Experiment: rhizosphere sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00385 and ABZR87_RS00390 are separated by 66 nucleotides ABZR87_RS00390 and ABZR87_RS00395 are separated by 220 nucleotides
ABZR87_RS00385: ABZR87_RS00385 - response regulator transcription factor, at 78,537 to 79,202
_RS00385
ABZR87_RS00390: ABZR87_RS00390 - hybrid sensor histidine kinase/response regulator, at 79,269 to 81,101
_RS00390
ABZR87_RS00395: ABZR87_RS00395 - bifunctional riboflavin kinase/FAD synthetase, at 81,322 to 82,320
_RS00395
Position (kb) 79
80
81
82 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 78.325 kb on + strand at 78.326 kb on + strand at 78.326 kb on + strand at 78.326 kb on + strand at 78.326 kb on + strand at 78.326 kb on + strand at 78.326 kb on + strand at 78.326 kb on + strand at 78.326 kb on + strand at 78.326 kb on + strand at 78.326 kb on + strand at 78.326 kb on + strand at 78.326 kb on + strand at 78.326 kb on + strand at 78.327 kb on - strand at 78.327 kb on - strand at 78.327 kb on - strand at 78.327 kb on - strand at 78.327 kb on - strand at 78.327 kb on - strand at 78.327 kb on - strand at 78.425 kb on - strand at 78.453 kb on + strand at 78.454 kb on - strand at 78.454 kb on - strand at 78.454 kb on - strand at 78.497 kb on + strand at 78.497 kb on + strand at 78.497 kb on + strand at 78.498 kb on - strand at 78.498 kb on - strand at 78.498 kb on - strand at 78.532 kb on + strand at 78.533 kb on - strand at 78.533 kb on - strand at 78.533 kb on - strand at 78.533 kb on - strand at 78.554 kb on + strand at 78.555 kb on - strand at 78.941 kb on + strand, within ABZR87_RS00385 at 78.942 kb on - strand, within ABZR87_RS00385 at 79.267 kb on + strand at 79.267 kb on + strand at 79.273 kb on + strand at 79.274 kb on - strand at 79.366 kb on + strand at 79.366 kb on + strand at 79.367 kb on - strand at 79.464 kb on + strand, within ABZR87_RS00390 at 79.464 kb on + strand, within ABZR87_RS00390 at 79.464 kb on + strand, within ABZR87_RS00390 at 79.464 kb on + strand, within ABZR87_RS00390 at 79.464 kb on + strand, within ABZR87_RS00390 at 79.464 kb on + strand, within ABZR87_RS00390 at 79.464 kb on + strand, within ABZR87_RS00390 at 79.464 kb on + strand, within ABZR87_RS00390 at 79.465 kb on - strand, within ABZR87_RS00390 at 79.465 kb on - strand, within ABZR87_RS00390 at 79.674 kb on + strand, within ABZR87_RS00390 at 79.674 kb on + strand, within ABZR87_RS00390 at 79.675 kb on - strand, within ABZR87_RS00390 at 79.675 kb on - strand, within ABZR87_RS00390 at 79.675 kb on - strand, within ABZR87_RS00390 at 79.675 kb on - strand, within ABZR87_RS00390 at 79.675 kb on - strand, within ABZR87_RS00390 at 79.675 