Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0819

Experiment: Succinic Acid 31.25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0817 and Rru_A0818 overlap by 23 nucleotidesRru_A0818 and Rru_A0819 are separated by 662 nucleotidesRru_A0819 and Rru_A0820 are separated by 18 nucleotidesRru_A0820 and Rru_A0821 overlap by 1 nucleotides Rru_A0817: Rru_A0817 - Transposase, mutator type (NCBI), at 973,250 to 973,960 _A0817 Rru_A0818: Rru_A0818 - hypothetical protein (NCBI), at 973,938 to 974,273 _A0818 Rru_A0819: Rru_A0819 - Asparagine synthase (NCBI), at 974,936 to 976,897 _A0819 Rru_A0820: Rru_A0820 - HPr kinase (NCBI), at 976,916 to 977,821 _A0820 Rru_A0821: Rru_A0821 - hypothetical protein (NCBI), at 977,821 to 978,279 _A0821 Position (kb) 974 975 976 977Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 973.958 kb on + strandat 973.959 kb on - strandat 973.959 kb on - strandat 974.155 kb on + strand, within Rru_A0818at 974.155 kb on + strand, within Rru_A0818at 974.155 kb on + strand, within Rru_A0818at 974.156 kb on - strand, within Rru_A0818at 974.156 kb on - strand, within Rru_A0818at 974.156 kb on - strand, within Rru_A0818at 974.156 kb on - strand, within Rru_A0818at 974.528 kb on + strandat 974.529 kb on - strandat 974.529 kb on - strandat 974.529 kb on - strandat 974.529 kb on - strandat 974.529 kb on - strandat 974.529 kb on - strandat 974.529 kb on - strandat 974.533 kb on - strandat 974.533 kb on - strandat 974.659 kb on + strandat 974.659 kb on + strandat 974.659 kb on + strandat 974.660 kb on - strandat 974.674 kb on - strandat 974.714 kb on + strandat 974.714 kb on + strandat 974.714 kb on + strandat 974.714 kb on + strandat 974.715 kb on - strandat 974.878 kb on + strandat 974.878 kb on + strandat 974.879 kb on - strandat 974.879 kb on - strandat 974.879 kb on - strandat 974.980 kb on + strandat 974.980 kb on + strandat 974.980 kb on + strandat 974.981 kb on - strandat 974.981 kb on - strandat 974.981 kb on - strandat 975.023 kb on + strandat 975.024 kb on - strandat 975.148 kb on + strand, within Rru_A0819at 975.149 kb on - strand, within Rru_A0819at 975.149 kb on - strand, within Rru_A0819at 975.264 kb on - strand, within Rru_A0819at 975.365 kb on + strand, within Rru_A0819at 975.365 kb on + strand, within Rru_A0819at 975.365 kb on + strand, within Rru_A0819at 975.366 kb on - strand, within Rru_A0819at 975.366 kb on - strand, within Rru_A0819at 975.488 kb on + strand, within Rru_A0819at 975.488 kb on + strand, within Rru_A0819at 975.488 kb on + strand, within Rru_A0819at 975.489 kb on - strand, within Rru_A0819at 975.489 kb on - strand, within Rru_A0819at 975.489 kb on - strand, within Rru_A0819at 975.489 kb on - strand, within Rru_A0819at 975.489 kb on - strand, within Rru_A0819at 975.489 kb on - strand, within Rru_A0819at 975.489 kb on - strand, within Rru_A0819at 975.560 kb on + strand, within Rru_A0819at 975.560 kb on + strand, within Rru_A0819at 975.560 kb on + strand, within Rru_A0819at 975.560 kb on + strand, within Rru_A0819at 975.560 kb on + strand, within Rru_A0819at 975.560 kb on + strand, within Rru_A0819at 975.560 kb on + strand, within Rru_A0819at 975.560 kb on + strand, within Rru_A0819at 975.560 kb on + strand, within Rru_A0819at 975.561 kb on - strand, within Rru_A0819at 975.599 kb on + strand, within Rru_A0819at 975.600 kb on - strand, within Rru_A0819at 975.674 kb on + strand, within Rru_A0819at 975.675 kb on - strand, within Rru_A0819at 975.675 kb on - strand, within Rru_A0819at 975.675 kb on - strand, within Rru_A0819at 975.675 kb on - strand, within Rru_A0819at 975.675 kb on - strand, within Rru_A0819at 975.676 kb on + strand, within Rru_A0819at 975.852 kb on - strand, within Rru_A0819at 976.006 kb on + strand, within Rru_A0819at 976.006 kb on + strand, within Rru_A0819at 976.007 kb on - strand, within Rru_A0819at 976.007 kb on - strand, within Rru_A0819at 976.007 kb on - strand, within Rru_A0819at 976.235 kb on + strand, within Rru_A0819at 976.235 kb on + strand, within Rru_A0819at 976.294 kb on + strand, within Rru_A0819at 976.407 kb on + strand, within Rru_A0819at 976.407 kb on + strand, within Rru_A0819at 976.407 kb on + strand, within Rru_A0819at 976.408 kb on - strand, within Rru_A0819at 976.408 kb on - strand, within Rru_A0819at 976.408 kb on - strand, within Rru_A0819at 976.408 kb on - strand, within Rru_A0819at 976.620 kb on + strand, within Rru_A0819at 976.621 kb on - strand, within Rru_A0819at 976.621 kb on - strand, within Rru_A0819at 976.638 kb on - strand, within Rru_A0819at 976.638 kb on - strand, within Rru_A0819at 976.638 kb on - strand, within Rru_A0819at 976.801 kb on + strandat 976.801 kb on + strandat 976.802 kb on - strandat 976.802 kb on - strandat 976.826 kb on + strandat 976.827 kb on - strandat 977.001 kb on - strandat 977.068 kb on - strand, within Rru_A0820at 977.218 kb on + strand, within Rru_A0820at 977.218 kb on + strand, within Rru_A0820at 977.218 kb on + strand, within Rru_A0820at 977.219 kb on - strand, within Rru_A0820at 977.219 kb on - strand, within Rru_A0820at 977.219 kb on - strand, within Rru_A0820at 977.219 kb on - strand, within Rru_A0820at 977.219 kb on - strand, within Rru_A0820at 977.426 kb on - strand, within Rru_A0820at 977.635 kb on + strand, within Rru_A0820at 977.636 kb on - strand, within Rru_A0820at 977.636 kb on - strand, within Rru_A0820at 977.843 kb on + strandat 977.843 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
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973,958 + +0.2
973,959 - +1.5
973,959 - +0.0
974,155 + Rru_A0818 0.65 -0.1
974,155 + Rru_A0818 0.65 +0.1
974,155 + Rru_A0818 0.65 +0.0
974,156 - Rru_A0818 0.65 -2.4
974,156 - Rru_A0818 0.65 -0.1
974,156 - Rru_A0818 0.65 +0.0
974,156 - Rru_A0818 0.65 +0.3
