Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3656

Experiment: Succinic Acid 31.25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3655 and Rru_A3656 are separated by 59 nucleotidesRru_A3656 and Rru_A3657 are separated by 2 nucleotides Rru_A3655: Rru_A3655 - Phosphoribosylaminoimidazolecarboxamideformyltransferase (NCBI), at 4,194,420 to 4,196,000 _A3655 Rru_A3656: Rru_A3656 - Polysaccharide biosynthesis protein CapD (NCBI), at 4,196,060 to 4,198,018 _A3656 Rru_A3657: Rru_A3657 - Glycosyl transferase, family 4 (NCBI), at 4,198,021 to 4,199,034 _A3657 Position (kb) 4196 4197 4198 4199Strain fitness (log2 ratio) -1 0 1at 4196.061 kb on + strandat 4196.061 kb on + strandat 4196.062 kb on - strandat 4196.062 kb on - strandat 4198.032 kb on - strandat 4198.032 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
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4,196,061 + -1.0
4,196,061 + -0.7
4,196,062 - -0.1
4,196,062 - -0.1
4,198,032 - -0.5
4,198,032 - +0.6

Or see this region's nucleotide sequence