Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3164

Experiment: Succinic Acid 31.25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3163 and Rru_A3164 are separated by 159 nucleotidesRru_A3164 and Rru_A3165 are separated by 72 nucleotidesRru_A3165 and Rru_A3166 are separated by 87 nucleotides Rru_A3163: Rru_A3163 - 3-deoxy-D-manno-octulosonate cytidylyltransferase (NCBI), at 3,654,705 to 3,655,505 _A3163 Rru_A3164: Rru_A3164 - hypothetical protein (NCBI), at 3,655,665 to 3,656,663 _A3164 Rru_A3165: Rru_A3165 - Histidinol-phosphate phosphatase, putative, inositol monophosphatase (NCBI), at 3,656,736 to 3,657,527 _A3165 Rru_A3166: Rru_A3166 - extracellular solute-binding protein, family 5 (NCBI), at 3,657,615 to 3,659,462 _A3166 Position (kb) 3655 3656 3657Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3655.554 kb on + strandat 3655.661 kb on + strandat 3655.661 kb on + strandat 3655.661 kb on + strandat 3655.661 kb on + strandat 3655.661 kb on + strandat 3655.662 kb on - strandat 3655.662 kb on - strandat 3656.039 kb on + strand, within Rru_A3164at 3656.426 kb on - strand, within Rru_A3164at 3656.426 kb on - strand, within Rru_A3164at 3656.646 kb on + strandat 3656.646 kb on + strandat 3656.647 kb on - strandat 3656.647 kb on - strandat 3656.661 kb on + strandat 3656.789 kb on - strandat 3657.198 kb on + strand, within Rru_A3165at 3657.198 kb on + strand, within Rru_A3165at 3657.200 kb on + strand, within Rru_A3165at 3657.201 kb on - strand, within Rru_A3165at 3657.201 kb on - strand, within Rru_A3165at 3657.201 kb on - strand, within Rru_A3165at 3657.297 kb on + strand, within Rru_A3165at 3657.304 kb on - strand, within Rru_A3165at 3657.360 kb on + strand, within Rru_A3165at 3657.360 kb on + strand, within Rru_A3165at 3657.366 kb on + strand, within Rru_A3165at 3657.589 kb on + strandat 3657.589 kb on + strandat 3657.590 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
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3,655,554 + +0.9
3,655,661 + -0.7
3,655,661 + +0.2
3,655,661 + -0.1
3,655,661 + +0.0
3,655,661 + +0.1
3,655,662 - -0.3
3,655,662 - +0.8
3,656,039 + Rru_A3164 0.37 -1.0
3,656,426 - Rru_A3164 0.76 -2.1
3,656,426 - Rru_A3164 0.76 -0.1
3,656,646 + +0.6
3,656,646 + -0.2
3,656,647 - +0.1
3,656,647 - -0.1
3,656,661 + +0.6
3,656,789 - -2.1
3,657,198 + Rru_A3165 0.58 -2.4
3,657,198 + Rru_A3165 0.58 -2.1
3,657,200 + Rru_A3165 0.59 -0.9
3,657,201 - Rru_A3165 0.59 -2.3
3,657,201 - Rru_A3165 0.59 -2.1
3,657,201 - Rru_A3165 0.59 -2.6
3,657,297 + Rru_A3165 0.71 -1.2
3,657,304 - Rru_A3165 0.72 -0.4
3,657,360 + Rru_A3165 0.79 +0.2
3,657,360 + Rru_A3165 0.79 -3.4
3,657,366 + Rru_A3165 0.80 -2.9
3,657,589 + -2.9
3,657,589 + +2.0
3,657,590 - -3.1

Or see this region's nucleotide sequence