Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2370

Experiment: Succinic Acid 31.25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2369 and Rru_A2370 are separated by 295 nucleotidesRru_A2370 and Rru_A2371 are separated by 216 nucleotides Rru_A2369: Rru_A2369 - hypothetical protein (NCBI), at 2,760,689 to 2,761,843 _A2369 Rru_A2370: Rru_A2370 - GCN5-related N-acetyltransferase (NCBI), at 2,762,139 to 2,762,711 _A2370 Rru_A2371: Rru_A2371 - hydroxyacylglutathione hydrolase (NCBI), at 2,762,928 to 2,764,355 _A2371 Position (kb) 2762 2763Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2761.167 kb on + strand, within Rru_A2369at 2761.167 kb on + strand, within Rru_A2369at 2761.167 kb on + strand, within Rru_A2369at 2761.168 kb on - strand, within Rru_A2369at 2761.477 kb on + strand, within Rru_A2369at 2761.477 kb on + strand, within Rru_A2369at 2761.478 kb on - strand, within Rru_A2369at 2761.479 kb on + strand, within Rru_A2369at 2761.480 kb on - strand, within Rru_A2369at 2761.903 kb on - strandat 2762.103 kb on - strandat 2762.117 kb on + strandat 2762.117 kb on + strandat 2762.117 kb on + strandat 2762.117 kb on + strandat 2762.118 kb on - strandat 2762.118 kb on - strandat 2762.118 kb on - strandat 2762.236 kb on - strand, within Rru_A2370at 2762.498 kb on + strand, within Rru_A2370at 2762.499 kb on - strand, within Rru_A2370at 2762.526 kb on + strand, within Rru_A2370at 2762.741 kb on + strandat 2762.741 kb on + strandat 2762.787 kb on + strandat 2763.102 kb on + strand, within Rru_A2371at 2763.102 kb on + strand, within Rru_A2371at 2763.103 kb on - strand, within Rru_A2371at 2763.279 kb on + strand, within Rru_A2371at 2763.279 kb on + strand, within Rru_A2371at 2763.279 kb on + strand, within Rru_A2371at 2763.280 kb on - strand, within Rru_A2371

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
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2,761,167 + Rru_A2369 0.41 -0.3
2,761,167 + Rru_A2369 0.41 -0.9
2,761,167 + Rru_A2369 0.41 +0.9
2,761,168 - Rru_A2369 0.41 -0.1
2,761,477 + Rru_A2369 0.68 +0.3
2,761,477 + Rru_A2369 0.68 +0.8
2,761,478 - Rru_A2369 0.68 -0.2
2,761,479 + Rru_A2369 0.68 +0.2
2,761,480 - Rru_A2369 0.68 -0.2
2,761,903 - -0.3
2,762,103 - +1.0
2,762,117 + -0.2
2,762,117 + +0.1
2,762,117 + -0.0
2,762,117 + +1.1
2,762,118 - +1.2
2,762,118 - +0.1
2,762,118 - +0.7
2,762,236 - Rru_A2370 0.17 -1.3
2,762,498 + Rru_A2370 0.63 -1.6
2,762,499 - Rru_A2370 0.63 -2.4
2,762,526 + Rru_A2370 0.68 -3.0
2,762,741 + +0.0
2,762,741 + -0.6
2,762,787 + +1.8
2,763,102 + Rru_A2371 0.12 +0.1
2,763,102 + Rru_A2371 0.12 +0.0
2,763,103 - Rru_A2371 0.12 +0.5
2,763,279 + Rru_A2371 0.25 -0.8
2,763,279 + Rru_A2371 0.25 -0.9
2,763,279 + Rru_A2371 0.25 +0.5
2,763,280 - Rru_A2371 0.25 -0.4

Or see this region's nucleotide sequence