Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2210

Experiment: Succinic Acid 31.25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2209 and Rru_A2210 are separated by 153 nucleotidesRru_A2210 and Rru_A2211 are separated by 203 nucleotides Rru_A2209: Rru_A2209 - AsmA (NCBI), at 2,564,644 to 2,567,877 _A2209 Rru_A2210: Rru_A2210 - Phosphoglycerate/bisphosphoglycerate mutase (NCBI), at 2,568,031 to 2,568,606 _A2210 Rru_A2211: Rru_A2211 - Porin, Gram-negative type (NCBI), at 2,568,810 to 2,569,898 _A2211 Position (kb) 2568 2569Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2567.200 kb on + strand, within Rru_A2209at 2567.200 kb on + strand, within Rru_A2209at 2567.201 kb on - strand, within Rru_A2209at 2567.786 kb on + strandat 2567.786 kb on + strandat 2567.787 kb on - strandat 2567.787 kb on - strandat 2567.867 kb on - strandat 2567.891 kb on + strandat 2567.892 kb on - strandat 2567.892 kb on - strandat 2567.898 kb on - strandat 2567.925 kb on + strandat 2567.932 kb on + strandat 2567.932 kb on + strandat 2567.932 kb on + strandat 2567.932 kb on + strandat 2567.932 kb on + strandat 2567.933 kb on - strandat 2568.008 kb on + strandat 2568.009 kb on - strandat 2568.009 kb on - strandat 2568.009 kb on - strandat 2568.009 kb on - strandat 2568.021 kb on + strandat 2568.022 kb on - strandat 2568.282 kb on + strand, within Rru_A2210at 2568.563 kb on + strandat 2568.564 kb on - strandat 2568.581 kb on - strandat 2568.630 kb on + strandat 2568.631 kb on - strandat 2568.698 kb on - strandat 2568.751 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
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2,567,200 + Rru_A2209 0.79 -2.5
2,567,200 + Rru_A2209 0.79 -0.9
2,567,201 - Rru_A2209 0.79 -1.5
2,567,786 + +1.9
2,567,786 + -0.4
2,567,787 - -1.1
2,567,787 - +0.0
2,567,867 - -0.2
2,567,891 + -0.3
2,567,892 - -1.0
2,567,892 - -1.4
2,567,898 - +0.7
2,567,925 + -0.4
2,567,932 + +1.5
2,567,932 + +2.1
2,567,932 + +0.6
2,567,932 + -0.3
2,567,932 + -0.6
2,567,933 - -0.2
2,568,008 + -0.5
2,568,009 - +0.3
2,568,009 - +0.4
2,568,009 - -0.0
2,568,009 - +0.8
2,568,021 + -0.3
2,568,022 - -0.3
2,568,282 + Rru_A2210 0.44 +0.1
2,568,563 + -3.6
2,568,564 - -0.0
2,568,581 - +0.3
2,568,630 + +0.4
2,568,631 - -0.3
2,568,698 - -0.4
2,568,751 + -0.3

Or see this region's nucleotide sequence