Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3430

Experiment: Succinic Acid 31.25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3428 and Rru_A3429 are separated by 172 nucleotidesRru_A3429 and Rru_A3430 are separated by 171 nucleotidesRru_A3430 and Rru_A3431 are separated by 13 nucleotides Rru_A3428: Rru_A3428 - Tryptophan synthase (NCBI), at 3,945,911 to 3,946,726 _A3428 Rru_A3429: Rru_A3429 - hypothetical protein (NCBI), at 3,946,899 to 3,947,471 _A3429 Rru_A3430: Rru_A3430 - Acetyl-CoA carboxylase carboxyl transferase, beta subunit (NCBI), at 3,947,643 to 3,948,767 _A3430 Rru_A3431: Rru_A3431 - Folylpolyglutamate synthetase (NCBI), at 3,948,781 to 3,950,088 _A3431 Position (kb) 3947 3948 3949Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3946.724 kb on + strandat 3946.724 kb on + strandat 3946.725 kb on - strandat 3946.797 kb on - strandat 3946.797 kb on - strandat 3946.837 kb on - strandat 3946.847 kb on + strandat 3946.900 kb on + strandat 3946.901 kb on - strandat 3946.901 kb on - strandat 3946.901 kb on - strandat 3946.901 kb on - strandat 3946.905 kb on + strandat 3946.906 kb on - strandat 3946.906 kb on - strandat 3946.970 kb on + strand, within Rru_A3429at 3946.970 kb on + strand, within Rru_A3429at 3946.970 kb on + strand, within Rru_A3429at 3946.970 kb on + strand, within Rru_A3429at 3946.970 kb on + strand, within Rru_A3429at 3946.971 kb on - strand, within Rru_A3429at 3946.971 kb on - strand, within Rru_A3429at 3946.971 kb on - strand, within Rru_A3429at 3946.971 kb on - strand, within Rru_A3429at 3946.971 kb on - strand, within Rru_A3429at 3946.971 kb on - strand, within Rru_A3429at 3946.971 kb on - strand, within Rru_A3429at 3946.971 kb on - strand, within Rru_A3429at 3946.971 kb on - strand, within Rru_A3429at 3946.972 kb on + strand, within Rru_A3429at 3946.973 kb on - strand, within Rru_A3429at 3946.973 kb on - strand, within Rru_A3429at 3947.241 kb on + strand, within Rru_A3429at 3947.241 kb on + strand, within Rru_A3429at 3947.241 kb on + strand, within Rru_A3429at 3947.242 kb on - strand, within Rru_A3429at 3947.242 kb on - strand, within Rru_A3429at 3947.242 kb on - strand, within Rru_A3429at 3947.248 kb on + strand, within Rru_A3429at 3947.249 kb on - strand, within Rru_A3429at 3947.382 kb on + strand, within Rru_A3429at 3947.382 kb on + strand, within Rru_A3429at 3947.382 kb on + strand, within Rru_A3429at 3947.382 kb on + strand, within Rru_A3429at 3947.382 kb on + strand, within Rru_A3429at 3947.383 kb on - strand, within Rru_A3429at 3947.383 kb on - strand, within Rru_A3429at 3947.383 kb on - strand, within Rru_A3429at 3947.383 kb on - strand, within Rru_A3429at 3947.383 kb on - strand, within Rru_A3429at 3947.383 kb on - strand, within Rru_A3429at 3947.383 kb on - strand, within Rru_A3429at 3947.383 kb on - strand, within Rru_A3429at 3947.454 kb on + strandat 3947.454 kb on + strandat 3947.454 kb on + strandat 3947.454 kb on + strandat 3947.455 kb on - strandat 3947.455 kb on - strandat 3947.455 kb on - strandat 3947.579 kb on + strandat 3947.579 kb on + strandat 3947.579 kb on + strandat 3947.579 kb on + strandat 3947.580 kb on - strandat 3947.580 kb on - strandat 3947.684 kb on + strandat 3947.684 kb on + strandat 3947.710 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
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3,946,724 + -0.9
3,946,724 + -0.0
3,946,725 - -0.5
3,946,797 - -0.1
3,946,797 - -0.2
3,946,837 - +1.3
3,946,847 + +0.2
3,946,900 + +0.3
3,946,901 - +0.1
3,946,901 - -0.2
3,946,901 - -1.0
3,946,901 - -0.7
3,946,905 + -1.4
3,946,906 - -0.3
3,946,906 - +0.9
3,946,970 + Rru_A3429 0.12 -0.7
3,946,970 + Rru_A3429 0.12 +1.0
3,946,970 + Rru_A3429 0.12 -0.1
3,946,970 + Rru_A3429 0.12 -0.1
3,946,970 + Rru_A3429 0.12 +2.0
3,946,971 - Rru_A3429 0.13 -0.6
3,946,971 - Rru_A3429 0.13 -0.2
3,946,971 - Rru_A3429 0.13 -0.4
3,946,971 - Rru_A3429 0.13 -0.9
3,946,971 - Rru_A3429 0.13 -3.7
3,946,971 - Rru_A3429 0.13 -0.9
3,946,971 - Rru_A3429 0.13 -0.9
3,946,971 - Rru_A3429 0.13 +0.3
3,946,971 - Rru_A3429 0.13 -0.5
3,946,972 + Rru_A3429 0.13 -3.0
3,946,973 - Rru_A3429 0.13 +0.6
3,946,973 - Rru_A3429 0.13 -0.3
3,947,241 + Rru_A3429 0.60 +0.7
3,947,241 + Rru_A3429 0.60 -2.2
3,947,241 + Rru_A3429 0.60 -1.8
3,947,242 - Rru_A3429 0.60 +0.1
3,947,242 - Rru_A3429 0.60 +0.1
3,947,242 - Rru_A3429 0.60 +0.4
3,947,248 + Rru_A3429 0.61 +0.0
3,947,249 - Rru_A3429 0.61 -1.2
3,947,382 + Rru_A3429 0.84 +0.0
3,947,382 + Rru_A3429 0.84 +0.0
3,947,382 + Rru_A3429 0.84 +1.9
3,947,382 + Rru_A3429 0.84 +0.3
3,947,382 + Rru_A3429 0.84 +1.3
3,947,383 - Rru_A3429 0.84 +1.0
3,947,383 - Rru_A3429 0.84 -0.5
3,947,383 - Rru_A3429 0.84 -0.6
3,947,383 - Rru_A3429 0.84 -0.8
3,947,383 - Rru_A3429 0.84 -0.7
3,947,383 - Rru_A3429 0.84 -0.7
3,947,383 - Rru_A3429 0.84 +0.1
3,947,383 - Rru_A3429 0.84 -1.2
3,947,454 + +0.1
3,947,454 + -1.0
3,947,454 + -0.9
3,947,454 + -0.7
3,947,455 - -0.6
3,947,455 - -0.3
3,947,455 - +0.3
3,947,579 + -0.6
3,947,579 + -1.4
3,947,579 + -1.6
3,947,579 + +0.1
3,947,580 - +0.2
3,947,580 - +3.0
3,947,684 + -3.0
3,947,684 + +0.3
3,947,710 + -0.8

Or see this region's nucleotide sequence