Experiment: Succinic Acid 31.25 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0324 and Rru_A0325 are separated by 119 nucleotides Rru_A0325 and Rru_A0326 are separated by 269 nucleotides
Rru_A0324: Rru_A0324 - Formate dehydrogenase, alpha subunit (NCBI), at 392,708 to 394,849
_A0324
Rru_A0325: Rru_A0325 - Molybdenum cofactor biosynthesis protein (NCBI), at 394,969 to 395,976
_A0325
Rru_A0326: Rru_A0326 - Transcriptional Regulator, NifA subfamily, Fis Family (NCBI), at 396,246 to 398,447
_A0326
Position (kb) 394
395
396 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 394.071 kb on - strand, within Rru_A0324 at 394.103 kb on + strand, within Rru_A0324 at 394.103 kb on + strand, within Rru_A0324 at 394.191 kb on - strand, within Rru_A0324 at 394.199 kb on - strand, within Rru_A0324 at 394.241 kb on + strand, within Rru_A0324 at 394.242 kb on - strand, within Rru_A0324 at 394.256 kb on + strand, within Rru_A0324 at 394.280 kb on + strand, within Rru_A0324 at 394.280 kb on + strand, within Rru_A0324 at 394.281 kb on - strand, within Rru_A0324 at 394.283 kb on - strand, within Rru_A0324 at 394.325 kb on + strand, within Rru_A0324 at 394.325 kb on + strand, within Rru_A0324 at 394.326 kb on - strand, within Rru_A0324 at 394.326 kb on - strand, within Rru_A0324 at 394.326 kb on - strand, within Rru_A0324 at 394.326 kb on - strand, within Rru_A0324 at 394.421 kb on + strand, within Rru_A0324 at 394.460 kb on + strand, within Rru_A0324 at 394.461 kb on - strand, within Rru_A0324 at 394.461 kb on - strand, within Rru_A0324 at 394.523 kb on + strand, within Rru_A0324 at 394.523 kb on + strand, within Rru_A0324 at 394.523 kb on + strand, within Rru_A0324 at 394.523 kb on + strand, within Rru_A0324 at 394.524 kb on - strand, within Rru_A0324 at 394.526 kb on - strand, within Rru_A0324 at 394.526 kb on - strand, within Rru_A0324 at 394.526 kb on - strand, within Rru_A0324 at 394.655 kb on + strand at 394.655 kb on + strand at 394.655 kb on + strand at 394.655 kb on + strand at 394.656 kb on - strand at 394.656 kb on - strand at 394.656 kb on - strand at 394.664 kb on + strand at 394.664 kb on + strand at 394.664 kb on + strand at 394.664 kb on + strand at 394.665 kb on - strand at 394.665 kb on - strand at 394.736 kb on + strand at 394.737 kb on - strand at 394.737 kb on - strand at 394.742 kb on + strand at 394.742 kb on + strand at 394.743 kb on - strand at 394.743 kb on - strand at 394.743 kb on - strand at 394.743 kb on - strand at 394.743 kb on - strand at 394.743 kb on - strand at 394.743 kb on - strand at 394.808 kb on + strand at 394.808 kb on + strand at 394.808 kb on + strand at 394.808 kb on + strand at 394.809 kb on - strand at 394.809 kb on - strand at 394.809 kb on - strand at 394.809 kb on - strand at 394.809 kb on - strand at 394.809 kb on - strand at 394.847 kb on + strand at 394.956 kb on - strand at 395.017 kb on + strand at 395.017 kb on + strand at 395.017 kb on + strand at 395.017 kb on + strand at 395.017 kb on + strand at 395.017 kb on + strand at 395.017 kb on + strand at 395.017 kb on + strand at 395.018 kb on - strand at 395.018 kb on - strand at 395.062 kb on + strand at 395.680 kb on + strand, within Rru_A0325 at 395.681 kb on - strand, within Rru_A0325 at 395.681 kb on - strand, within Rru_A0325 at 395.681 kb on - strand, within Rru_A0325 at 395.770 kb on - strand, within Rru_A0325 at 395.914 kb on - strand at 395.914 kb on - strand at 395.914 kb on - strand at 395.914 kb on - strand at 395.955 kb on + strand at 396.002 kb on + strand at 396.002 kb on + strand at 396.002 kb on + strand at 396.003 kb on - strand at 396.012 kb on + strand at 396.013 kb on - strand at 396.094 kb on - strand at 396.111 kb on - strand at 396.178 kb on + strand at 396.179 kb on - strand at 396.179 kb on - strand at 396.219 kb on + strand