Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0740

Experiment: Succinic Acid 31.25 mM; anaerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A0738 and Rru_A0739 overlap by 4 nucleotidesRru_A0739 and Rru_A0740 are separated by 43 nucleotidesRru_A0740 and Rru_A0741 are separated by 20 nucleotides Rru_A0738: Rru_A0738 - Glutaredoxin, GrxC (NCBI), at 864,115 to 864,381 _A0738 Rru_A0739: Rru_A0739 - Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (NCBI), at 864,378 to 865,217 _A0739 Rru_A0740: Rru_A0740 - Protein of unknown function DUF1178 (NCBI), at 865,261 to 865,794 _A0740 Rru_A0741: Rru_A0741 - Signal Transduction Histidine Kinase (NCBI), at 865,815 to 867,311 _A0741 Position (kb) 865 866Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 864.441 kb on + strandat 864.548 kb on + strand, within Rru_A0739at 864.548 kb on + strand, within Rru_A0739at 864.548 kb on + strand, within Rru_A0739at 864.549 kb on - strand, within Rru_A0739at 864.552 kb on - strand, within Rru_A0739at 864.552 kb on - strand, within Rru_A0739at 864.626 kb on + strand, within Rru_A0739at 864.626 kb on + strand, within Rru_A0739at 864.627 kb on - strand, within Rru_A0739at 864.627 kb on - strand, within Rru_A0739at 864.627 kb on - strand, within Rru_A0739at 864.627 kb on - strand, within Rru_A0739at 864.690 kb on + strand, within Rru_A0739at 864.690 kb on + strand, within Rru_A0739at 864.690 kb on + strand, within Rru_A0739at 864.690 kb on + strand, within Rru_A0739at 864.691 kb on - strand, within Rru_A0739at 864.691 kb on - strand, within Rru_A0739at 864.691 kb on - strand, within Rru_A0739at 864.691 kb on - strand, within Rru_A0739at 864.691 kb on - strand, within Rru_A0739at 864.691 kb on - strand, within Rru_A0739at 864.691 kb on - strand, within Rru_A0739at 864.691 kb on - strand, within Rru_A0739at 864.774 kb on + strand, within Rru_A0739at 864.774 kb on + strand, within Rru_A0739at 864.774 kb on + strand, within Rru_A0739at 864.775 kb on - strand, within Rru_A0739at 864.775 kb on - strand, within Rru_A0739at 864.776 kb on + strand, within Rru_A0739at 864.776 kb on + strand, within Rru_A0739at 864.776 kb on + strand, within Rru_A0739at 864.776 kb on + strand, within Rru_A0739at 864.859 kb on - strand, within Rru_A0739at 864.912 kb on + strand, within Rru_A0739at 864.913 kb on - strand, within Rru_A0739at 865.002 kb on + strand, within Rru_A0739at 865.002 kb on + strand, within Rru_A0739at 865.003 kb on - strand, within Rru_A0739at 865.003 kb on - strand, within Rru_A0739at 865.003 kb on - strand, within Rru_A0739at 865.003 kb on - strand, within Rru_A0739at 865.003 kb on - strand, within Rru_A0739at 865.054 kb on - strand, within Rru_A0739at 865.054 kb on - strand, within Rru_A0739at 865.054 kb on - strand, within Rru_A0739at 865.209 kb on - strandat 865.288 kb on + strandat 865.288 kb on + strandat 865.288 kb on + strandat 865.288 kb on + strandat 865.289 kb on - strandat 865.289 kb on - strandat 865.290 kb on + strandat 865.290 kb on + strandat 865.290 kb on + strandat 865.702 kb on + strand, within Rru_A0740at 865.702 kb on + strand, within Rru_A0740at 865.702 kb on + strand, within Rru_A0740at 865.702 kb on + strand, within Rru_A0740at 865.702 kb on + strand, within Rru_A0740at 865.703 kb on - strand, within Rru_A0740at 865.703 kb on - strand, within Rru_A0740at 865.703 kb on - strand, within Rru_A0740at 865.703 kb on - strand, within Rru_A0740at 865.703 kb on - strand, within Rru_A0740at 865.942 kb on + strandat 865.942 kb on + strandat 865.942 kb on + strandat 865.942 kb on + strandat 865.942 kb on + strandat 865.943 kb on - strandat 865.943 kb on - strandat 865.943 kb on - strandat 865.943 kb on - strandat 865.955 kb on + strandat 865.955 kb on + strandat 865.956 kb on - strandat 866.061 kb on - strand, within Rru_A0741at 866.061 kb on - strand, within Rru_A0741at 866.098 kb on + strand, within Rru_A0741at 866.098 kb on + strand, within Rru_A0741at 866.098 kb on + strand, within Rru_A0741at 866.119 kb on - strand, within Rru_A0741at 866.282 kb on + strand, within Rru_A0741at 866.282 kb on + strand, within Rru_A0741at 866.283 kb on - strand, within Rru_A0741at 866.283 kb on - strand, within Rru_A0741at 866.283 kb on - strand, within Rru_A0741at 866.283 kb on - strand, within Rru_A0741at 866.540 kb on - strand, within Rru_A0741at 866.678 kb on + strand, within Rru_A0741at 866.711 kb on + strand, within Rru_A0741at 866.723 kb on + strand, within Rru_A0741at 866.723 kb on + strand, within Rru_A0741at 866.723 kb on + strand, within Rru_A0741at 866.723 kb on + strand, within Rru_A0741at 866.724 kb on - strand, within Rru_A0741at 866.724 kb on - strand, within Rru_A0741at 866.725 kb on + strand, within Rru_A0741at 866.725 kb on + strand, within Rru_A0741at 866.726 kb on - strand, within Rru_A0741

