Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3286

Experiment: Mannan from Saccharomyces cerevisiae (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT3285 and BT3286 are separated by 106 nucleotidesBT3286 and BT3287 are separated by 35 nucleotides BT3285: BT3285 - Holliday junction DNA helicase ruvB (NCBI ptt file), at 4,202,455 to 4,203,486 BT3285 BT3286: BT3286 - conserved hypothetical protein (NCBI ptt file), at 4,203,593 to 4,204,360 BT3286 BT3287: BT3287 - polysaccharide biosynthesis protein (NCBI ptt file), at 4,204,396 to 4,205,844 BT3287 Position (kb) 4203 4204 4205Strain fitness (log2 ratio) -3 -2 -1 0 1at 4203.487 kb on + strandat 4203.487 kb on + strandat 4203.607 kb on + strandat 4203.612 kb on + strandat 4203.612 kb on + strandat 4203.618 kb on + strandat 4203.642 kb on + strandat 4203.672 kb on + strand, within BT3286at 4203.867 kb on + strand, within BT3286at 4203.997 kb on + strand, within BT3286at 4204.001 kb on + strand, within BT3286at 4204.037 kb on + strand, within BT3286at 4204.039 kb on + strand, within BT3286at 4204.268 kb on + strand, within BT3286

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Per-strain Table

Position Strand Gene LocusTag Fraction Mannan from Saccharomyces cerevisiae (C)
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4,203,487 + -2.7
4,203,487 + -2.3
4,203,607 + -2.7
4,203,612 + +0.2
4,203,612 + +0.2
4,203,618 + +0.7
4,203,642 + -0.0
4,203,672 + BT3286 0.10 +1.2
4,203,867 + BT3286 0.36 +0.0
4,203,997 + BT3286 0.53 -2.0
4,204,001 + BT3286 0.53 -0.8
4,204,037 + BT3286 0.58 -2.9
4,204,039 + BT3286 0.58 -0.4
4,204,268 + BT3286 0.88 -2.8

Or see this region's nucleotide sequence