Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0834

Experiment: Succinic Acid 31.25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0833 and Rru_A0834 are separated by 15 nucleotidesRru_A0834 and Rru_A0835 are separated by 177 nucleotidesRru_A0835 and 11438709 overlap by 276 nucleotides11438709 and 11581072 overlap by 32 nucleotides11581072 and 11723464 overlap by 32 nucleotides11723464 and 11438710 are separated by 0 nucleotides11438710 and 11581073 overlap by 34 nucleotides11581073 and 11723465 overlap by 34 nucleotides11723465 and 11438711 are separated by 0 nucleotides11438711 and 11581074 overlap by 32 nucleotides11581074 and 11723466 overlap by 32 nucleotides11723466 and 11438712 are separated by 0 nucleotides11438712 and 11581075 overlap by 32 nucleotides11581075 and 11723467 overlap by 32 nucleotides11723467 and 11438713 are separated by 0 nucleotides11438713 and 11581076 overlap by 32 nucleotides11581076 and 11723468 overlap by 32 nucleotides11723468 and 11438714 are separated by 0 nucleotides11438714 and 11581077 overlap by 34 nucleotides11581077 and 11723469 overlap by 34 nucleotides11723469 and 11438715 are separated by 0 nucleotides11438715 and 11581078 overlap by 32 nucleotides11581078 and 11723470 overlap by 32 nucleotides11723470 and 11438716 are separated by 0 nucleotides11438716 and 11581079 overlap by 34 nucleotides11581079 and 11723471 overlap by 34 nucleotides11723471 and 11438717 are separated by 0 nucleotides11438717 and 11581080 overlap by 32 nucleotides11581080 and 11723472 overlap by 32 nucleotides11723472 and 11438718 are separated by 0 nucleotides11438718 and 11581081 overlap by 35 nucleotides11581081 and 11723473 overlap by 35 nucleotides11723473 and 11438719 are separated by 0 nucleotides11438719 and 11581082 overlap by 32 nucleotides11581082 and 11723474 overlap by 32 nucleotides11723474 and 11438720 are separated by 0 nucleotides11438720 and 11581083 overlap by 35 nucleotides11581083 and 11723475 overlap by 35 nucleotides11723475 and 11438721 are separated by 0 nucleotides11438721 and 11581084 overlap by 32 nucleotides11581084 and 11723476 overlap by 32 nucleotides11723476 and 11438722 are separated by 0 nucleotides11438722 and 11581085 overlap by 34 nucleotides11581085 and 11723477 overlap by 34 nucleotides11723477 and 11438723 are separated by 0 nucleotides11438723 and 11581086 overlap by 32 nucleotides11581086 and 11723478 overlap by 32 nucleotides11723478 and 11438724 are separated by 0 nucleotides11438724 and 11581087 overlap by 33 nucleotides11581087 and 11723479 overlap by 33 nucleotides11723479 and 11438725 are separated by 0 nucleotides11438725 and 11581088 overlap by 32 nucleotides11581088 and 11723480 overlap by 32 nucleotides11723480 and 11438726 are separated by 0 nucleotides11438726 and 11581089 overlap by 35 nucleotides11581089 and 11723481 overlap by 35 nucleotides11723481 and 11438727 are separated by 0 nucleotides11438727 and 11581090 overlap by 32 nucleotides11581090 and 11723482 overlap by 32 nucleotides11723482 and 11438728 are separated by 0 nucleotides11438728 and 11581091 overlap by 32 nucleotides11581091 and 11723483 overlap by 32 nucleotides11723483 and 11438729 are separated by 0 nucleotides11438729 and 11581092 overlap by 32 nucleotides11581092 and 11723484 overlap by 32 nucleotides11723484 and 11438730 are separated by 0 nucleotides11438730 