kb on - strand at 125.739 kb on - strand at 125.739 kb on - strand at 125.739 kb on - strand at 125.739 kb on - strand at 126.172 kb on + strand, within ABZR87_RS00610 at 126.172 kb on + strand, within ABZR87_RS00610 at 126.172 kb on + strand, within ABZR87_RS00610 at 126.172 kb on + strand, within ABZR87_RS00610 at 126.172 kb on + strand, within ABZR87_RS00610 at 126.172 kb on + strand, within ABZR87_RS00610 at 126.172 kb on + strand, within ABZR87_RS00610 at 126.172 kb on + strand, within ABZR87_RS00610 at 126.173 kb on - strand, within ABZR87_RS00610 at 126.173 kb on - strand, within ABZR87_RS00610 at 126.173 kb on - strand, within ABZR87_RS00610 at 126.173 kb on - strand, within ABZR87_RS00610 at 126.173 kb on - strand, within ABZR87_RS00610 at 126.173 kb on - strand, within ABZR87_RS00610 at 126.173 kb on - strand, within ABZR87_RS00610 at 126.173 kb on - strand, within ABZR87_RS00610 at 126.173 kb on - strand, within ABZR87_RS00610 at 126.173 kb on - strand, within ABZR87_RS00610 at 126.173 kb on - strand, within ABZR87_RS00610 at 126.173 kb on - strand, within ABZR87_RS00610
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 3; outgrowth in LB remove 124,243 + ABZR87_RS00600 0.38 -1.6 124,410 - ABZR87_RS00600 0.59 -0.4 124,690 + -0.6 124,691 - -0.0 124,691 - -2.5 124,691 - -1.6 124,816 - -0.3 124,816 - +0.6 124,861 + -1.7 124,861 + -2.6 124,892 + +0.6 124,933 - +0.6 124,977 + +0.4 124,977 + -0.8 124,977 + -2.8 124,977 + -0.1 124,977 + +1.1 124,978 - +0.0 124,978 - -0.0 124,978 - -1.0 124,978 - -0.2 124,978 - -0.3 124,978 - +2.0 124,978 - -0.1 124,978 - -1.5 125,040 + -1.9 125,041 - -0.6 125,041 - -0.8 125,041 - +0.1 125,054 + -0.1 125,072 + -1.8 125,072 + -0.1 125,072 + +0.2 125,072 + -0.2 125,072 + +3.7 125,073 - -1.6 125,073 - +0.5 125,078 + +3.0 125,078 + -0.9 125,078 + -0.1 125,078 + -1.3 125,078 + +1.6 125,078 + +1.3 125,079 - -1.8 125,079 - -0.4 125,079 - -0.2 125,079 - -1.7 125,238 + ABZR87_RS00605 0.32 -1.1 125,238 + ABZR87_RS00605 0.32 -1.7 125,238 + ABZR87_RS00605 0.32 -0.5 125,238 + ABZR87_RS00605 0.32 -1.3 125,238 + ABZR87_RS00605 0.32 -1.0 125,238 + ABZR87_RS00605 0.32 -2.7 125,238 + ABZR87_RS00605 0.32 +1.4 125,238 + ABZR87_RS00605 0.32 -0.4 125,239 - ABZR87_RS00605 0.32 -1.2 125,239 - ABZR87_RS00605 0.32 -0.8 125,274 + ABZR87_RS00605 0.45 -1.3 125,275 - ABZR87_RS00605 0.45 -0.1 125,275 - ABZR87_RS00605 0.45 -1.2 125,304 + ABZR87_RS00605 0.56 +1.3 125,304 + ABZR87_RS00605 0.56 -1.2 125,304 + ABZR87_RS00605 0.56 -1.2 125,305 - ABZR87_RS00605 0.56 +0.5 125,337 + ABZR87_RS00605 0.68 +0.5 125,337 + ABZR87_RS00605 0.68 -0.2 125,338 - ABZR87_RS00605 0.68 +0.5 125,357 + ABZR87_RS00605 0.75 -0.6 125,358 - ABZR87_RS00605 0.76 +1.9 125,370 + ABZR87_RS00605 0.80 +1.8 125,371 - ABZR87_RS00605 0.81 -1.7 125,371 - ABZR87_RS00605 0.81 +2.0 125,421 + +0.8 125,421 + +0.2 125,421 + -0.4 125,421 + +0.3 125,421 + +1.2 125,421 + -0.3 125,421 + -0.6 125,421 + -0.1 125,421 + +1.1 125,422 - -2.2 125,422 - +0.2 125,422 - +0.7 125,422 - -1.1 125,443 + +0.6 125,453 + -2.2 125,453 + -0.9 125,453 + +0.2 125,453 + -1.3 125,454 - -1.2 125,454 - +0.6 125,454 - +0.3 125,454 - +0.3 125,454 - -0.8 125,454 - +1.8 125,454 - +0.7 125,504 + -1.3 125,540 + +1.0 125,540 + -0.2 125,540 + +0.4 125,541 - +0.4 125,606 + +1.0 125,607 - +1.3 125,659 + +1.3 125,738 + +1.7 125,738 + -0.1 125,738 + +0.6 125,738 + -0.6 125,738 + -0.0 125,739 - -0.1 125,739 - -1.0 125,739 - +0.0 125,739 - -1.2 125,739 - +0.6 125,739 - +1.6 125,739 - +0.8 126,172 + ABZR87_RS00610 0.39 -0.3 126,172 + ABZR87_RS00610 0.39 -0.1 126,172 + ABZR87_RS00610 0.39 -1.0 126,172 + ABZR87_RS00610 0.39 +1.2 126,172 + ABZR87_RS00610 0.39 +0.3 126,172 + ABZR87_RS00610 0.39 +0.5 126,172 + ABZR87_RS00610 0.39 +1.3 126,172 + ABZR87_RS00610 0.39 -2.2 126,173 - ABZR87_RS00610 0.39 -1.8 126,173 - ABZR87_RS00610 0.39 +0.5 126,173 - ABZR87_RS00610 0.39 -0.3 126,173 - ABZR87_RS00610 0.39 -1.0 126,173 - ABZR87_RS00610 0.39 -0.3 126,173 - ABZR87_RS00610 0.39 +1.1 126,173 - ABZR87_RS00610 0.39 -0.4 126,173 - ABZR87_RS00610 0.39 +0.5 126,173 - ABZR87_RS00610 0.39 +0.7 126,173 - ABZR87_RS00610 0.39 -1.4 126,173 - ABZR87_RS00610 0.39 +0.9 126,173 - ABZR87_RS00610 0.39 +1.0
Or see this region's nucleotide sequence