Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0333

Experiment: Succinic Acid 31.25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0331 and Rru_A0332 are separated by 69 nucleotidesRru_A0332 and Rru_A0333 are separated by 158 nucleotidesRru_A0333 and Rru_A0334 are separated by 475 nucleotides Rru_A0331: Rru_A0331 - Protein of unknown function DUF6, transmembrane (NCBI), at 403,118 to 404,086 _A0331 Rru_A0332: Rru_A0332 - Glutathione S-transferase-like (NCBI), at 404,156 to 404,845 _A0332 Rru_A0333: Rru_A0333 - Ferritin and Dps (NCBI), at 405,004 to 405,480 _A0333 Rru_A0334: Rru_A0334 - Transcriptional Regulator, LysR family (NCBI), at 405,956 to 406,918 _A0334 Position (kb) 405 406Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 404.108 kb on + strandat 404.108 kb on + strandat 404.159 kb on + strandat 404.159 kb on + strandat 404.159 kb on + strandat 404.160 kb on - strandat 404.160 kb on - strandat 404.160 kb on - strandat 404.160 kb on - strandat 404.160 kb on - strandat 404.160 kb on - strandat 404.160 kb on - strandat 404.169 kb on - strandat 404.169 kb on - strandat 404.169 kb on - strandat 404.172 kb on - strandat 404.231 kb on + strand, within Rru_A0332at 404.231 kb on + strand, within Rru_A0332at 404.231 kb on + strand, within Rru_A0332at 404.232 kb on - strand, within Rru_A0332at 404.232 kb on - strand, within Rru_A0332at 404.232 kb on - strand, within Rru_A0332at 404.233 kb on + strand, within Rru_A0332at 404.387 kb on + strand, within Rru_A0332at 404.388 kb on - strand, within Rru_A0332at 404.516 kb on + strand, within Rru_A0332at 404.537 kb on + strand, within Rru_A0332at 404.552 kb on + strand, within Rru_A0332at 404.612 kb on + strand, within Rru_A0332at 404.628 kb on - strand, within Rru_A0332at 404.797 kb on + strandat 404.797 kb on + strandat 405.019 kb on - strandat 405.019 kb on - strandat 405.222 kb on - strand, within Rru_A0333at 405.230 kb on + strand, within Rru_A0333at 405.248 kb on + strand, within Rru_A0333at 405.305 kb on + strand, within Rru_A0333at 405.305 kb on + strand, within Rru_A0333at 405.306 kb on - strand, within Rru_A0333at 405.306 kb on - strand, within Rru_A0333at 405.306 kb on - strand, within Rru_A0333at 405.306 kb on - strand, within Rru_A0333at 405.306 kb on - strand, within Rru_A0333at 405.306 kb on - strand, within Rru_A0333at 405.366 kb on - strand, within Rru_A0333at 405.384 kb on - strand, within Rru_A0333at 405.390 kb on + strand, within Rru_A0333at 405.391 kb on - strand, within Rru_A0333at 405.392 kb on + strand, within Rru_A0333at 405.392 kb on + strand, within Rru_A0333at 405.392 kb on + strand, within Rru_A0333at 405.392 kb on + strand, within Rru_A0333at 405.392 kb on + strand, within Rru_A0333at 405.392 kb on + strand, within Rru_A0333at 405.392 kb on + strand, within Rru_A0333at 405.392 kb on + strand, within Rru_A0333at 405.392 kb on + strand, within Rru_A0333at 405.392 kb on + strand, within Rru_A0333at 405.392 kb on + strand, within Rru_A0333at 405.392 kb on + strand, within Rru_A0333at 405.392 kb on + strand, within Rru_A0333at 405.392 kb on + strand, within Rru_A0333at 405.392 kb on + strand, within Rru_A0333at 405.392 kb on + strand, within Rru_A0333at 405.392 kb on + strand, within Rru_A0333at 405.392 kb on + strand, within Rru_A0333at 405.392 kb on + strand, within Rru_A0333at 405.393 kb on - strand, within Rru_A0333at 405.393 kb on - strand, within Rru_A0333at 405.393 kb on - strand, within Rru_A0333at 405.393 kb on - strand, within Rru_A0333at 405.393 kb on - strand, within Rru_A0333at 405.393 kb on - strand, within Rru_A0333at 405.393 kb on - strand, within Rru_A0333at 405.608 kb on - strandat 405.609 kb on + strandat 405.879 kb on + strandat 405.879 kb on + strandat 405.880 kb on - strandat 405.936 kb on - strandat 406.280 kb on + strand, within Rru_A0334at 406.280 kb on + strand, within Rru_A0334at 406.280 kb on + strand, within Rru_A0334at 406.280 kb on + strand, within Rru_A0334at 406.281 kb on - strand, within Rru_A0334at 406.281 kb on - strand, within Rru_A0334at 406.281 kb on - strand, within Rru_A0334at 406.319 kb on + strand, within Rru_A0334at 406.319 kb on + strand, within Rru_A0334at 406.320 kb on - strand, within Rru_A0334

