Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0370

Experiment: Succinic Acid 31.25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0369 and Rru_A0370 are separated by 5 nucleotidesRru_A0370 and Rru_A0371 overlap by 4 nucleotides Rru_A0369: Rru_A0369 - ATPase associated with various cellular activities, AAA_3 (NCBI), at 443,155 to 444,165 _A0369 Rru_A0370: Rru_A0370 - Protein of unknown function DUF58 (NCBI), at 444,171 to 445,109 _A0370 Rru_A0371: Rru_A0371 - Double-transmembrane region-like (NCBI), at 445,106 to 447,889 _A0371 Position (kb) 444 445 446Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 443.193 kb on - strandat 443.193 kb on - strandat 443.426 kb on + strand, within Rru_A0369at 443.427 kb on - strand, within Rru_A0369at 443.618 kb on - strand, within Rru_A0369at 443.648 kb on + strand, within Rru_A0369at 443.648 kb on + strand, within Rru_A0369at 443.649 kb on - strand, within Rru_A0369at 443.683 kb on + strand, within Rru_A0369at 443.683 kb on + strand, within Rru_A0369at 443.683 kb on + strand, within Rru_A0369at 443.683 kb on + strand, within Rru_A0369at 443.683 kb on + strand, within Rru_A0369at 443.684 kb on - strand, within Rru_A0369at 443.684 kb on - strand, within Rru_A0369at 443.684 kb on - strand, within Rru_A0369at 444.435 kb on + strand, within Rru_A0370at 444.495 kb on + strand, within Rru_A0370at 444.496 kb on - strand, within Rru_A0370at 444.496 kb on - strand, within Rru_A0370at 444.496 kb on - strand, within Rru_A0370at 445.123 kb on + strandat 445.123 kb on + strandat 445.139 kb on + strandat 445.139 kb on + strandat 445.139 kb on + strandat 445.140 kb on - strandat 445.140 kb on - strandat 445.140 kb on - strandat 445.140 kb on - strandat 445.276 kb on + strandat 445.277 kb on - strandat 445.349 kb on + strandat 445.349 kb on + strandat 445.349 kb on + strandat 445.349 kb on + strandat 445.350 kb on - strandat 445.351 kb on + strandat 445.459 kb on - strand, within Rru_A0371at 445.459 kb on - strand, within Rru_A0371

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
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443,193 - -2.6
443,193 - +1.1
443,426 + Rru_A0369 0.27 -1.1
443,427 - Rru_A0369 0.27 -0.0
443,618 - Rru_A0369 0.46 -2.2
443,648 + Rru_A0369 0.49 -0.8
443,648 + Rru_A0369 0.49 -0.1
443,649 - Rru_A0369 0.49 -1.0
443,683 + Rru_A0369 0.52 +0.9
443,683 + Rru_A0369 0.52 -0.8
443,683 + Rru_A0369 0.52 -2.4
443,683 + Rru_A0369 0.52 +0.9
443,683 + Rru_A0369 0.52 -1.3
443,684 - Rru_A0369 0.52 +0.2
443,684 - Rru_A0369 0.52 -0.9
443,684 - Rru_A0369 0.52 +0.5
444,435 + Rru_A0370 0.28 -0.7
444,495 + Rru_A0370 0.35 -2.7
444,496 - Rru_A0370 0.35 -0.5
444,496 - Rru_A0370 0.35 -3.1
444,496 - Rru_A0370 0.35 -1.5
445,123 + -2.4
445,123 + -1.4
445,139 + -0.2
445,139 + -3.1
445,139 + +0.2
445,140 - +1.5
445,140 - -0.1
445,140 - +1.5
445,140 - +0.5
445,276 + -0.4
445,277 - -0.1
445,349 + +2.5
445,349 + -1.5
445,349 + +0.6
445,349 + +1.0
445,350 - +1.4
445,351 + +1.5
445,459 - Rru_A0371 0.13 -1.0
445,459 - Rru_A0371 0.13 -0.0

Or see this region's nucleotide sequence