Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0874

Experiment: Succinic Acid 31.25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0873 and Rru_A0874 are separated by 38 nucleotidesRru_A0874 and Rru_A0875 are separated by 82 nucleotidesRru_A0875 and Rru_A0876 are separated by 61 nucleotides Rru_A0873: Rru_A0873 - hypothetical protein (NCBI), at 1,043,594 to 1,045,147 _A0873 Rru_A0874: Rru_A0874 - hypothetical protein (NCBI), at 1,045,186 to 1,045,488 _A0874 Rru_A0875: Rru_A0875 - hypothetical protein (NCBI), at 1,045,571 to 1,045,894 _A0875 Rru_A0876: Rru_A0876 - hypothetical protein (NCBI), at 1,045,956 to 1,046,273 _A0876 Position (kb) 1045 1046Strain fitness (log2 ratio) -3 -2 -1 0 1at 1044.190 kb on + strand, within Rru_A0873at 1044.190 kb on + strand, within Rru_A0873at 1044.191 kb on - strand, within Rru_A0873at 1044.192 kb on + strand, within Rru_A0873at 1044.249 kb on + strand, within Rru_A0873at 1044.249 kb on + strand, within Rru_A0873at 1044.250 kb on - strand, within Rru_A0873at 1044.250 kb on - strand, within Rru_A0873at 1044.316 kb on - strand, within Rru_A0873at 1044.316 kb on - strand, within Rru_A0873at 1044.483 kb on + strand, within Rru_A0873at 1044.484 kb on - strand, within Rru_A0873at 1044.484 kb on - strand, within Rru_A0873at 1044.484 kb on - strand, within Rru_A0873at 1044.484 kb on - strand, within Rru_A0873at 1044.764 kb on - strand, within Rru_A0873at 1044.998 kb on - strandat 1045.187 kb on + strandat 1045.199 kb on + strandat 1045.200 kb on - strandat 1045.301 kb on - strand, within Rru_A0874at 1045.361 kb on + strand, within Rru_A0874at 1045.361 kb on + strand, within Rru_A0874at 1045.361 kb on + strand, within Rru_A0874at 1045.362 kb on - strand, within Rru_A0874at 1045.444 kb on + strand, within Rru_A0874at 1045.473 kb on + strandat 1045.474 kb on - strandat 1045.508 kb on + strandat 1045.539 kb on + strandat 1045.539 kb on + strandat 1045.539 kb on + strandat 1045.540 kb on - strandat 1045.555 kb on - strandat 1045.555 kb on - strandat 1045.555 kb on - strandat 1046.013 kb on - strand, within Rru_A0876at 1046.280 kb on + strandat 1046.390 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
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1,044,190 + Rru_A0873 0.38 -1.1
1,044,190 + Rru_A0873 0.38 +0.5
1,044,191 - Rru_A0873 0.38 +0.5
1,044,192 + Rru_A0873 0.38 -0.4
1,044,249 + Rru_A0873 0.42 -0.3
1,044,249 + Rru_A0873 0.42 +1.5
1,044,250 - Rru_A0873 0.42 -3.2
1,044,250 - Rru_A0873 0.42 +1.7
1,044,316 - Rru_A0873 0.46 +0.3
1,044,316 - Rru_A0873 0.46 -0.5
1,044,483 + Rru_A0873 0.57 +0.8
1,044,484 - Rru_A0873 0.57 -1.2
1,044,484 - Rru_A0873 0.57 +0.7
1,044,484 - Rru_A0873 0.57 +0.6
1,044,484 - Rru_A0873 0.57 +0.3
1,044,764 - Rru_A0873 0.75 -2.6
1,044,998 - -0.3
1,045,187 + -0.4
1,045,199 + +0.0
1,045,200 - -0.6
1,045,301 - Rru_A0874 0.38 -1.7
1,045,361 + Rru_A0874 0.58 -0.6
1,045,361 + Rru_A0874 0.58 -0.2
1,045,361 + Rru_A0874 0.58 -0.7
1,045,362 - Rru_A0874 0.58 -0.5
1,045,444 + Rru_A0874 0.85 -0.6
1,045,473 + +0.5
1,045,474 - -0.2
1,045,508 + +0.0
1,045,539 + +0.5
1,045,539 + -0.2
1,045,539 + +0.0
1,045,540 - +0.0
1,045,555 - -0.1
1,045,555 - -0.5
1,045,555 - -0.1
1,046,013 - Rru_A0876 0.18 -0.6
1,046,280 + -0.6
1,046,390 + -0.3

Or see this region's nucleotide sequence