Experiment: Succinic Acid 31.25 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3163 and Rru_A3164 are separated by 159 nucleotides Rru_A3164 and Rru_A3165 are separated by 72 nucleotides Rru_A3165 and Rru_A3166 are separated by 87 nucleotides
Rru_A3163: Rru_A3163 - 3-deoxy-D-manno-octulosonate cytidylyltransferase (NCBI), at 3,654,705 to 3,655,505
_A3163
Rru_A3164: Rru_A3164 - hypothetical protein (NCBI), at 3,655,665 to 3,656,663
_A3164
Rru_A3165: Rru_A3165 - Histidinol-phosphate phosphatase, putative, inositol monophosphatase (NCBI), at 3,656,736 to 3,657,527
_A3165
Rru_A3166: Rru_A3166 - extracellular solute-binding protein, family 5 (NCBI), at 3,657,615 to 3,659,462
_A3166
Position (kb)
3655
3656
3657 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3655.554 kb on + strand at 3655.661 kb on + strand at 3655.661 kb on + strand at 3655.661 kb on + strand at 3655.661 kb on + strand at 3655.661 kb on + strand at 3655.662 kb on - strand at 3655.662 kb on - strand at 3656.039 kb on + strand, within Rru_A3164 at 3656.426 kb on - strand, within Rru_A3164 at 3656.426 kb on - strand, within Rru_A3164 at 3656.646 kb on + strand at 3656.646 kb on + strand at 3656.647 kb on - strand at 3656.647 kb on - strand at 3656.661 kb on + strand at 3656.789 kb on - strand at 3657.198 kb on + strand, within Rru_A3165 at 3657.198 kb on + strand, within Rru_A3165 at 3657.200 kb on + strand, within Rru_A3165 at 3657.201 kb on - strand, within Rru_A3165 at 3657.201 kb on - strand, within Rru_A3165 at 3657.201 kb on - strand, within Rru_A3165 at 3657.297 kb on + strand, within Rru_A3165 at 3657.304 kb on - strand, within Rru_A3165 at 3657.360 kb on + strand, within Rru_A3165 at 3657.360 kb on + strand, within Rru_A3165 at 3657.366 kb on + strand, within Rru_A3165 at 3657.589 kb on + strand at 3657.589 kb on + strand at 3657.590 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic remove 3,655,554 + +0.9 3,655,661 + -0.7 3,655,661 + +0.2 3,655,661 + -0.1 3,655,661 + +0.0 3,655,661 + +0.1 3,655,662 - -0.3 3,655,662 - +0.8 3,656,039 + Rru_A3164 0.37 -1.0 3,656,426 - Rru_A3164 0.76 -2.1 3,656,426 - Rru_A3164 0.76 -0.1 3,656,646 + +0.6 3,656,646 + -0.2 3,656,647 - +0.1 3,656,647 - -0.1 3,656,661 + +0.6 3,656,789 - -2.1 3,657,198 + Rru_A3165 0.58 -2.4 3,657,198 + Rru_A3165 0.58 -2.1 3,657,200 + Rru_A3165 0.59 -0.9 3,657,201 - Rru_A3165 0.59 -2.3 3,657,201 - Rru_A3165 0.59 -2.1 3,657,201 - Rru_A3165 0.59 -2.6 3,657,297 + Rru_A3165 0.71 -1.2 3,657,304 - Rru_A3165 0.72 -0.4 3,657,360 + Rru_A3165 0.79 +0.2 3,657,360 + Rru_A3165 0.79 -3.4 3,657,366 + Rru_A3165 0.80 -2.9 3,657,589 + -2.9 3,657,589 + +2.0 3,657,590 - -3.1
Or see this region's nucleotide sequence