Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0453

Experiment: Succinic Acid 31.25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0452 and 11438694 are separated by 67 nucleotides11438694 and 11581057 overlap by 36 nucleotides11581057 and 11723449 overlap by 36 nucleotides11723449 and 11438695 are separated by 0 nucleotides11438695 and 11581058 overlap by 30 nucleotides11581058 and 11723450 overlap by 30 nucleotides11723450 and 11438696 are separated by 0 nucleotides11438696 and 11581059 overlap by 36 nucleotides11581059 and 11723451 overlap by 36 nucleotides11723451 and 11438697 are separated by 0 nucleotides11438697 and 11581060 overlap by 30 nucleotides11581060 and 11723452 overlap by 30 nucleotides11723452 and 11438698 are separated by 0 nucleotides11438698 and 11581061 overlap by 36 nucleotides11581061 and 11723453 overlap by 36 nucleotides11723453 and 11438699 are separated by 0 nucleotides11438699 and 11581062 overlap by 30 nucleotides11581062 and 11723454 overlap by 30 nucleotides11723454 and 11438700 are separated by 0 nucleotides11438700 and 11581063 overlap by 36 nucleotides11581063 and 11723455 overlap by 36 nucleotides11723455 and 11438701 are separated by 0 nucleotides11438701 and 11581064 overlap by 30 nucleotides11581064 and 11723456 overlap by 30 nucleotides11723456 and 11438702 are separated by 0 nucleotides11438702 and 11581065 overlap by 36 nucleotides11581065 and 11723457 overlap by 36 nucleotides11723457 and 11438703 are separated by 0 nucleotides11438703 and 11581066 overlap by 30 nucleotides11581066 and 11723458 overlap by 30 nucleotides11723458 and 11438704 are separated by 0 nucleotides11438704 and 11581067 overlap by 36 nucleotides11581067 and 11723459 overlap by 36 nucleotides11723459 and 11438705 are separated by 0 nucleotides11438705 and 11581068 overlap by 30 nucleotides11581068 and 11723460 overlap by 30 nucleotides11723460 and 11438706 are separated by 0 nucleotides11438706 and 11581069 overlap by 36 nucleotides11581069 and 11723461 overlap by 36 nucleotides11723461 and 11438707 are separated by 0 nucleotides11438707 and 11581070 overlap by 30 nucleotides11581070 and 11723462 overlap by 30 nucleotides11723462 and 11438708 are separated by 0 nucleotides11438708 and 11581071 overlap by 36 nucleotides11581071 and 11723463 overlap by 36 nucleotides11723463 and Rru_A0453 are separated by 180 nucleotidesRru_A0453 and Rru_A0454 are separated by 247 nucleotides Rru_A0452: Rru_A0452 - Protein of unknown function DUF196 (NCBI), at 529,650 to 529,988 _A0452 11438694 - no description, at 530,056 to 530,091 11438694 11581057 - no description, at 530,056 to 530,091 11581057 11723449 - no description, at 530,056 to 530,091 11723449 11438695 - no description, at 530,092 to 530,121 11438695 11581058 - no description, at 530,092 to 530,121 11581058 11723450 - no description, at 530,092 to 530,121 11723450 11438696 - no description, at 530,122 to 530,157 11438696 11581059 - no description, at 530,122 to 530,157 11581059 11723451 - no description, at 530,122 to 530,157 11723451 11438697 - no description, at 530,158 to 530,187 11438697 11581060 - no description, at 530,158 to 530,187 11581060 11723452 - no description, at 530,158 to 530,187 11723452 