Experiment: Succinic Acid 31.25 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A1413 and Rru_A1414 are separated by 384 nucleotides Rru_A1414 and Rru_A1415 are separated by 99 nucleotides Rru_A1415 and Rru_A1416 overlap by 4 nucleotides Rru_A1416 and Rru_A1417 are separated by 123 nucleotides
Rru_A1413: Rru_A1413 - Protein of unknown function DUF224, cysteine-rich region (NCBI), at 1,670,892 to 1,671,641
_A1413
Rru_A1414: Rru_A1414 - regulatory protein GntR (NCBI), at 1,672,026 to 1,672,802
_A1414
Rru_A1415: Rru_A1415 - Protein of unknown function DUF132 (NCBI), at 1,672,902 to 1,673,366
_A1415
Rru_A1416: Rru_A1416 - hypothetical protein (NCBI), at 1,673,363 to 1,673,614
_A1416
Rru_A1417: Rru_A1417 - thioredoxin-disulfide reductase (NCBI), at 1,673,738 to 1,675,318
_A1417
Position (kb)
1672
1673 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1671.292 kb on + strand, within Rru_A1413 at 1671.293 kb on - strand, within Rru_A1413 at 1671.293 kb on - strand, within Rru_A1413 at 1671.355 kb on + strand, within Rru_A1413 at 1671.355 kb on + strand, within Rru_A1413 at 1671.754 kb on - strand at 1671.874 kb on + strand at 1671.874 kb on + strand at 1671.874 kb on + strand at 1671.875 kb on - strand at 1671.912 kb on + strand at 1671.981 kb on - strand at 1671.985 kb on + strand at 1671.985 kb on + strand at 1671.986 kb on - strand at 1672.320 kb on + strand, within Rru_A1414 at 1672.321 kb on - strand, within Rru_A1414 at 1672.495 kb on - strand, within Rru_A1414 at 1672.495 kb on - strand, within Rru_A1414 at 1672.508 kb on + strand, within Rru_A1414 at 1672.508 kb on + strand, within Rru_A1414 at 1672.509 kb on - strand, within Rru_A1414 at 1672.515 kb on - strand, within Rru_A1414 at 1672.570 kb on - strand, within Rru_A1414 at 1672.851 kb on + strand at 1672.851 kb on + strand at 1672.857 kb on + strand at 1672.857 kb on + strand at 1672.857 kb on + strand at 1672.861 kb on + strand at 1673.036 kb on + strand, within Rru_A1415 at 1673.037 kb on - strand, within Rru_A1415 at 1673.037 kb on - strand, within Rru_A1415 at 1673.071 kb on - strand, within Rru_A1415 at 1673.117 kb on - strand, within Rru_A1415 at 1673.117 kb on - strand, within Rru_A1415 at 1673.273 kb on + strand, within Rru_A1415 at 1673.273 kb on + strand, within Rru_A1415 at 1673.274 kb on - strand, within Rru_A1415 at 1673.323 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic remove 1,671,292 + Rru_A1413 0.53 -0.9 1,671,293 - Rru_A1413 0.53 +1.3 1,671,293 - Rru_A1413 0.53 -0.5 1,671,355 + Rru_A1413 0.62 -0.0 1,671,355 + Rru_A1413 0.62 -1.2 1,671,754 - +1.8 1,671,874 + +0.5 1,671,874 + +1.0 1,671,874 + +0.7 1,671,875 - +0.1 1,671,912 + +0.5 1,671,981 - +1.1 1,671,985 + -0.6 1,671,985 + -0.6 1,671,986 - -0.8 1,672,320 + Rru_A1414 0.38 -1.7 1,672,321 - Rru_A1414 0.38 +0.4 1,672,495 - Rru_A1414 0.60 +0.8 1,672,495 - Rru_A1414 0.60 +1.1 1,672,508 + Rru_A1414 0.62 -1.2 1,672,508 + Rru_A1414 0.62 +1.4 1,672,509 - Rru_A1414 0.62 +0.7 1,672,515 - Rru_A1414 0.63 +0.0 1,672,570 - Rru_A1414 0.70 +0.4 1,672,851 + -1.0 1,672,851 + +0.2 1,672,857 + -1.0 1,672,857 + +0.1 1,672,857 + +0.3 1,672,861 + +0.3 1,673,036 + Rru_A1415 0.29 +0.1 1,673,037 - Rru_A1415 0.29 +1.0 1,673,037 - Rru_A1415 0.29 +0.2 1,673,071 - Rru_A1415 0.36 -2.8 1,673,117 - Rru_A1415 0.46 +0.2 1,673,117 - Rru_A1415 0.46 -0.8 1,673,273 + Rru_A1415 0.80 -0.6 1,673,273 + Rru_A1415 0.80 +0.6 1,673,274 - Rru_A1415 0.80 +0.2 1,673,323 + +0.2
Or see this region's nucleotide sequence