Experiment: Nalidixic 0.00390625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0971 and Synpcc7942_0972 are separated by 107 nucleotides Synpcc7942_0972 and ugd overlap by 4 nucleotides
Synpcc7942_0971: Synpcc7942_0971 - hypothetical protein, at 977,903 to 979,261
_0971
Synpcc7942_0972: Synpcc7942_0972 - YjgF-like protein, at 979,369 to 979,761
_0972
Synpcc7942_0973: ugd - UDP-glucose 6-dehydrogenase, at 979,758 to 980,930
ugd
Position (kb) 979
980 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 978.372 kb on + strand, within Synpcc7942_0971 at 978.521 kb on - strand, within Synpcc7942_0971 at 978.521 kb on - strand, within Synpcc7942_0971 at 978.551 kb on - strand, within Synpcc7942_0971 at 978.560 kb on + strand, within Synpcc7942_0971 at 978.567 kb on + strand, within Synpcc7942_0971 at 978.567 kb on + strand, within Synpcc7942_0971 at 978.567 kb on + strand, within Synpcc7942_0971 at 978.567 kb on + strand, within Synpcc7942_0971 at 978.568 kb on - strand, within Synpcc7942_0971 at 978.568 kb on - strand, within Synpcc7942_0971 at 978.571 kb on - strand, within Synpcc7942_0971 at 978.573 kb on - strand, within Synpcc7942_0971 at 978.575 kb on - strand, within Synpcc7942_0971 at 978.576 kb on - strand, within Synpcc7942_0971 at 978.604 kb on - strand, within Synpcc7942_0971 at 978.606 kb on - strand, within Synpcc7942_0971 at 978.667 kb on - strand, within Synpcc7942_0971 at 978.668 kb on - strand, within Synpcc7942_0971 at 978.668 kb on - strand, within Synpcc7942_0971 at 978.709 kb on - strand, within Synpcc7942_0971 at 978.740 kb on - strand, within Synpcc7942_0971 at 978.810 kb on + strand, within Synpcc7942_0971 at 978.810 kb on + strand, within Synpcc7942_0971 at 978.812 kb on + strand, within Synpcc7942_0971 at 978.813 kb on - strand, within Synpcc7942_0971 at 978.818 kb on - strand, within Synpcc7942_0971 at 978.818 kb on - strand, within Synpcc7942_0971 at 978.818 kb on - strand, within Synpcc7942_0971 at 978.818 kb on - strand, within Synpcc7942_0971 at 978.818 kb on - strand, within Synpcc7942_0971 at 978.823 kb on - strand, within Synpcc7942_0971 at 978.827 kb on - strand, within Synpcc7942_0971 at 978.887 kb on + strand, within Synpcc7942_0971 at 978.892 kb on + strand, within Synpcc7942_0971 at 978.900 kb on - strand, within Synpcc7942_0971 at 978.900 kb on - strand, within Synpcc7942_0971 at 978.922 kb on + strand, within Synpcc7942_0971 at 978.930 kb on - strand, within Synpcc7942_0971 at 978.973 kb on - strand, within Synpcc7942_0971 at 978.984 kb on + strand, within Synpcc7942_0971 at 978.997 kb on + strand, within Synpcc7942_0971 at 979.005 kb on - strand, within Synpcc7942_0971 at 979.009 kb on - strand, within Synpcc7942_0971 at 979.009 kb on - strand, within Synpcc7942_0971 at 979.011 kb on + strand, within Synpcc7942_0971 at 979.051 kb on - strand, within Synpcc7942_0971 at 979.051 kb on - strand, within Synpcc7942_0971 at 979.053 kb on + strand, within Synpcc7942_0971 at 979.067 kb on + strand, within Synpcc7942_0971 at 979.119 kb on + strand, within Synpcc7942_0971 at 979.127 kb on - strand at 979.137 kb on - strand at 979.137 kb on - strand at 979.149 kb on + strand at 979.172 kb on + strand at 979.173 kb on + strand at 979.180 kb on - strand at 979.181 kb on - strand at 979.181 kb on - strand at 979.307 kb on + strand at 979.358 kb on + strand at 979.383 kb on + strand at 979.391 kb on - strand at 979.391 kb on - strand at 979.391 kb on - strand at 979.391 kb on - strand at 979.391 kb on - strand at 979.449 kb on + strand, within Synpcc7942_0972 at 979.452 kb on - strand, within Synpcc7942_0972 at 979.522 kb on + strand, within Synpcc7942_0972 at 979.522 kb on + strand, within Synpcc7942_0972 at 979.537 kb on + strand, within Synpcc7942_0972 at 979.537 kb on + strand, within Synpcc7942_0972 at 979.545 kb on - strand, within Synpcc7942_0972 at 979.545 kb on - strand, within Synpcc7942_0972 at 979.548 kb on + strand, within Synpcc7942_0972 at 979.548 kb on + strand, within Synpcc7942_0972 at 979.548 kb on + strand, within Synpcc7942_0972 at 979.558 kb on + strand, within Synpcc7942_0972 at 979.588 kb on - strand, within Synpcc7942_0972 at 979.596 kb on + strand, within Synpcc7942_0972 at 979.601 kb on - strand, within Synpcc7942_0972 at 979.646 kb on - strand, within Synpcc7942_0972 at 979.684 kb on + strand, within