Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2712

Experiment: Succinic Acid 31.25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2710 and Rru_A2711 are separated by 19 nucleotidesRru_A2711 and Rru_A2712 overlap by 16 nucleotidesRru_A2712 and Rru_A2713 are separated by 17 nucleotidesRru_A2713 and Rru_A2714 are separated by 654 nucleotides Rru_A2710: Rru_A2710 - Gram negative topoisomerase IV, subunit B (NCBI), at 3,131,976 to 3,133,973 _A2710 Rru_A2711: Rru_A2711 - GCN5-related N-acetyltransferase (NCBI), at 3,133,993 to 3,134,505 _A2711 Rru_A2712: Rru_A2712 - Transcriptional Regulator, TetR family (NCBI), at 3,134,490 to 3,135,110 _A2712 Rru_A2713: Rru_A2713 - hypothetical protein (NCBI), at 3,135,128 to 3,135,394 _A2713 Rru_A2714: Rru_A2714 - hypothetical protein (NCBI), at 3,136,049 to 3,137,098 _A2714 Position (kb) 3134 3135 3136Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3133.994 kb on + strandat 3133.994 kb on + strandat 3133.994 kb on + strandat 3133.994 kb on + strandat 3133.995 kb on - strandat 3133.995 kb on - strandat 3133.995 kb on - strandat 3133.995 kb on - strandat 3134.081 kb on + strand, within Rru_A2711at 3134.082 kb on - strand, within Rru_A2711at 3134.082 kb on - strand, within Rru_A2711at 3134.082 kb on - strand, within Rru_A2711at 3134.128 kb on + strand, within Rru_A2711at 3134.128 kb on + strand, within Rru_A2711at 3134.129 kb on - strand, within Rru_A2711at 3134.129 kb on - strand, within Rru_A2711at 3134.360 kb on + strand, within Rru_A2711at 3134.361 kb on - strand, within Rru_A2711at 3134.372 kb on + strand, within Rru_A2711at 3134.373 kb on - strand, within Rru_A2711at 3134.375 kb on + strand, within Rru_A2711at 3134.375 kb on + strand, within Rru_A2711at 3134.375 kb on + strand, within Rru_A2711at 3134.375 kb on + strand, within Rru_A2711at 3134.376 kb on - strand, within Rru_A2711at 3134.376 kb on - strand, within Rru_A2711at 3134.376 kb on - strand, within Rru_A2711at 3134.376 kb on - strand, within Rru_A2711at 3134.984 kb on - strand, within Rru_A2712at 3134.984 kb on - strand, within Rru_A2712at 3135.124 kb on - strandat 3135.124 kb on - strandat 3135.124 kb on - strandat 3135.193 kb on - strand, within Rru_A2713at 3135.352 kb on + strand, within Rru_A2713at 3135.585 kb on + strandat 3135.585 kb on + strandat 3135.585 kb on + strandat 3135.586 kb on - strandat 3135.644 kb on + strandat 3135.645 kb on - strandat 3135.645 kb on - strandat 3135.897 kb on - strandat 3135.974 kb on + strandat 3135.975 kb on - strandat 3136.025 kb on - strandat 3136.065 kb on + strandat 3136.065 kb on + strandat 3136.065 kb on + strandat 3136.065 kb on + strandat 3136.066 kb on - strandat 3136.066 kb on - strandat 3136.066 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
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3,133,994 + +0.2
3,133,994 + -1.1
3,133,994 + -0.6
3,133,994 + -0.4
3,133,995 - -0.1
3,133,995 - -0.9
3,133,995 - -0.3
3,133,995 - -1.1
3,134,081 + Rru_A2711 0.17 +0.0
3,134,082 - Rru_A2711 0.17 +1.3
3,134,082 - Rru_A2711 0.17 -0.0
3,134,082 - Rru_A2711 0.17 -0.5
3,134,128 + Rru_A2711 0.26 -0.7
3,134,128 + Rru_A2711 0.26 -1.3
3,134,129 - Rru_A2711 0.27 +3.2
3,134,129 - Rru_A2711 0.27 +0.3
3,134,360 + Rru_A2711 0.72 -1.2
3,134,361 - Rru_A2711 0.72 -0.4
3,134,372 + Rru_A2711 0.74 -0.0
3,134,373 - Rru_A2711 0.74 +0.1
3,134,375 + Rru_A2711 0.74 +0.9
3,134,375 + Rru_A2711 0.74 -0.2
3,134,375 + Rru_A2711 0.74 -0.8
3,134,375 + Rru_A2711 0.74 +0.1
3,134,376 - Rru_A2711 0.75 -0.3
3,134,376 - Rru_A2711 0.75 -0.2
3,134,376 - Rru_A2711 0.75 +0.3
3,134,376 - Rru_A2711 0.75 -1.8
3,134,984 - Rru_A2712 0.80 -0.4
3,134,984 - Rru_A2712 0.80 +0.5
3,135,124 - -0.1
3,135,124 - -0.4
3,135,124 - -1.8
3,135,193 - Rru_A2713 0.24 -1.0
3,135,352 + Rru_A2713 0.84 -0.3
3,135,585 + +1.8
3,135,585 + -0.3
3,135,585 + -0.0
3,135,586 - -0.2
3,135,644 + +0.3
3,135,645 - +0.2
3,135,645 - -0.1
3,135,897 - -1.5
3,135,974 + -1.1
3,135,975 - +0.3
3,136,025 - +0.3
3,136,065 + -0.1
3,136,065 + -0.1
3,136,065 + -0.2
3,136,065 + +0.3
3,136,066 - +1.2
3,136,066 - -0.0
3,136,066 - +0.4

Or see this region's nucleotide sequence