Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2221

Experiment: Succinic Acid 31.25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2220 and Rru_A2221 are separated by 71 nucleotidesRru_A2221 and Rru_A2222 are separated by 43 nucleotides Rru_A2220: Rru_A2220 - Excinuclease ABC, C subunit (NCBI), at 2,578,520 to 2,580,439 _A2220 Rru_A2221: Rru_A2221 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (NCBI), at 2,580,511 to 2,581,104 _A2221 Rru_A2222: Rru_A2222 - Molybdopterin biosynthesis protein (NCBI), at 2,581,148 to 2,582,434 _A2222 Position (kb) 2580 2581 2582Strain fitness (log2 ratio) -2 -1 0 1 2at 2579.511 kb on - strand, within Rru_A2220at 2579.511 kb on - strand, within Rru_A2220at 2579.783 kb on + strand, within Rru_A2220at 2579.784 kb on - strand, within Rru_A2220at 2579.784 kb on - strand, within Rru_A2220at 2579.784 kb on - strand, within Rru_A2220at 2579.784 kb on - strand, within Rru_A2220at 2579.784 kb on - strand, within Rru_A2220at 2579.797 kb on + strand, within Rru_A2220at 2579.798 kb on - strand, within Rru_A2220at 2579.798 kb on - strand, within Rru_A2220at 2579.798 kb on - strand, within Rru_A2220at 2579.798 kb on - strand, within Rru_A2220at 2579.798 kb on - strand, within Rru_A2220at 2579.913 kb on - strand, within Rru_A2220at 2579.913 kb on - strand, within Rru_A2220at 2579.913 kb on - strand, within Rru_A2220at 2580.278 kb on - strandat 2580.413 kb on + strandat 2580.438 kb on - strandat 2580.485 kb on + strandat 2580.485 kb on + strandat 2580.486 kb on - strandat 2581.089 kb on + strandat 2581.092 kb on + strandat 2581.092 kb on + strandat 2581.093 kb on - strandat 2581.361 kb on - strand, within Rru_A2222at 2581.361 kb on - strand, within Rru_A2222at 2581.361 kb on - strand, within Rru_A2222at 2581.379 kb on + strand, within Rru_A2222at 2581.571 kb on + strand, within Rru_A2222at 2581.571 kb on + strand, within Rru_A2222at 2581.572 kb on - strand, within Rru_A2222at 2581.808 kb on + strand, within Rru_A2222at 2581.809 kb on - strand, within Rru_A2222at 2581.809 kb on - strand, within Rru_A2222at 2581.809 kb on - strand, within Rru_A2222at 2581.809 kb on - strand, within Rru_A2222at 2581.809 kb on - strand, within Rru_A2222at 2581.810 kb on + strand, within Rru_A2222at 2581.810 kb on + strand, within Rru_A2222at 2581.811 kb on - strand, within Rru_A2222at 2581.811 kb on - strand, within Rru_A2222at 2581.811 kb on - strand, within Rru_A2222

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
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2,579,511 - Rru_A2220 0.52 -1.9
2,579,511 - Rru_A2220 0.52 -0.6
2,579,783 + Rru_A2220 0.66 -0.0
2,579,784 - Rru_A2220 0.66 -0.2
2,579,784 - Rru_A2220 0.66 -0.9
2,579,784 - Rru_A2220 0.66 -0.6
2,579,784 - Rru_A2220 0.66 +0.3
2,579,784 - Rru_A2220 0.66 +0.5
2,579,797 + Rru_A2220 0.67 -0.3
2,579,798 - Rru_A2220 0.67 -1.3
2,579,798 - Rru_A2220 0.67 +0.1
2,579,798 - Rru_A2220 0.67 +0.6
2,579,798 - Rru_A2220 0.67 -0.4
2,579,798 - Rru_A2220 0.67 +0.3
2,579,913 - Rru_A2220 0.73 -0.1
2,579,913 - Rru_A2220 0.73 -0.6
2,579,913 - Rru_A2220 0.73 -1.6
2,580,278 - -0.1
2,580,413 + -1.3
2,580,438 - +2.2
2,580,485 + +0.4
2,580,485 + -0.1
2,580,486 - -0.0
2,581,089 + -1.0
2,581,092 + -0.4
2,581,092 + -1.9
2,581,093 - -1.8
2,581,361 - Rru_A2222 0.17 -0.8
2,581,361 - Rru_A2222 0.17 -0.4
2,581,361 - Rru_A2222 0.17 -0.4
2,581,379 + Rru_A2222 0.18 +0.2
2,581,571 + Rru_A2222 0.33 -0.3
2,581,571 + Rru_A2222 0.33 -0.3
2,581,572 - Rru_A2222 0.33 +0.5
2,581,808 + Rru_A2222 0.51 -0.4
2,581,809 - Rru_A2222 0.51 +0.9
2,581,809 - Rru_A2222 0.51 -0.3
2,581,809 - Rru_A2222 0.51 +0.1
2,581,809 - Rru_A2222 0.51 -0.0
2,581,809 - Rru_A2222 0.51 -0.6
2,581,810 + Rru_A2222 0.51 -0.4
2,581,810 + Rru_A2222 0.51 -2.2
2,581,811 - Rru_A2222 0.52 -0.2
2,581,811 - Rru_A2222 0.52 +0.2
2,581,811 - Rru_A2222 0.52 -2.1

Or see this region's nucleotide sequence