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
remove
864,441 + +0.2
864,548 + Rru_A0739 0.20 +0.0
864,548 + Rru_A0739 0.20 +0.7
864,548 + Rru_A0739 0.20 +1.7
864,549 - Rru_A0739 0.20 +0.5
864,552 - Rru_A0739 0.21 -0.4
864,552 - Rru_A0739 0.21 +0.2
864,626 + Rru_A0739 0.30 -1.2
864,626 + Rru_A0739 0.30 +0.4
864,627 - Rru_A0739 0.30 -0.7
864,627 - Rru_A0739 0.30 +2.2
864,627 - Rru_A0739 0.30 -2.2
864,627 - Rru_A0739 0.30 -0.9
864,690 + Rru_A0739 0.37 +0.2
864,690 + Rru_A0739 0.37 +1.9
864,690 + Rru_A0739 0.37 -0.6
864,690 + Rru_A0739 0.37 -1.8
864,691 - Rru_A0739 0.37 -1.8
864,691 - Rru_A0739 0.37 -2.9
864,691 - Rru_A0739 0.37 +0.8
864,691 - Rru_A0739 0.37 -1.7
864,691 - Rru_A0739 0.37 +0.4
864,691 - Rru_A0739 0.37 +0.5
864,691 - Rru_A0739 0.37 +0.9
864,691 - Rru_A0739 0.37 -0.3
864,774 + Rru_A0739 0.47 +0.1
864,774 + Rru_A0739 0.47 -0.3
864,774 + Rru_A0739 0.47 -1.5
864,775 - Rru_A0739 0.47 +0.7
864,775 - Rru_A0739 0.47 -0.2
864,776 + Rru_A0739 0.47 -0.2
864,776 + Rru_A0739 0.47 -0.5
864,776 + Rru_A0739 0.47 -1.1
864,776 + Rru_A0739 0.47 -0.7
864,859 - Rru_A0739 0.57 -0.5
864,912 + Rru_A0739 0.64 -0.5
864,913 - Rru_A0739 0.64 -0.1
865,002 + Rru_A0739 0.74 -1.0
865,002 + Rru_A0739 0.74 -2.7
865,003 - Rru_A0739 0.74 -0.7
865,003 - Rru_A0739 0.74 +0.4
865,003 - Rru_A0739 0.74 -0.5
865,003 - Rru_A0739 0.74 -0.9
865,003 - Rru_A0739 0.74 +0.1
865,054 - Rru_A0739 0.80 -0.9
865,054 - Rru_A0739 0.80 -0.2
865,054 - Rru_A0739 0.80 -0.1
865,209 - -3.0
865,288 + -2.0
865,288 + -0.5
865,288 + -2.6
865,288 + -2.2
865,289 - -1.2
865,289 - -0.5
865,290 + -1.9
865,290 + -1.7
865,290 + -0.7
865,702 + Rru_A0740 0.83 -0.4
865,702 + Rru_A0740 0.83 -1.1
865,702 + Rru_A0740 0.83 -2.3
865,702 + Rru_A0740 0.83 -0.3
865,702 + Rru_A0740 0.83 -3.7
865,703 - Rru_A0740 0.83 -1.0
865,703 - Rru_A0740 0.83 -1.2
865,703 - Rru_A0740 0.83 -0.3
865,703 - Rru_A0740 0.83 -3.7
865,703 - Rru_A0740 0.83 -1.8
865,942 + +0.2
865,942 + -2.9
865,942 + -0.6
865,942 + +0.2
865,942 + -0.2
865,943 - -1.5
865,943 - -2.3
865,943 - -1.1
865,943 - +0.7
865,955 + -2.6
865,955 + -2.2
865,956 - -3.8
866,061 - Rru_A0741 0.16 -0.3
866,061 - Rru_A0741 0.16 +0.4
866,098 + Rru_A0741 0.19 +0.6
866,098 + Rru_A0741 0.19 +0.9
866,098 + Rru_A0741 0.19 +1.1
866,119 - Rru_A0741 0.20 -0.7
866,282 + Rru_A0741 0.31 +0.2
866,282 + Rru_A0741 0.31 -0.2
866,283 - Rru_A0741 0.31 -0.4
866,283 - Rru_A0741 0.31 -2.3
866,283 - Rru_A0741 0.31 -4.1
866,283 - Rru_A0741 0.31 -1.6
866,540 - Rru_A0741 0.48 -1.6
866,678 + Rru_A0741 0.58 -2.4
866,711 + Rru_A0741 0.60 -0.6
866,723 + Rru_A0741 0.61 -0.5
866,723 + Rru_A0741 0.61 -1.2
866,723 + Rru_A0741 0.61 +0.2
866,723 + Rru_A0741 0.61 -2.5
866,724 - Rru_A0741 0.61 +0.2
866,724 - Rru_A0741 0.61 -0.6
866,725 + Rru_A0741 0.61 -0.6
866,725 + Rru_A0741 0.61 -3.0
866,726 - Rru_A0741 0.61 +0.5

Or see this region's nucleotide sequence