Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3186

Experiment: Succinic Acid 31.25 mM; anaerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A3184 and Rru_A3185 overlap by 4 nucleotidesRru_A3185 and Rru_A3186 are separated by 118 nucleotidesRru_A3186 and Rru_A3187 are separated by 3 nucleotidesRru_A3187 and Rru_A3188 are separated by 44 nucleotides Rru_A3184: Rru_A3184 - hypothetical protein (NCBI), at 3,674,730 to 3,675,626 _A3184 Rru_A3185: Rru_A3185 - hypothetical protein (NCBI), at 3,675,623 to 3,675,934 _A3185 Rru_A3186: Rru_A3186 - hypothetical protein (NCBI), at 3,676,053 to 3,676,460 _A3186 Rru_A3187: Rru_A3187 - Two component Transcriptional regulator, Winged helix family (NCBI), at 3,676,464 to 3,677,153 _A3187 Rru_A3188: Rru_A3188 - Histidine Kinase (NCBI), at 3,677,198 to 3,678,568 _A3188 Position (kb) 3676 3677Strain fitness (log2 ratio) -2 -1 0 1 2at 3675.334 kb on - strand, within Rru_A3184at 3675.514 kb on + strand, within Rru_A3184at 3675.538 kb on + strandat 3675.542 kb on + strandat 3675.542 kb on + strandat 3675.542 kb on + strandat 3675.543 kb on - strandat 3675.543 kb on - strandat 3675.543 kb on - strandat 3675.543 kb on - strandat 3675.562 kb on + strandat 3675.562 kb on + strandat 3675.562 kb on + strandat 3675.563 kb on - strandat 3675.563 kb on - strandat 3675.563 kb on - strandat 3676.041 kb on - strandat 3676.363 kb on - strand, within Rru_A3186at 3676.363 kb on - strand, within Rru_A3186at 3676.363 kb on - strand, within Rru_A3186at 3676.363 kb on - strand, within Rru_A3186at 3676.458 kb on + strandat 3676.458 kb on + strandat 3676.459 kb on - strandat 3676.755 kb on + strand, within Rru_A3187at 3676.755 kb on + strand, within Rru_A3187at 3676.755 kb on + strand, within Rru_A3187at 3676.755 kb on + strand, within Rru_A3187at 3676.756 kb on - strand, within Rru_A3187at 3676.756 kb on - strand, within Rru_A3187at 3676.869 kb on - strand, within Rru_A3187at 3676.926 kb on + strand, within Rru_A3187at 3676.941 kb on + strand, within Rru_A3187at 3676.941 kb on + strand, within Rru_A3187at 3676.941 kb on + strand, within Rru_A3187at 3676.941 kb on + strand, within Rru_A3187at 3676.941 kb on + strand, within Rru_A3187at 3676.941 kb on + strand, within Rru_A3187at 3676.941 kb on + strand, within Rru_A3187at 3676.942 kb on - strand, within Rru_A3187at 3676.942 kb on - strand, within Rru_A3187at 3676.942 kb on - strand, within Rru_A3187at 3676.942 kb on - strand, within Rru_A3187at 3676.969 kb on + strand, within Rru_A3187at 3676.998 kb on + strand, within Rru_A3187at 3676.998 kb on + strand, within Rru_A3187at 3676.998 kb on + strand, within Rru_A3187at 3676.998 kb on + strand, within Rru_A3187at 3676.998 kb on + strand, within Rru_A3187at 3677.229 kb on - strandat 3677.229 kb on - strandat 3677.243 kb on + strandat 3677.244 kb on - strandat 3677.338 kb on + strand, within Rru_A3188at 3677.388 kb on - strand, within Rru_A3188at 3677.399 kb on + strand, within Rru_A3188at 3677.400 kb on - strand, within Rru_A3188at 3677.400 kb on - strand, within Rru_A3188

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
remove
3,675,334 - Rru_A3184 0.67 -0.9
3,675,514 + Rru_A3184 0.87 -0.4
3,675,538 + -2.2
3,675,542 + -0.7
3,675,542 + +0.6
3,675,542 + -0.1
3,675,543 - -0.6
3,675,543 - -0.2
3,675,543 - +0.2
3,675,543 - +0.4
3,675,562 + -0.9
3,675,562 + -0.3
3,675,562 + -1.0
3,675,563 - +0.5
3,675,563 - +0.3
3,675,563 - -1.7
3,676,041 - +0.1
3,676,363 - Rru_A3186 0.76 +0.7
3,676,363 - Rru_A3186 0.76 -2.4
3,676,363 - Rru_A3186 0.76 +0.9
3,676,363 - Rru_A3186 0.76 -0.7
3,676,458 + -0.4
3,676,458 + -2.1
3,676,459 - +0.2
3,676,755 + Rru_A3187 0.42 -0.5
3,676,755 + Rru_A3187 0.42 -0.7
3,676,755 + Rru_A3187 0.42 -1.2
3,676,755 + Rru_A3187 0.42 +0.8
3,676,756 - Rru_A3187 0.42 +0.0
3,676,756 - Rru_A3187 0.42 +0.8
3,676,869 - Rru_A3187 0.59 +0.7
3,676,926 + Rru_A3187 0.67 +0.3
3,676,941 + Rru_A3187 0.69 +0.2
3,676,941 + Rru_A3187 0.69 -1.3
3,676,941 + Rru_A3187 0.69 +0.0
3,676,941 + Rru_A3187 0.69 -1.1
3,676,941 + Rru_A3187 0.69 +0.3
3,676,941 + Rru_A3187 0.69 +1.0
3,676,941 + Rru_A3187 0.69 +0.8
3,676,942 - Rru_A3187 0.69 -0.9
3,676,942 - Rru_A3187 0.69 -0.2
3,676,942 - Rru_A3187 0.69 +0.1
3,676,942 - Rru_A3187 0.69 +0.9
3,676,969 + Rru_A3187 0.73 +2.5
3,676,998 + Rru_A3187 0.77 -0.7
3,676,998 + Rru_A3187 0.77 -0.3
3,676,998 + Rru_A3187 0.77 -0.3
3,676,998 + Rru_A3187 0.77 -1.1
3,676,998 + Rru_A3187 0.77 -0.4
3,677,229 - -1.3
3,677,229 - +0.7
3,677,243 + -0.7
3,677,244 - -0.1
3,677,338 + Rru_A3188 0.10 +0.4
3,677,388 - Rru_A3188 0.14 +1.0
3,677,399 + Rru_A3188 0.15 -0.3
3,677,400 - Rru_A3188 0.15 +0.4
3,677,400 - Rru_A3188 0.15 +0.4

Or see this region's nucleotide sequence