Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3385

Experiment: Succinic Acid 31.25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3383 and Rru_A3384 overlap by 4 nucleotidesRru_A3384 and Rru_A3385 are separated by 120 nucleotidesRru_A3385 and Rru_A3386 are separated by 253 nucleotidesRru_A3386 and Rru_A3387 are separated by 34 nucleotides Rru_A3383: Rru_A3383 - Cobalamin (vitamin B12) biosynthesis CbiG protein (NCBI), at 3,900,020 to 3,901,414 _A3383 Rru_A3384: Rru_A3384 - Precorrin-4 C11-methyltransferase region (NCBI), at 3,901,411 to 3,902,172 _A3384 Rru_A3385: Rru_A3385 - OmpA/MotB (NCBI), at 3,902,293 to 3,903,021 _A3385 Rru_A3386: Rru_A3386 - BioY protein (NCBI), at 3,903,275 to 3,903,823 _A3386 Rru_A3387: Rru_A3387 - Acetyl-CoA C-acetyltransferase (NCBI), at 3,903,858 to 3,905,018 _A3387 Position (kb) 3902 3903 3904Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 3901.580 kb on + strand, within Rru_A3384at 3901.669 kb on + strand, within Rru_A3384at 3901.669 kb on + strand, within Rru_A3384at 3901.669 kb on + strand, within Rru_A3384at 3901.720 kb on + strand, within Rru_A3384at 3901.747 kb on + strand, within Rru_A3384at 3901.821 kb on + strand, within Rru_A3384at 3901.821 kb on + strand, within Rru_A3384at 3901.822 kb on - strand, within Rru_A3384at 3901.822 kb on - strand, within Rru_A3384at 3901.822 kb on - strand, within Rru_A3384at 3901.905 kb on - strand, within Rru_A3384at 3901.905 kb on - strand, within Rru_A3384at 3901.905 kb on - strand, within Rru_A3384at 3901.951 kb on + strand, within Rru_A3384at 3901.981 kb on + strand, within Rru_A3384at 3902.128 kb on + strandat 3902.129 kb on - strandat 3902.129 kb on - strandat 3902.129 kb on - strandat 3902.228 kb on - strandat 3902.429 kb on - strand, within Rru_A3385at 3902.429 kb on - strand, within Rru_A3385at 3902.476 kb on + strand, within Rru_A3385at 3902.477 kb on - strand, within Rru_A3385at 3903.017 kb on + strandat 3903.017 kb on + strandat 3903.017 kb on + strandat 3903.017 kb on + strandat 3903.017 kb on + strandat 3903.018 kb on - strandat 3903.018 kb on - strandat 3903.468 kb on + strand, within Rru_A3386at 3903.659 kb on + strand, within Rru_A3386at 3903.659 kb on + strand, within Rru_A3386at 3903.660 kb on - strand, within Rru_A3386at 3903.678 kb on - strand, within Rru_A3386

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
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3,901,580 + Rru_A3384 0.22 -0.9
3,901,669 + Rru_A3384 0.34 +0.2
3,901,669 + Rru_A3384 0.34 -1.8
3,901,669 + Rru_A3384 0.34 -3.8
3,901,720 + Rru_A3384 0.41 -4.0
3,901,747 + Rru_A3384 0.44 -3.1
3,901,821 + Rru_A3384 0.54 -2.8
3,901,821 + Rru_A3384 0.54 -1.4
3,901,822 - Rru_A3384 0.54 -5.0
3,901,822 - Rru_A3384 0.54 -1.7
3,901,822 - Rru_A3384 0.54 -3.3
3,901,905 - Rru_A3384 0.65 -2.4
3,901,905 - Rru_A3384 0.65 -4.5
3,901,905 - Rru_A3384 0.65 -2.0
3,901,951 + Rru_A3384 0.71 -2.7
3,901,981 + Rru_A3384 0.75 -3.1
3,902,128 + -1.5
3,902,129 - -4.6
3,902,129 - -1.6
3,902,129 - -0.4
3,902,228 - -0.7
3,902,429 - Rru_A3385 0.19 +0.9
3,902,429 - Rru_A3385 0.19 -0.2
3,902,476 + Rru_A3385 0.25 -1.9
3,902,477 - Rru_A3385 0.25 -1.1
3,903,017 + -0.8
3,903,017 + -0.8
3,903,017 + -0.3
3,903,017 + +0.9
3,903,017 + +0.7
3,903,018 - +0.0
3,903,018 - -0.4
3,903,468 + Rru_A3386 0.35 +0.5
3,903,659 + Rru_A3386 0.70 -0.7
3,903,659 + Rru_A3386 0.70 -0.2
3,903,660 - Rru_A3386 0.70 -0.5
3,903,678 - Rru_A3386 0.73 -2.0

Or see this region's nucleotide sequence