974,528 + +0.7
974,529 - +0.2
974,529 - -0.2
974,529 - -0.4
974,529 - -1.2
974,529 - -3.1
974,529 - -0.3
974,529 - -0.6
974,533 - +0.3
974,533 - +0.5
974,659 + +0.4
974,659 + +1.3
974,659 + -3.0
974,660 - -4.1
974,674 - +1.7
974,714 + +0.1
974,714 + +0.7
974,714 + +2.8
974,714 + +0.2
974,715 - -0.1
974,878 + -0.6
974,878 + -4.4
974,879 - -1.1
974,879 - +1.5
974,879 - +0.3
974,980 + +0.3
974,980 + +0.9
974,980 + -0.0
974,981 - +0.1
974,981 - -0.3
974,981 - +0.0
975,023 + -0.2
975,024 - +0.4
975,148 + Rru_A0819 0.11 -0.8
975,149 - Rru_A0819 0.11 -1.9
975,149 - Rru_A0819 0.11 -0.4
975,264 - Rru_A0819 0.17 -0.6
975,365 + Rru_A0819 0.22 -0.3
975,365 + Rru_A0819 0.22 +1.5
975,365 + Rru_A0819 0.22 -1.2
975,366 - Rru_A0819 0.22 -0.7
975,366 - Rru_A0819 0.22 +0.0
975,488 + Rru_A0819 0.28 -0.3
975,488 + Rru_A0819 0.28 -0.3
975,488 + Rru_A0819 0.28 -0.4
975,489 - Rru_A0819 0.28 +0.7
975,489 - Rru_A0819 0.28 +1.9
975,489 - Rru_A0819 0.28 +1.5
975,489 - Rru_A0819 0.28 -0.5
975,489 - Rru_A0819 0.28 +0.5
975,489 - Rru_A0819 0.28 -0.3
975,489 - Rru_A0819 0.28 -0.5
975,560 + Rru_A0819 0.32 +0.3
975,560 + Rru_A0819 0.32 +0.2
975,560 + Rru_A0819 0.32 +0.6
975,560 + Rru_A0819 0.32 -0.0
975,560 + Rru_A0819 0.32 +0.5
975,560 + Rru_A0819 0.32 -1.2
975,560 + Rru_A0819 0.32 +0.2
975,560 + Rru_A0819 0.32 +1.4
975,560 + Rru_A0819 0.32 -1.1
975,561 - Rru_A0819 0.32 -0.6
975,599 + Rru_A0819 0.34 -0.9
975,600 - Rru_A0819 0.34 -0.3
975,674 + Rru_A0819 0.38 +1.1
975,675 - Rru_A0819 0.38 +1.3
975,675 - Rru_A0819 0.38 -0.1
975,675 - Rru_A0819 0.38 -1.2
975,675 - Rru_A0819 0.38 -0.4
975,675 - Rru_A0819 0.38 -0.4
975,676 + Rru_A0819 0.38 +0.3
975,852 - Rru_A0819 0.47 +0.0
976,006 + Rru_A0819 0.55 -0.0
976,006 + Rru_A0819 0.55 +0.3
976,007 - Rru_A0819 0.55 -0.2
976,007 - Rru_A0819 0.55 -0.5
976,007 - Rru_A0819 0.55 -1.3
976,235 + Rru_A0819 0.66 +1.0
976,235 + Rru_A0819 0.66 +0.1
976,294 + Rru_A0819 0.69 +0.0
976,407 + Rru_A0819 0.75 +1.8
976,407 + Rru_A0819 0.75 +0.9
976,407 + Rru_A0819 0.75 +1.3
976,408 - Rru_A0819 0.75 +0.3
976,408 - Rru_A0819 0.75 -0.3
976,408 - Rru_A0819 0.75 +0.5
976,408 - Rru_A0819 0.75 +1.3
976,620 + Rru_A0819 0.86 +0.2
976,621 - Rru_A0819 0.86 +0.4
976,621 - Rru_A0819 0.86 -0.6
976,638 - Rru_A0819 0.87 +0.7
976,638 - Rru_A0819 0.87 -2.3
976,638 - Rru_A0819 0.87 +0.5
976,801 + +0.0
976,801 + +0.1
976,802 - -0.2
976,802 - +0.1
976,826 + +1.2
976,827 - -2.0
977,001 - +0.1
977,068 - Rru_A0820 0.17 -0.2
977,218 + Rru_A0820 0.33 -0.4
977,218 + Rru_A0820 0.33 -0.1
977,218 + Rru_A0820 0.33 +0.1
977,219 - Rru_A0820 0.33 -0.2
977,219 - Rru_A0820 0.33 +0.5
977,219 - Rru_A0820 0.33 +0.4
977,219 - Rru_A0820 0.33 -0.4
977,219 - Rru_A0820 0.33 +0.1
977,426 - Rru_A0820 0.56 +0.1
977,635 + Rru_A0820 0.79 -1.1
977,636 - Rru_A0820 0.79 -0.2
977,636 - Rru_A0820 0.79 +0.1
977,843 + -0.3
977,843 + -0.2

Or see this region's nucleotide sequence