and 11581093 overlap by 33 nucleotides11581093 and 11723485 overlap by 33 nucleotides11723485 and 11438731 are separated by 0 nucleotides11438731 and 11581094 overlap by 32 nucleotides11581094 and 11723486 overlap by 32 nucleotides11723486 and 11438732 are separated by 0 nucleotides11438732 and 11581095 overlap by 35 nucleotides11581095 and 11723487 overlap by 35 nucleotides11723487 and 11438733 are separated by 0 nucleotides Rru_A0833: Rru_A0833 - Protein of unknown function DUF48 (NCBI), at 987,840 to 988,874 _A0833 Rru_A0834: Rru_A0834 - Protein of unknown function DUF196 (NCBI), at 988,890 to 989,177 _A0834 Rru_A0835: Rru_A0835 - hypothetical protein (NCBI), at 989,355 to 989,657 _A0835 11438709 - no description, at 989,382 to 989,413 11438709 11581072 - no description, at 989,382 to 989,413 11581072 11723464 - no description, at 989,382 to 989,413 11723464 11438710 - no description, at 989,414 to 989,447 11438710 11581073 - no description, at 989,414 to 989,447 11581073 11723465 - no description, at 989,414 to 989,447 11723465 11438711 - no description, at 989,448 to 989,479 11438711 11581074 - no description, at 989,448 to 989,479 11581074 11723466 - no description, at 989,448 to 989,479 11723466 11438712 - no description, at 989,480 to 989,511 11438712 11581075 - no description, at 989,480 to 989,511 11581075 11723467 - no description, at 989,480 to 989,511 11723467 11438713 - no description, at 989,512 to 989,543 11438713 11581076 - no description, at 989,512 to 989,543 11581076 11723468 - no description, at 989,512 to 989,543 11723468 11438714 - no description, at 989,544 to 989,577 11438714 11581077 - no description, at 989,544 to 989,577 11581077 11723469 - no description, at 989,544 to 989,577 11723469 11438715 - no description, at 989,578 to 989,609 11438715 11581078 - no description, at 989,578 to 989,609 11581078 11723470 - no description, at 989,578 to 989,609 11723470 11438716 - no description, at 989,610 to 989,643 11438716 11581079 - no description, at 989,610 to 989,643 11581079 11723471 - no description, at 989,610 to 989,643 11723471 11438717 - no description, at 989,644 to 989,675 11438717 11581080 - no description, at 989,644 to 989,675 11581080 11723472 - no description, at 989,644 to 989,675 11723472 11438718 - no description, at 989,676 to 989,710 11438718 11581081 - no description, at 989,676 to 989,710 11581081 11723473 - no description, at 989,676 to 989,710 11723473 11438719 - no description, at 989,711 to 989,742 11438719 11581082 - no description, at 989,711 to 989,742 11581082 11723474 - no description, at 989,711 to 989,742 11723474 11438720 - no description, at 989,743 to 989,777 11438720 11581083 - no description, at 989,743 to 989,777 11581083 11723475 - no description, at 989,743 to 989,777 11723475 11438721 - no description, at 989,778 to 989,809 11438721 11581084 - no description, at 989,778 to 989,809 11581084 11723476 - no description, at 989,778 to 989,809 11723476 11438722 - no description, at 989,810 to 989,843 11438722 11581085 - no description, at 989,810 to 989,843 11581085 11723477 - no description, at 989,810 to 989,843 11723477 11438723 - no description, at 989,844 to 989,875 11438723 11581086 - no description, at 989,844 to 989,875 11581086 11723478 - no description, at 989,844 to 989,875 11723478 11438724 - no description, at 989,876 to 989,908 11438724 11581087 - no description, at 989,876 to 989,908 11581087 11723479 - no description, at 989,876 to 989,908 11723479 11438725 - no description, at 989,909 to 989,940 11438725 11581088 - no description, at 989,909 to 989,940 11581088 11723480 - no description, at 989,909 to 989,940 11723480 11438726 - no description, at 989,941 to 989,975 11438726 11581089 - no description, at 989,941 to 989,975 11581089 11723481 - no description, at 989,941 to 989,975 11723481 11438727 - no description, at 989,976 to 990,007 11438727 11581090 - no description, at 989,976 to 990,007 11581090 11723482 - no description, at 989,976 to 990,007 11723482 11438728 - no description, at 990,008 to 990,039 11438728 11581091 - no description, at 990,008 to 990,039 11581091 11723483 - no description, at 990,008 to 990,039 11723483 11438729 - no description, at 990,040 to 990,071 11438729 11581092 - no description, at 990,040 to 990,071 11581092 11723484 - no description, at 990,040 to 990,071 11723484 11438730 - no description, at 990,072 to 990,104 11438730 11581093 - no description, at 990,072 to 990,104 11581093 11723485 - no description, at 990,072 to 990,104 11723485 11438731 - no description, at 990,105 to 990,136 11438731 11581094 - no description, at 990,105 to 990,136 11581094 11723486 - no description, at 990,105 to 990,136 11723486 11438732 - no description, at 990,137 to 990,171 11438732 11581095 - no description, at 990,137 to 990,171 11581095 11723487 - no description, at 990,137 to 990,171 11723487 11438733 - no description, at 990,172 to 990,203 11438733 11581096 - no description, at 990,172 to 990,203 11581096 11723488 - no description, at 990,172 to 990,203 11723488 Position (kb) 988 989 990Strain fitness (log2 ratio) -3 -2 -1 0 1at 987.956 kb on + strand, within Rru_A0833at 987.956 kb on + strand, within Rru_A0833at 987.957 kb on - strand, within Rru_A0833at 987.957 kb on - strand, within Rru_A0833at 987.957 kb on - strand, within Rru_A0833at 987.957 kb on - strand, within Rru_A0833at 987.957 kb on - strand, within Rru_A0833at 987.990 kb on + strand, within Rru_A0833at 987.990 kb on + strand, within Rru_A0833at 987.991 kb on - strand, within Rru_A0833at 987.991 kb on - strand, within Rru_A0833at 987.991 kb on - strand, within Rru_A0833at 988.122 kb on + strand, within Rru_A0833at 988.122 kb on + strand, within Rru_A0833at 988.123 kb on - strand, within Rru_A0833at 988.283 kb on + strand, within Rru_A0833at 988.359 kb on + strand, within Rru_A0833at 988.360 kb on - strand, within Rru_A0833at 988.468 kb on + strand, within Rru_A0833at 988.468 kb on + strand, within Rru_A0833at 988.469 kb on - strand, within Rru_A0833at 988.469 kb on - strand, within Rru_A0833at 988.470 kb on + strand, within Rru_A0833at 988.470 kb on + strand, within Rru_A0833at 988.471 kb on - strand, within Rru_A0833at 988.471 kb on - strand, within Rru_A0833at 988.473 kb on - strand, within Rru_A0833at 988.720 kb on + strand, within Rru_A0833at 988.720 kb on + strand, within Rru_A0833at 988.720 kb on + strand, within Rru_A0833at 988.721 kb on - strand, within Rru_A0833at 988.872 kb on + strandat 988.872 kb on + strandat 988.872 kb on + strandat 988.872 kb on + strandat 988.872 kb on + strandat 988.873 kb on - strandat 988.873 kb on - strandat 988.873 kb on - strandat 988.905 kb on + strandat 988.906 kb on - strandat 988.906 kb on - strandat 988.906 kb on - strandat 