kb on - strand, within ABZR87_RS00390 at 79.829 kb on - strand, within ABZR87_RS00390 at 79.829 kb on - strand, within ABZR87_RS00390 at 79.829 kb on - strand, within ABZR87_RS00390 at 79.888 kb on + strand, within ABZR87_RS00390 at 79.888 kb on + strand, within ABZR87_RS00390 at 79.889 kb on - strand, within ABZR87_RS00390 at 79.889 kb on - strand, within ABZR87_RS00390 at 79.889 kb on - strand, within ABZR87_RS00390 at 79.891 kb on + strand, within ABZR87_RS00390 at 79.891 kb on + strand, within ABZR87_RS00390 at 79.891 kb on + strand, within ABZR87_RS00390 at 79.891 kb on + strand, within ABZR87_RS00390 at 79.891 kb on + strand, within ABZR87_RS00390 at 79.891 kb on + strand, within ABZR87_RS00390 at 79.892 kb on - strand, within ABZR87_RS00390 at 79.892 kb on - strand, within ABZR87_RS00390 at 79.892 kb on - strand, within ABZR87_RS00390 at 80.080 kb on - strand, within ABZR87_RS00390 at 80.323 kb on - strand, within ABZR87_RS00390 at 80.560 kb on + strand, within ABZR87_RS00390 at 80.560 kb on + strand, within ABZR87_RS00390 at 80.561 kb on - strand, within ABZR87_RS00390 at 80.737 kb on + strand, within ABZR87_RS00390 at 80.737 kb on + strand, within ABZR87_RS00390 at 80.737 kb on + strand, within ABZR87_RS00390 at 80.737 kb on + strand, within ABZR87_RS00390 at 80.737 kb on + strand, within ABZR87_RS00390 at 80.738 kb on - strand, within ABZR87_RS00390 at 80.738 kb on - strand, within ABZR87_RS00390 at 80.738 kb on - strand, within ABZR87_RS00390 at 80.738 kb on - strand, within ABZR87_RS00390 at 80.860 kb on + strand, within ABZR87_RS00390 at 80.861 kb on - strand, within ABZR87_RS00390 at 81.230 kb on + strand at 81.231 kb on - strand at 81.231 kb on - strand at 81.232 kb on + strand at 81.232 kb on + strand at 81.232 kb on + strand at 81.232 kb on + strand at 81.232 kb on + strand at 81.232 kb on + strand at 81.232 kb on + strand at 81.232 kb on + strand at 81.232 kb on + strand at 81.232 kb on + strand at 81.233 kb on - strand at 81.233 kb on - strand at 81.233 kb on - strand at 81.233 kb on - strand at 81.233 kb on - strand at 81.233 kb on - strand at 81.233 kb on - strand at 81.233 kb on - strand at 81.234 kb on + strand at 81.234 kb on + strand at 81.234 kb on + strand at 81.234 kb on + strand at 81.234 kb on + strand at 81.234 kb on + strand at 81.234 kb on + strand at 81.234 kb on + strand at 81.280 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 3; outgrowth in LB remove 78,325 + +4.4 78,326 + +2.6 78,326 + +1.3 78,326 + +2.7 78,326 + +2.8 78,326 + +1.1 78,326 + +2.8 78,326 + +1.3 78,326 + +2.3 78,326 + +1.7 78,326 + +2.3 78,326 + +2.0 78,326 + +1.7 78,326 + +1.7 78,327 - +1.0 78,327 - +1.3 78,327 - +1.3 78,327 - -0.7 78,327 - +0.8 78,327 - -0.8 78,327 - -0.0 78,425 - +1.2 78,453 + +2.9 78,454 - -0.4 78,454 - +1.4 78,454 - +0.8 78,497 + +4.0 78,497 + +3.1 78,497 + +4.0 78,498 - +0.9 78,498 - +0.7 78,498 - +3.0 78,532 + +0.4 78,533 - +1.5 78,533 - +0.4 78,533 - +1.4 78,533 - +1.1 78,554 + +1.1 78,555 - +0.8 78,941 + ABZR87_RS00385 0.61 +1.0 78,942 - ABZR87_RS00385 0.61 -1.0 79,267 + +0.2 79,267 + -0.1 79,273 + -0.1 79,274 - -0.5 79,366 + -0.7 79,366 + +1.4 79,367 - +1.2 79,464 + ABZR87_RS00390 0.11 +0.1 79,464 + ABZR87_RS00390 0.11 +0.7 79,464 + ABZR87_RS00390 0.11 -1.1 79,464 + ABZR87_RS00390 0.11 +0.2 79,464 + ABZR87_RS00390 0.11 -0.0 79,464 + ABZR87_RS00390 0.11 +0.1 79,464 + ABZR87_RS00390 0.11 -0.6 79,464 + ABZR87_RS00390 0.11 +1.1 79,465 - ABZR87_RS00390 0.11 +1.1 79,465 - ABZR87_RS00390 0.11 +0.6 79,674 + ABZR87_RS00390 0.22 +1.2 79,674 + ABZR87_RS00390 0.22 +1.1 79,675 - ABZR87_RS00390 0.22 +1.1 79,675 - ABZR87_RS00390 0.22 +2.0 79,675 - ABZR87_RS00390 0.22 +0.4 79,675 - ABZR87_RS00390 0.22 +0.9 79,675 - ABZR87_RS00390 0.22 +0.9 79,675 - ABZR87_RS00390 0.22 +1.0 79,829 - ABZR87_RS00390 0.31 -0.2 79,829 - ABZR87_RS00390 0.31 +0.8 79,829 - ABZR87_RS00390 0.31 +0.7 79,888 + ABZR87_RS00390 0.34 -0.5 79,888 + ABZR87_RS00390 0.34 +0.6 79,889 - ABZR87_RS00390 0.34 +0.6 79,889 - ABZR87_RS00390 0.34 +0.9 79,889 - ABZR87_RS00390 0.34 +0.4 79,891 + ABZR87_RS00390 0.34 +1.1 79,891 + ABZR87_RS00390 0.34 +0.8 79,891 + ABZR87_RS00390 0.34 -1.1 79,891 + ABZR87_RS00390 0.34 +1.1 79,891 + ABZR87_RS00390 0.34 +1.0 79,891 + ABZR87_RS00390 0.34 +0.7 79,892 - ABZR87_RS00390 0.34 -0.6 79,892 - ABZR87_RS00390 0.34 +1.0 79,892 - ABZR87_RS00390 0.34 -0.0 80,080 - ABZR87_RS00390 0.44 -1.3 80,323 - ABZR87_RS00390 0.58 +0.9 80,560 + ABZR87_RS00390 0.70 -1.3 80,560 + ABZR87_RS00390 0.70 +1.4 80,561 - ABZR87_RS00390 0.70 +0.9 80,737 + ABZR87_RS00390 0.80 +1.6 80,737 + ABZR87_RS00390 0.80 +0.6 80,737 + ABZR87_RS00390 0.80 +0.7 80,737 + ABZR87_RS00390 0.80 +0.7 80,737 + ABZR87_RS00390 0.80 +1.1 80,738 - ABZR87_RS00390 0.80 +0.6 80,738 - ABZR87_RS00390 0.80 -0.7 80,738 - ABZR87_RS00390 0.80 +0.9 80,738 - ABZR87_RS00390 0.80 +0.1 80,860 + ABZR87_RS00390 0.87 +1.2 80,861 - ABZR87_RS00390 0.87 +0.7 81,230 + -2.7 81,231 - -0.9 81,231 - +0.3 81,232 + +1.1 81,232 + +0.1 81,232 + -0.4 81,232 + -0.8 81,232 + -0.8 81,232 + -1.2 81,232 + -1.5 81,232 + +0.7 81,232 + +0.2 81,232 + +0.2 81,233 - -1.5 81,233 - -0.3 81,233 - -1.2 81,233 - -0.7 81,233 - +2.0 81,233 - +0.1 81,233 - -0.4 81,233 - +0.0 81,234 + +1.8 81,234 + -1.0 81,234 + +0.9 81,234 + +0.6 81,234 + +1.1 81,234 + +0.4 81,234 + -0.5 81,234 + -1.8 81,280 + +0.8
Or see this region's nucleotide sequence