11438698 - no description, at 530,188 to 530,223 11438698 11581061 - no description, at 530,188 to 530,223 11581061 11723453 - no description, at 530,188 to 530,223 11723453 11438699 - no description, at 530,224 to 530,253 11438699 11581062 - no description, at 530,224 to 530,253 11581062 11723454 - no description, at 530,224 to 530,253 11723454 11438700 - no description, at 530,254 to 530,289 11438700 11581063 - no description, at 530,254 to 530,289 11581063 11723455 - no description, at 530,254 to 530,289 11723455 11438701 - no description, at 530,290 to 530,319 11438701 11581064 - no description, at 530,290 to 530,319 11581064 11723456 - no description, at 530,290 to 530,319 11723456 11438702 - no description, at 530,320 to 530,355 11438702 11581065 - no description, at 530,320 to 530,355 11581065 11723457 - no description, at 530,320 to 530,355 11723457 11438703 - no description, at 530,356 to 530,385 11438703 11581066 - no description, at 530,356 to 530,385 11581066 11723458 - no description, at 530,356 to 530,385 11723458 11438704 - no description, at 530,386 to 530,421 11438704 11581067 - no description, at 530,386 to 530,421 11581067 11723459 - no description, at 530,386 to 530,421 11723459 11438705 - no description, at 530,422 to 530,451 11438705 11581068 - no description, at 530,422 to 530,451 11581068 11723460 - no description, at 530,422 to 530,451 11723460 11438706 - no description, at 530,452 to 530,487 11438706 11581069 - no description, at 530,452 to 530,487 11581069 11723461 - no description, at 530,452 to 530,487 11723461 11438707 - no description, at 530,488 to 530,517 11438707 11581070 - no description, at 530,488 to 530,517 11581070 11723462 - no description, at 530,488 to 530,517 11723462 11438708 - no description, at 530,518 to 530,553 11438708 11581071 - no description, at 530,518 to 530,553 11581071 11723463 - no description, at 530,518 to 530,553 11723463 Rru_A0453: Rru_A0453 - HNH endonuclease (NCBI), at 530,734 to 534,255 _A0453 Rru_A0454: Rru_A0454 - Leucyl aminopeptidase (NCBI), at 534,503 to 536,005 _A0454 Position (kb) 530 531 532 533 534 535Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 529.780 kb on - strand, within Rru_A0452at 529.780 kb on - strand, within Rru_A0452at 529.788 kb on + strand, within Rru_A0452at 529.789 kb on - strand, within Rru_A0452at 529.789 kb on - strand, within Rru_A0452at 529.789 kb on - strand, within Rru_A0452at 529.827 kb on + strand, within Rru_A0452at 529.877 kb on - strand, within Rru_A0452at 529.933 kb on - strand, within Rru_A0452at 529.933 kb on - strand, within Rru_A0452at 529.974 kb on + strandat 529.975 kb on - strandat 530.121 kb on + strandat 530.121 kb on + strandat 530.121 kb on + strandat 530.121 kb on + strandat 530.122 kb on - strandat 530.122 kb on - strandat 530.126 kb on + strandat 530.178 kb on + strandat 530.178 kb on + strandat 530.193 kb on - strandat 530.193 kb on - strandat 530.229 kb on - strandat 530.233 kb on - strandat 530.233 kb on - strandat 530.233 kb on - strandat 530.258 kb on + strandat 530.258 kb on + strandat 530.258 kb on + strandat 530.258 kb on + strandat 530.258 kb on + strandat 530.259 kb on - strandat 530.259 kb on - strandat 530.259 kb on - strandat 530.259 kb on - strandat 530.259 kb on - strandat 530.259 kb on - strandat 530.324 kb on + strandat 530.324 kb on + strandat 530.325 kb on - strandat 530.325 kb on - strandat 530.390 kb on + strandat 530.390 kb on + strandat 530.390 kb on + strandat 530.390 kb on + strandat 530.390 kb on + strandat 530.391 kb on - strandat 530.391 kb on - strandat 530.391 kb on - strandat 530.391 kb on - strandat 530.456 kb on + strandat 530.456 kb on + strandat 530.457 kb on - strandat 530.522 kb on + strandat 530.523 kb on - strandat 530.523 kb on - strandat 530.641 kb on + strandat 530.879 kb on + strandat 530.879 kb on + strandat 530.905 kb on + strandat 530.990 kb on + strandat 530.990 kb on + strandat 530.990 kb on + strandat 530.990 kb on + strandat 530.990 kb on + strandat 530.991 kb on - strandat 530.991 kb on - strandat 531.564 kb on + strand, within Rru_A0453at 531.564 kb on + strand, within Rru_A0453at 531.564 kb on + strand, within Rru_A0453at 531.565 kb on - strand, within Rru_A0453at 531.606 kb on - strand, within Rru_A0453at 531.687 kb on + strand, within Rru_A0453at 532.089 kb on + strand, within Rru_A0453at 532.090 kb on - strand, within Rru_A0453at 532.091 kb on + strand, within Rru_A0453at 532.091 kb on + strand, within Rru_A0453at 532.092 kb on - strand, within Rru_A0453at 532.092 kb on - strand, within Rru_A0453at 532.330 kb on - strand, within Rru_A0453at 532.330 kb on - strand, within Rru_A0453at 532.330 kb on - strand, within Rru_A0453at 532.330 kb on - strand, within Rru_A0453at 532.330 kb on - strand, within Rru_A0453at 532.385 kb on + strand, within Rru_A0453at 532.385 kb on + strand, within Rru_A0453at 532.386 kb on - strand, within Rru_A0453at 532.386 kb on - strand, within Rru_A0453at 532.428 kb on + strand, within Rru_A0453at 532.428 kb on + strand, within Rru_A0453at 532.428 kb on + strand, within Rru_A0453at 532.428 kb on + strand, within Rru_A0453at 532.429 kb on - strand, within Rru_A0453at 532.429 kb on - strand, within Rru_A0453at 532.430 kb on + strand, within Rru_A0453at 532.430 kb on + strand, within Rru_A0453at 532.431 kb on - strand, within Rru_A0453at 532.707 kb on + strand, within Rru_A0453at 532.708 kb on - strand, within Rru_A0453at 532.727 kb on + strand, within Rru_A0453at 532.728 kb on - strand, within Rru_A0453at 532.814 kb on + strand, within Rru_A0453at 532.814 kb on + strand, within Rru_A0453at 532.814 kb on + strand, within Rru_A0453at 532.815 kb on - strand, within Rru_A0453at 532.815 kb on - strand, within Rru_A0453at 532.818 kb on - strand, within Rru_A0453at 532.818 kb on - strand, within Rru_A0453at 533.105 kb on - strand, within Rru_A0453at 533.281 kb on + strand, within Rru_A0453at 533.281 kb on + strand, within Rru_A0453at 533.282 kb on - strand, within Rru_A0453at 533.364 kb on + strand, within Rru_A0453at 533.365 kb on - strand, within Rru_A0453at 533.628 kb on + strand, within Rru_A0453at 533.629 kb on - strand, within Rru_A0453at 533.630 kb on + strand, within Rru_A0453at 533.630 kb on + strand, within Rru_A0453at 533.630 kb on + strand, within Rru_A0453at 533.630 kb on + strand, within Rru_A0453at 533.631 kb on - strand, within Rru_A0453at 534.373 kb on + strandat 534.912 kb on - strand, within Rru_A0454at 534.927 kb on - strand, within Rru_A0454at 535.013 kb on + strand, within Rru_A0454at 535.089 kb on - strand, within Rru_A0454at 535.245 kb on - strand, within Rru_A0454