988.906 kb on - strandat 988.906 kb on - strandat 988.906 kb on - strandat 989.078 kb on + strand, within Rru_A0834at 989.089 kb on - strand, within Rru_A0834at 989.091 kb on + strand, within Rru_A0834at 989.092 kb on - strand, within Rru_A0834at 989.257 kb on + strandat 989.271 kb on - strandat 989.364 kb on + strandat 989.364 kb on + strandat 989.364 kb on + strandat 989.364 kb on + strandat 989.365 kb on - strandat 989.365 kb on - strandat 989.365 kb on - strandat 989.365 kb on - strandat 989.365 kb on - strandat 989.418 kb on - strandat 989.418 kb on - strandat 989.418 kb on - strandat 989.418 kb on - strandat 989.421 kb on + strandat 989.421 kb on + strandat 989.421 kb on + strandat 989.422 kb on - strandat 989.422 kb on - strandat 989.432 kb on + strandat 989.433 kb on - strandat 989.441 kb on + strandat 989.442 kb on - strandat 989.442 kb on - strandat 989.442 kb on - strandat 989.745 kb on + strandat 989.745 kb on + strandat 989.745 kb on + strandat 989.816 kb on + strandat 989.942 kb on + strandat 989.942 kb on + strandat 989.942 kb on + strandat 989.942 kb on + strandat 989.942 kb on + strandat 989.942 kb on + strandat 989.942 kb on + strandat 989.942 kb on + strandat 989.942 kb on + strandat 989.942 kb on + strandat 989.942 kb on + strandat 989.943 kb on - strandat 989.943 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
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987,956 + Rru_A0833 0.11 +0.9
987,956 + Rru_A0833 0.11 +0.3
987,957 - Rru_A0833 0.11 -0.1
987,957 - Rru_A0833 0.11 -1.0
987,957 - Rru_A0833 0.11 -0.6
987,957 - Rru_A0833 0.11 +0.4
987,957 - Rru_A0833 0.11 +0.1
987,990 + Rru_A0833 0.14 +0.3
987,990 + Rru_A0833 0.14 -0.1
987,991 - Rru_A0833 0.15 +0.6
987,991 - Rru_A0833 0.15 -0.1
987,991 - Rru_A0833 0.15 -0.3
988,122 + Rru_A0833 0.27 -0.2
988,122 + Rru_A0833 0.27 +0.3
988,123 - Rru_A0833 0.27 -1.0
988,283 + Rru_A0833 0.43 +0.3
988,359 + Rru_A0833 0.50 +1.4
988,360 - Rru_A0833 0.50 -1.1
988,468 + Rru_A0833 0.61 -0.4
988,468 + Rru_A0833 0.61 +0.7
988,469 - Rru_A0833 0.61 +0.1
988,469 - Rru_A0833 0.61 -2.0
988,470 + Rru_A0833 0.61 +0.4
988,470 + Rru_A0833 0.61 +0.2
988,471 - Rru_A0833 0.61 +0.4
988,471 - Rru_A0833 0.61 +0.2
988,473 - Rru_A0833 0.61 +1.4
988,720 + Rru_A0833 0.85 -0.4
988,720 + Rru_A0833 0.85 +0.1
988,720 + Rru_A0833 0.85 -0.0
988,721 - Rru_A0833 0.85 -0.8
988,872 + +0.1
988,872 + -1.4
988,872 + +0.4
988,872 + -0.2
988,872 + -1.6
988,873 - +0.5
988,873 - -0.5
988,873 - +0.5
988,905 + -1.1
988,906 - -0.5
988,906 - +0.7
988,906 - +0.2
988,906 - +0.1
988,906 - +0.4
988,906 - -1.1
989,078 + Rru_A0834 0.65 +0.5
989,089 - Rru_A0834 0.69 -0.1
989,091 + Rru_A0834 0.70 +1.0
989,092 - Rru_A0834 0.70 +0.3
989,257 + -0.6
989,271 - -0.5
989,364 + +1.5
989,364 + -1.6
989,364 + -0.2
989,364 + -1.1
989,365 - -0.6
989,365 - -0.4
989,365 - +0.7
989,365 - -0.7
989,365 - +0.7
989,418 - +0.4
989,418 - +0.5
989,418 - -0.4
989,418 - -1.4
989,421 + -0.3
989,421 + +0.3
989,421 + -0.6
989,422 - +0.0
989,422 - +0.8
989,432 + +0.6
989,433 - -0.3
989,441 + -0.1
989,442 - +0.5
989,442 - +0.1
989,442 - +0.3
989,745 + -0.8
989,745 + -0.2
989,745 + -1.2
989,816 + +0.6
989,942 + +0.8
989,942 + +0.0
989,942 + -0.2
989,942 + +0.3
989,942 + +0.1
989,942 + -1.5
989,942 + -2.8
989,942 + +1.1
989,942 + +0.0
989,942 + -0.2
989,942 + +0.1
989,943 - +0.0
989,943 - -0.8

Or see this region's nucleotide sequence