at 396.219 kb on + strand at 396.326 kb on - strand at 396.381 kb on + strand at 396.382 kb on - strand at 396.399 kb on + strand at 396.400 kb on - strand at 396.546 kb on + strand, within Rru_A0326 at 396.546 kb on + strand, within Rru_A0326 at 396.547 kb on - strand, within Rru_A0326 at 396.603 kb on + strand, within Rru_A0326 at 396.604 kb on - strand, within Rru_A0326 at 396.604 kb on - strand, within Rru_A0326 at 396.604 kb on - strand, within Rru_A0326 at 396.604 kb on - strand, within Rru_A0326 at 396.604 kb on - strand, within Rru_A0326 at 396.674 kb on + strand, within Rru_A0326 at 396.674 kb on + strand, within Rru_A0326 at 396.674 kb on + strand, within Rru_A0326 at 396.674 kb on + strand, within Rru_A0326 at 396.674 kb on + strand, within Rru_A0326 at 396.678 kb on + strand, within Rru_A0326 at 396.678 kb on + strand, within Rru_A0326 at 396.678 kb on + strand, within Rru_A0326 at 396.679 kb on - strand, within Rru_A0326 at 396.967 kb on - strand, within Rru_A0326
Per-strain Table
Position Strand Gene LocusTag Fraction Succinic Acid 31.25 mM; anaerobic remove 394,071 - Rru_A0324 0.64 -0.6 394,103 + Rru_A0324 0.65 -1.3 394,103 + Rru_A0324 0.65 -0.1 394,191 - Rru_A0324 0.69 +0.5 394,199 - Rru_A0324 0.70 -3.4 394,241 + Rru_A0324 0.72 +0.4 394,242 - Rru_A0324 0.72 -0.3 394,256 + Rru_A0324 0.72 -0.1 394,280 + Rru_A0324 0.73 -0.3 394,280 + Rru_A0324 0.73 +1.3 394,281 - Rru_A0324 0.73 +0.4 394,283 - Rru_A0324 0.74 +0.1 394,325 + Rru_A0324 0.75 -1.1 394,325 + Rru_A0324 0.75 -1.1 394,326 - Rru_A0324 0.76 -0.6 394,326 - Rru_A0324 0.76 -0.1 394,326 - Rru_A0324 0.76 -0.7 394,326 - Rru_A0324 0.76 -0.1 394,421 + Rru_A0324 0.80 -1.6 394,460 + Rru_A0324 0.82 +0.3 394,461 - Rru_A0324 0.82 +2.0 394,461 - Rru_A0324 0.82 -0.6 394,523 + Rru_A0324 0.85 -0.7 394,523 + Rru_A0324 0.85 -0.1 394,523 + Rru_A0324 0.85 -1.1 394,523 + Rru_A0324 0.85 +0.1 394,524 - Rru_A0324 0.85 -0.2 394,526 - Rru_A0324 0.85 +0.2 394,526 - Rru_A0324 0.85 -0.1 394,526 - Rru_A0324 0.85 +0.4 394,655 + -1.4 394,655 + -0.5 394,655 + +0.1 394,655 + -1.0 394,656 - -0.8 394,656 - -0.2 394,656 - -1.1 394,664 + -0.8 394,664 + -0.4 394,664 + -1.5 394,664 + -0.6 394,665 - -1.2 394,665 - -0.7 394,736 + -2.5 394,737 - -1.7 394,737 - -0.5 394,742 + +0.4 394,742 + -0.5 394,743 - -0.3 394,743 - +1.4 394,743 - -0.3 394,743 - -1.3 394,743 - -0.1 394,743 - +0.1 394,743 - -1.0 394,808 + -0.1 394,808 + -1.4 394,808 + -0.6 394,808 + -1.1 394,809 - -2.5 394,809 - +0.7 394,809 - -0.4 394,809 - +0.8 394,809 - +0.8 394,809 - -0.3 394,847 + -0.7 394,956 - -1.5 395,017 + +0.8 395,017 + -1.5 395,017 + -1.4 395,017 + -0.7 395,017 + +0.2 395,017 + +0.0 395,017 + -1.1 395,017 + -1.0 395,018 - +0.2 395,018 - -0.4 395,062 + -0.4 395,680 + Rru_A0325 0.71 -1.2 395,681 - Rru_A0325 0.71 +0.4 395,681 - Rru_A0325 0.71 +0.8 395,681 - Rru_A0325 0.71 +0.8 395,770 - Rru_A0325 0.79 +0.1 395,914 - -2.2 395,914 - +1.6 395,914 - -0.6 395,914 - -1.8 395,955 + +0.2 396,002 + -0.5 396,002 + -1.5 396,002 + -1.0 396,003 - +1.4 396,012 + +0.6 396,013 - -0.6 396,094 - -0.4 396,111 - +0.1 396,178 + -1.2 396,179 - -1.0 396,179 - +0.0 396,219 + -0.5 396,219 + +1.1 396,326 - +1.1 396,381 + -0.5 396,382 - +0.1 396,399 + +0.2 396,400 - +1.1 396,546 + Rru_A0326 0.14 +1.8 396,546 + Rru_A0326 0.14 -0.1 396,547 - Rru_A0326 0.14 -0.5 396,603 + Rru_A0326 0.16 +0.8 396,604 - Rru_A0326 0.16 -0.7 396,604 - Rru_A0326 0.16 -0.1 396,604 - Rru_A0326 0.16 -0.4 396,604 - Rru_A0326 0.16 -0.9 396,604 - Rru_A0326 0.16 +0.1 396,674 + Rru_A0326 0.19 -0.0 396,674 + Rru_A0326 0.19 +1.7 396,674 + Rru_A0326 0.19 +1.1 396,674 + Rru_A0326 0.19 +0.0 396,674 + Rru_A0326 0.19 -1.7 396,678 + Rru_A0326 0.20 +0.6 396,678 + Rru_A0326 0.20 -0.6 396,678 + Rru_A0326 0.20 -0.1 396,679 - Rru_A0326 0.20 +0.5 396,967 - Rru_A0326 0.33 -0.5
Or see this region's nucleotide sequence