Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3398

Experiment: Succinic Acid 31.25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3396 and Rru_A3397 overlap by 1 nucleotidesRru_A3397 and Rru_A3398 are separated by 98 nucleotidesRru_A3398 and Rru_A3399 are separated by 244 nucleotidesRru_A3399 and Rru_A3400 are separated by 222 nucleotides Rru_A3396: Rru_A3396 - Autoinducer synthesis protein (NCBI), at 3,913,528 to 3,914,148 _A3396 Rru_A3397: Rru_A3397 - hypothetical protein (NCBI), at 3,914,148 to 3,914,399 _A3397 Rru_A3398: Rru_A3398 - Transcriptional Regulator, XRE family (NCBI), at 3,914,498 to 3,915,040 _A3398 Rru_A3399: Rru_A3399 - Transcriptional Regulator, BadM/Rrf2 family (NCBI), at 3,915,285 to 3,915,767 _A3399 Rru_A3400: Rru_A3400 - Thiosulphate-binding protein (NCBI), at 3,915,990 to 3,917,054 _A3400 Position (kb) 3914 3915 3916Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3913.500 kb on - strandat 3913.687 kb on + strand, within Rru_A3396at 3913.687 kb on + strand, within Rru_A3396at 3913.687 kb on + strand, within Rru_A3396at 3913.687 kb on + strand, within Rru_A3396at 3913.687 kb on + strand, within Rru_A3396at 3913.688 kb on - strand, within Rru_A3396at 3913.688 kb on - strand, within Rru_A3396at 3913.689 kb on + strand, within Rru_A3396at 3913.689 kb on + strand, within Rru_A3396at 3913.690 kb on - strand, within Rru_A3396at 3913.743 kb on + strand, within Rru_A3396at 3913.743 kb on + strand, within Rru_A3396at 3913.858 kb on + strand, within Rru_A3396at 3913.858 kb on + strand, within Rru_A3396at 3913.859 kb on - strand, within Rru_A3396at 3913.859 kb on - strand, within Rru_A3396at 3913.859 kb on - strand, within Rru_A3396at 3913.912 kb on + strand, within Rru_A3396at 3913.912 kb on + strand, within Rru_A3396at 3913.913 kb on - strand, within Rru_A3396at 3913.939 kb on + strand, within Rru_A3396at 3913.940 kb on - strand, within Rru_A3396at 3913.940 kb on - strand, within Rru_A3396at 3914.157 kb on + strandat 3914.265 kb on + strand, within Rru_A3397at 3914.265 kb on + strand, within Rru_A3397at 3914.266 kb on - strand, within Rru_A3397at 3914.580 kb on + strand, within Rru_A3398at 3914.581 kb on - strand, within Rru_A3398at 3914.945 kb on - strand, within Rru_A3398at 3915.057 kb on - strandat 3915.121 kb on + strandat 3915.249 kb on - strandat 3915.258 kb on - strandat 3915.289 kb on + strandat 3915.290 kb on - strandat 3915.306 kb on + strandat 3915.386 kb on + strand, within Rru_A3399at 3915.386 kb on + strand, within Rru_A3399at 3915.387 kb on - strand, within Rru_A3399at 3915.472 kb on - strand, within Rru_A3399at 3915.498 kb on - strand, within Rru_A3399at 3915.498 kb on - strand, within Rru_A3399at 3915.636 kb on + strand, within Rru_A3399at 3915.798 kb on - strandat 3915.910 kb on + strandat 3915.910 kb on + strandat 3915.911 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
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3,913,500 - +0.2
3,913,687 + Rru_A3396 0.26 -1.2
3,913,687 + Rru_A3396 0.26 +0.0
3,913,687 + Rru_A3396 0.26 +0.4
3,913,687 + Rru_A3396 0.26 -0.1
3,913,687 + Rru_A3396 0.26 +0.6
3,913,688 - Rru_A3396 0.26 +0.3
3,913,688 - Rru_A3396 0.26 +0.5
3,913,689 + Rru_A3396 0.26 +0.8
3,913,689 + Rru_A3396 0.26 +0.4
3,913,690 - Rru_A3396 0.26 -1.1
3,913,743 + Rru_A3396 0.35 +0.2
3,913,743 + Rru_A3396 0.35 +0.2
3,913,858 + Rru_A3396 0.53 +0.5
3,913,858 + Rru_A3396 0.53 +0.6
3,913,859 - Rru_A3396 0.53 -0.7
3,913,859 - Rru_A3396 0.53 +0.1
3,913,859 - Rru_A3396 0.53 -1.1
3,913,912 + Rru_A3396 0.62 -0.3
3,913,912 + Rru_A3396 0.62 +0.8
3,913,913 - Rru_A3396 0.62 +1.5
3,913,939 + Rru_A3396 0.66 +2.5
3,913,940 - Rru_A3396 0.66 -2.5
3,913,940 - Rru_A3396 0.66 -1.4
3,914,157 + +0.2
3,914,265 + Rru_A3397 0.46 -1.4
3,914,265 + Rru_A3397 0.46 -2.3
3,914,266 - Rru_A3397 0.47 -1.4
3,914,580 + Rru_A3398 0.15 -1.5
3,914,581 - Rru_A3398 0.15 -1.2
3,914,945 - Rru_A3398 0.82 +0.2
3,915,057 - -0.5
3,915,121 + -0.9
3,915,249 - -2.8
3,915,258 - -1.8
3,915,289 + -2.4
3,915,290 - -0.9
3,915,306 + -0.8
3,915,386 + Rru_A3399 0.21 -1.7
3,915,386 + Rru_A3399 0.21 -1.2
3,915,387 - Rru_A3399 0.21 -1.3
3,915,472 - Rru_A3399 0.39 -0.6
3,915,498 - Rru_A3399 0.44 -1.2
3,915,498 - Rru_A3399 0.44 -0.2
3,915,636 + Rru_A3399 0.73 -0.5
3,915,798 - -0.7
3,915,910 + -1.9
3,915,910 + +0.6
3,915,911 - +1.3

Or see this region's nucleotide sequence