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
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529,780 - Rru_A0452 0.38 -0.7
529,780 - Rru_A0452 0.38 +1.1
529,788 + Rru_A0452 0.41 -0.0
529,789 - Rru_A0452 0.41 -0.8
529,789 - Rru_A0452 0.41 +0.0
529,789 - Rru_A0452 0.41 +0.4
529,827 + Rru_A0452 0.52 +0.2
529,877 - Rru_A0452 0.67 +0.1
529,933 - Rru_A0452 0.83 -0.5
529,933 - Rru_A0452 0.83 +1.2
529,974 + -0.6
529,975 - -0.1
530,121 + -2.6
530,121 + -0.2
530,121 + +1.3
530,121 + -3.3
530,122 - +1.4
530,122 - -2.5
530,126 + +0.3
530,178 + -2.3
530,178 + -1.2
530,193 - -2.1
530,193 - +0.9
530,229 - +0.9
530,233 - -0.0
530,233 - -1.8
530,233 - -1.3
530,258 + -0.1
530,258 + +0.5
530,258 + -1.1
530,258 + -0.8
530,258 + -1.5
530,259 - +0.4
530,259 - -1.8
530,259 - +0.1
530,259 - -0.5
530,259 - +1.2
530,259 - +0.4
530,324 + +0.1
530,324 + +0.1
530,325 - +0.1
530,325 - -0.4
530,390 + -0.1
530,390 + +4.0
530,390 + +0.1
530,390 + -0.4
530,390 + +0.3
530,391 - -0.1
530,391 - +1.0
530,391 - +0.6
530,391 - -0.0
530,456 + -1.0
530,456 + -0.1
530,457 - +1.4
530,522 + -0.3
530,523 - -0.4
530,523 - -0.8
530,641 + +0.1
530,879 + +1.0
530,879 + -0.9
530,905 + +0.2
530,990 + -0.4
530,990 + -0.1
530,990 + +0.5
530,990 + +0.3
530,990 + -0.3
530,991 - -0.3
530,991 - -0.4
531,564 + Rru_A0453 0.24 +0.3
531,564 + Rru_A0453 0.24 -0.8
531,564 + Rru_A0453 0.24 -0.5
531,565 - Rru_A0453 0.24 +1.1
531,606 - Rru_A0453 0.25 +0.1
531,687 + Rru_A0453 0.27 +0.8
532,089 + Rru_A0453 0.38 +0.7
532,090 - Rru_A0453 0.39 -3.6
532,091 + Rru_A0453 0.39 +0.4
532,091 + Rru_A0453 0.39 +0.1
532,092 - Rru_A0453 0.39 -0.1
532,092 - Rru_A0453 0.39 +0.5
532,330 - Rru_A0453 0.45 +0.4
532,330 - Rru_A0453 0.45 -0.2
532,330 - Rru_A0453 0.45 +0.8
532,330 - Rru_A0453 0.45 +0.1
532,330 - Rru_A0453 0.45 +2.5
532,385 + Rru_A0453 0.47 -0.1
532,385 + Rru_A0453 0.47 +0.6
532,386 - Rru_A0453 0.47 -0.3
532,386 - Rru_A0453 0.47 +0.8
532,428 + Rru_A0453 0.48 -0.1
532,428 + Rru_A0453 0.48 -0.9
532,428 + Rru_A0453 0.48 +1.5
532,428 + Rru_A0453 0.48 +0.4
532,429 - Rru_A0453 0.48 -1.6
532,429 - Rru_A0453 0.48 +0.7
532,430 + Rru_A0453 0.48 +0.1
532,430 + Rru_A0453 0.48 +0.5
532,431 - Rru_A0453 0.48 -1.4
532,707 + Rru_A0453 0.56 -0.1
532,708 - Rru_A0453 0.56 +0.4
532,727 + Rru_A0453 0.57 +0.4
532,728 - Rru_A0453 0.57 +0.3
532,814 + Rru_A0453 0.59 +1.7
532,814 + Rru_A0453 0.59 +0.4
532,814 + Rru_A0453 0.59 -0.2
532,815 - Rru_A0453 0.59 +0.4
532,815 - Rru_A0453 0.59 -0.1
532,818 - Rru_A0453 0.59 +0.1
532,818 - Rru_A0453 0.59 -1.5
533,105 - Rru_A0453 0.67 +0.6
533,281 + Rru_A0453 0.72 +0.1
533,281 + Rru_A0453 0.72 -0.3
533,282 - Rru_A0453 0.72 +0.1
533,364 + Rru_A0453 0.75 +0.3
533,365 - Rru_A0453 0.75 -1.1
533,628 + Rru_A0453 0.82 -0.0
533,629 - Rru_A0453 0.82 -0.3
533,630 + Rru_A0453 0.82 -0.0
533,630 + Rru_A0453 0.82 +0.4
533,630 + Rru_A0453 0.82 -0.1
533,630 + Rru_A0453 0.82 +0.3
533,631 - Rru_A0453 0.82 +0.2
534,373 + +0.3
534,912 - Rru_A0454 0.27 -1.3
534,927 - Rru_A0454 0.28 -1.2
535,013 + Rru_A0454 0.34 +2.1
535,089 - Rru_A0454 0.39 -2.7
535,245 - Rru_A0454 0.49 +0.5

Or see this region's nucleotide sequence