Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1414

Experiment: Succinic Acid 31.25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1413 and Rru_A1414 are separated by 384 nucleotidesRru_A1414 and Rru_A1415 are separated by 99 nucleotidesRru_A1415 and Rru_A1416 overlap by 4 nucleotidesRru_A1416 and Rru_A1417 are separated by 123 nucleotides Rru_A1413: Rru_A1413 - Protein of unknown function DUF224, cysteine-rich region (NCBI), at 1,670,892 to 1,671,641 _A1413 Rru_A1414: Rru_A1414 - regulatory protein GntR (NCBI), at 1,672,026 to 1,672,802 _A1414 Rru_A1415: Rru_A1415 - Protein of unknown function DUF132 (NCBI), at 1,672,902 to 1,673,366 _A1415 Rru_A1416: Rru_A1416 - hypothetical protein (NCBI), at 1,673,363 to 1,673,614 _A1416 Rru_A1417: Rru_A1417 - thioredoxin-disulfide reductase (NCBI), at 1,673,738 to 1,675,318 _A1417 Position (kb) 1672 1673Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1671.292 kb on + strand, within Rru_A1413at 1671.293 kb on - strand, within Rru_A1413at 1671.293 kb on - strand, within Rru_A1413at 1671.355 kb on + strand, within Rru_A1413at 1671.355 kb on + strand, within Rru_A1413at 1671.754 kb on - strandat 1671.874 kb on + strandat 1671.874 kb on + strandat 1671.874 kb on + strandat 1671.875 kb on - strandat 1671.912 kb on + strandat 1671.981 kb on - strandat 1671.985 kb on + strandat 1671.985 kb on + strandat 1671.986 kb on - strandat 1672.320 kb on + strand, within Rru_A1414at 1672.321 kb on - strand, within Rru_A1414at 1672.495 kb on - strand, within Rru_A1414at 1672.495 kb on - strand, within Rru_A1414at 1672.508 kb on + strand, within Rru_A1414at 1672.508 kb on + strand, within Rru_A1414at 1672.509 kb on - strand, within Rru_A1414at 1672.515 kb on - strand, within Rru_A1414at 1672.570 kb on - strand, within Rru_A1414at 1672.851 kb on + strandat 1672.851 kb on + strandat 1672.857 kb on + strandat 1672.857 kb on + strandat 1672.857 kb on + strandat 1672.861 kb on + strandat 1673.036 kb on + strand, within Rru_A1415at 1673.037 kb on - strand, within Rru_A1415at 1673.037 kb on - strand, within Rru_A1415at 1673.071 kb on - strand, within Rru_A1415at 1673.117 kb on - strand, within Rru_A1415at 1673.117 kb on - strand, within Rru_A1415at 1673.273 kb on + strand, within Rru_A1415at 1673.273 kb on + strand, within Rru_A1415at 1673.274 kb on - strand, within Rru_A1415at 1673.323 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
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1,671,292 + Rru_A1413 0.53 -0.9
1,671,293 - Rru_A1413 0.53 +1.3
1,671,293 - Rru_A1413 0.53 -0.5
1,671,355 + Rru_A1413 0.62 -0.0
1,671,355 + Rru_A1413 0.62 -1.2
1,671,754 - +1.8
1,671,874 + +0.5
1,671,874 + +1.0
1,671,874 + +0.7
1,671,875 - +0.1
1,671,912 + +0.5
1,671,981 - +1.1
1,671,985 + -0.6
1,671,985 + -0.6
1,671,986 - -0.8
1,672,320 + Rru_A1414 0.38 -1.7
1,672,321 - Rru_A1414 0.38 +0.4
1,672,495 - Rru_A1414 0.60 +0.8
1,672,495 - Rru_A1414 0.60 +1.1
1,672,508 + Rru_A1414 0.62 -1.2
1,672,508 + Rru_A1414 0.62 +1.4
1,672,509 - Rru_A1414 0.62 +0.7
1,672,515 - Rru_A1414 0.63 +0.0
1,672,570 - Rru_A1414 0.70 +0.4
1,672,851 + -1.0
1,672,851 + +0.2
1,672,857 + -1.0
1,672,857 + +0.1
1,672,857 + +0.3
1,672,861 + +0.3
1,673,036 + Rru_A1415 0.29 +0.1
1,673,037 - Rru_A1415 0.29 +1.0
1,673,037 - Rru_A1415 0.29 +0.2
1,673,071 - Rru_A1415 0.36 -2.8
1,673,117 - Rru_A1415 0.46 +0.2
1,673,117 - Rru_A1415 0.46 -0.8
1,673,273 + Rru_A1415 0.80 -0.6
1,673,273 + Rru_A1415 0.80 +0.6
1,673,274 - Rru_A1415 0.80 +0.2
1,673,323 + +0.2

Or see this region's nucleotide sequence