Experiment: Succinic Acid 31.25 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0873 and Rru_A0874 are separated by 38 nucleotides Rru_A0874 and Rru_A0875 are separated by 82 nucleotides Rru_A0875 and Rru_A0876 are separated by 61 nucleotides
Rru_A0873: Rru_A0873 - hypothetical protein (NCBI), at 1,043,594 to 1,045,147
_A0873
Rru_A0874: Rru_A0874 - hypothetical protein (NCBI), at 1,045,186 to 1,045,488
_A0874
Rru_A0875: Rru_A0875 - hypothetical protein (NCBI), at 1,045,571 to 1,045,894
_A0875
Rru_A0876: Rru_A0876 - hypothetical protein (NCBI), at 1,045,956 to 1,046,273
_A0876
Position (kb)
1045
1046 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1044.190 kb on + strand, within Rru_A0873 at 1044.190 kb on + strand, within Rru_A0873 at 1044.191 kb on - strand, within Rru_A0873 at 1044.192 kb on + strand, within Rru_A0873 at 1044.249 kb on + strand, within Rru_A0873 at 1044.249 kb on + strand, within Rru_A0873 at 1044.250 kb on - strand, within Rru_A0873 at 1044.250 kb on - strand, within Rru_A0873 at 1044.316 kb on - strand, within Rru_A0873 at 1044.316 kb on - strand, within Rru_A0873 at 1044.483 kb on + strand, within Rru_A0873 at 1044.484 kb on - strand, within Rru_A0873 at 1044.484 kb on - strand, within Rru_A0873 at 1044.484 kb on - strand, within Rru_A0873 at 1044.484 kb on - strand, within Rru_A0873 at 1044.764 kb on - strand, within Rru_A0873 at 1044.998 kb on - strand at 1045.187 kb on + strand at 1045.199 kb on + strand at 1045.200 kb on - strand at 1045.301 kb on - strand, within Rru_A0874 at 1045.361 kb on + strand, within Rru_A0874 at 1045.361 kb on + strand, within Rru_A0874 at 1045.361 kb on + strand, within Rru_A0874 at 1045.362 kb on - strand, within Rru_A0874 at 1045.444 kb on + strand, within Rru_A0874 at 1045.473 kb on + strand at 1045.474 kb on - strand at 1045.508 kb on + strand at 1045.539 kb on + strand at 1045.539 kb on + strand at 1045.539 kb on + strand at 1045.540 kb on - strand at 1045.555 kb on - strand at 1045.555 kb on - strand at 1045.555 kb on - strand at 1046.013 kb on - strand, within Rru_A0876 at 1046.280 kb on + strand at 1046.390 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic remove 1,044,190 + Rru_A0873 0.38 -1.1 1,044,190 + Rru_A0873 0.38 +0.5 1,044,191 - Rru_A0873 0.38 +0.5 1,044,192 + Rru_A0873 0.38 -0.4 1,044,249 + Rru_A0873 0.42 -0.3 1,044,249 + Rru_A0873 0.42 +1.5 1,044,250 - Rru_A0873 0.42 -3.2 1,044,250 - Rru_A0873 0.42 +1.7 1,044,316 - Rru_A0873 0.46 +0.3 1,044,316 - Rru_A0873 0.46 -0.5 1,044,483 + Rru_A0873 0.57 +0.8 1,044,484 - Rru_A0873 0.57 -1.2 1,044,484 - Rru_A0873 0.57 +0.7 1,044,484 - Rru_A0873 0.57 +0.6 1,044,484 - Rru_A0873 0.57 +0.3 1,044,764 - Rru_A0873 0.75 -2.6 1,044,998 - -0.3 1,045,187 + -0.4 1,045,199 + +0.0 1,045,200 - -0.6 1,045,301 - Rru_A0874 0.38 -1.7 1,045,361 + Rru_A0874 0.58 -0.6 1,045,361 + Rru_A0874 0.58 -0.2 1,045,361 + Rru_A0874 0.58 -0.7 1,045,362 - Rru_A0874 0.58 -0.5 1,045,444 + Rru_A0874 0.85 -0.6 1,045,473 + +0.5 1,045,474 - -0.2 1,045,508 + +0.0 1,045,539 + +0.5 1,045,539 + -0.2 1,045,539 + +0.0 1,045,540 - +0.0 1,045,555 - -0.1 1,045,555 - -0.5 1,045,555 - -0.1 1,046,013 - Rru_A0876 0.18 -0.6 1,046,280 + -0.6 1,046,390 + -0.3
Or see this region's nucleotide sequence