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Per-strain Table

Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic
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404,108 + -2.5
404,108 + -0.6
404,159 + -0.5
404,159 + -0.4
404,159 + +0.2
404,160 - +0.8
404,160 - +0.3
404,160 - +0.3
404,160 - +1.9
404,160 - +0.0
404,160 - +0.0
404,160 - +0.2
404,169 - -3.5
404,169 - -0.0
404,169 - -2.9
404,172 - +0.3
404,231 + Rru_A0332 0.11 +0.4
404,231 + Rru_A0332 0.11 +1.1
404,231 + Rru_A0332 0.11 -2.4
404,232 - Rru_A0332 0.11 -1.0
404,232 - Rru_A0332 0.11 +1.0
404,232 - Rru_A0332 0.11 -1.4
404,233 + Rru_A0332 0.11 +0.0
404,387 + Rru_A0332 0.33 +1.9
404,388 - Rru_A0332 0.34 -1.4
404,516 + Rru_A0332 0.52 -1.3
404,537 + Rru_A0332 0.55 -1.6
404,552 + Rru_A0332 0.57 +0.2
404,612 + Rru_A0332 0.66 +0.1
404,628 - Rru_A0332 0.68 -0.4
404,797 + -0.6
404,797 + -0.9
405,019 - -0.7
405,019 - -0.7
405,222 - Rru_A0333 0.46 -0.1
405,230 + Rru_A0333 0.47 +0.4
405,248 + Rru_A0333 0.51 -0.4
405,305 + Rru_A0333 0.63 +0.2
405,305 + Rru_A0333 0.63 +0.7
405,306 - Rru_A0333 0.63 -1.9
405,306 - Rru_A0333 0.63 -1.5
405,306 - Rru_A0333 0.63 +1.6
405,306 - Rru_A0333 0.63 -2.3
405,306 - Rru_A0333 0.63 -0.1
405,306 - Rru_A0333 0.63 +0.4
405,366 - Rru_A0333 0.76 +0.1
405,384 - Rru_A0333 0.80 +0.6
405,390 + Rru_A0333 0.81 -0.1
405,391 - Rru_A0333 0.81 -1.0
405,392 + Rru_A0333 0.81 -0.2
405,392 + Rru_A0333 0.81 +0.1
405,392 + Rru_A0333 0.81 +0.1
405,392 + Rru_A0333 0.81 +0.4
405,392 + Rru_A0333 0.81 +0.3
405,392 + Rru_A0333 0.81 -2.6
405,392 + Rru_A0333 0.81 -2.0
405,392 + Rru_A0333 0.81 +0.6
405,392 + Rru_A0333 0.81 +0.0
405,392 + Rru_A0333 0.81 +0.8
405,392 + Rru_A0333 0.81 -1.5
405,392 + Rru_A0333 0.81 -1.4
405,392 + Rru_A0333 0.81 +1.5
405,392 + Rru_A0333 0.81 -0.0
405,392 + Rru_A0333 0.81 +0.5
405,392 + Rru_A0333 0.81 +0.2
405,392 + Rru_A0333 0.81 -0.2
405,392 + Rru_A0333 0.81 +0.6
405,392 + Rru_A0333 0.81 -0.2
405,393 - Rru_A0333 0.82 +1.9
405,393 - Rru_A0333 0.82 -0.8
405,393 - Rru_A0333 0.82 +3.5
405,393 - Rru_A0333 0.82 +0.5
405,393 - Rru_A0333 0.82 +0.1
405,393 - Rru_A0333 0.82 +0.4
405,393 - Rru_A0333 0.82 +0.2
405,608 - +0.0
405,609 + -0.2
405,879 + +1.0
405,879 + +0.9
405,880 - +0.7
405,936 - -0.7
406,280 + Rru_A0334 0.34 +1.6
406,280 + Rru_A0334 0.34 -2.4
406,280 + Rru_A0334 0.34 -1.6
406,280 + Rru_A0334 0.34 -1.0
406,281 - Rru_A0334 0.34 +0.0
406,281 - Rru_A0334 0.34 -2.1
406,281 - Rru_A0334 0.34 +0.2
406,319 + Rru_A0334 0.38 -3.4
406,319 + Rru_A0334 0.38 +0.0
406,320 - Rru_A0334 0.38 -0.0

Or see this region's nucleotide sequence