Synpcc7942_0972 at 979.691 kb on + strand, within Synpcc7942_0972 at 979.692 kb on - strand, within Synpcc7942_0972 at 979.716 kb on - strand, within Synpcc7942_0972 at 979.722 kb on + strand at 979.742 kb on + strand at 979.742 kb on + strand at 979.742 kb on + strand at 979.750 kb on - strand at 979.758 kb on - strand at 979.793 kb on + strand at 979.794 kb on - strand at 979.813 kb on + strand at 979.858 kb on + strand at 979.865 kb on - strand at 979.866 kb on - strand at 979.866 kb on - strand at 979.866 kb on - strand at 979.866 kb on - strand at 979.871 kb on - strand at 979.922 kb on - strand, within ugd at 979.978 kb on + strand, within ugd at 979.991 kb on + strand, within ugd at 979.999 kb on + strand, within ugd at 980.000 kb on - strand, within ugd at 980.007 kb on - strand, within ugd at 980.007 kb on - strand, within ugd at 980.007 kb on - strand, within ugd at 980.035 kb on + strand, within ugd at 980.040 kb on + strand, within ugd at 980.066 kb on - strand, within ugd at 980.079 kb on - strand, within ugd at 980.085 kb on - strand, within ugd at 980.091 kb on + strand, within ugd at 980.093 kb on - strand, within ugd at 980.140 kb on + strand, within ugd at 980.211 kb on + strand, within ugd at 980.212 kb on + strand, within ugd at 980.212 kb on + strand, within ugd at 980.212 kb on + strand, within ugd at 980.212 kb on + strand, within ugd at 980.212 kb on + strand, within ugd at 980.212 kb on + strand, within ugd at 980.217 kb on + strand, within ugd at 980.217 kb on + strand, within ugd at 980.217 kb on + strand, within ugd at 980.217 kb on + strand, within ugd at 980.217 kb on + strand, within ugd at 980.217 kb on + strand, within ugd at 980.219 kb on - strand, within ugd at 980.225 kb on - strand, within ugd at 980.225 kb on - strand, within ugd at 980.246 kb on - strand, within ugd at 980.246 kb on - strand, within ugd at 980.247 kb on - strand, within ugd at 980.271 kb on - strand, within ugd at 980.274 kb on + strand, within ugd at 980.277 kb on - strand, within ugd at 980.279 kb on + strand, within ugd at 980.318 kb on + strand, within ugd at 980.353 kb on - strand, within ugd at 980.362 kb on + strand, within ugd at 980.362 kb on + strand, within ugd at 980.370 kb on - strand, within ugd at 980.433 kb on + strand, within ugd at 980.440 kb on + strand, within ugd at 980.453 kb on - strand, within ugd at 980.463 kb on - strand, within ugd at 980.472 kb on + strand, within ugd at 980.527 kb on + strand, within ugd at 980.534 kb on - strand, within ugd at 980.562 kb on + strand, within ugd at 980.562 kb on + strand, within ugd at 980.570 kb on - strand, within ugd at 980.570 kb on - strand, within ugd at 980.581 kb on + strand, within ugd at 980.590 kb on - strand, within ugd at 980.629 kb on + strand, within ugd at 980.637 kb on - strand, within ugd at 980.639 kb on + strand, within ugd at 980.639 kb on + strand, within ugd at 980.647 kb on - strand, within ugd at 980.647 kb on - strand, within ugd at 980.657 kb on - strand, within ugd at 980.697 kb on - strand, within ugd at 980.744 kb on - strand, within ugd at 980.746 kb on - strand, within ugd
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.00390625 mg/ml remove 978,372 + Synpcc7942_0971 0.35 +1.0 978,521 - Synpcc7942_0971 0.45 -2.4 978,521 - Synpcc7942_0971 0.45 +0.6 978,551 - Synpcc7942_0971 0.48 -0.1 978,560 + Synpcc7942_0971 0.48 +0.7 978,567 + Synpcc7942_0971 0.49 +1.7 978,567 + Synpcc7942_0971 0.49 +0.2 978,567 + Synpcc7942_0971 0.49 +2.4 978,567 + Synpcc7942_0971 0.49 +0.6 978,568 - Synpcc7942_0971 0.49 +1.9 978,568 - Synpcc7942_0971 0.49 +2.3 978,571 - Synpcc7942_0971 0.49 +1.5 978,573 - Synpcc7942_0971 0.49 -1.4 978,575 - Synpcc7942_0971 0.49 +1.8 978,576 - Synpcc7942_0971 0.50 -0.1 978,604 - Synpcc7942_0971 0.52 +0.9 978,606 - Synpcc7942_0971 0.52 +0.2 978,667 - Synpcc7942_0971 0.56 -0.2 978,668 - Synpcc7942_0971 0.56 +0.6 978,668 - Synpcc7942_0971 0.56 +1.3 978,709 - Synpcc7942_0971 0.59 +2.4 978,740 - Synpcc7942_0971 0.62 +0.2 978,810 + Synpcc7942_0971 0.67 +1.6 978,810 + Synpcc7942_0971 0.67 +0.6 978,812 + Synpcc7942_0971 0.67 +1.4 978,813 - Synpcc7942_0971 0.67 -3.0 978,818 - Synpcc7942_0971 0.67 +1.7 978,818 - Synpcc7942_0971 0.67 +1.6 978,818 - Synpcc7942_0971 0.67 +3.3 978,818 - Synpcc7942_0971 0.67 +1.7 978,818 - Synpcc7942_0971 0.67 +0.5 978,823 - Synpcc7942_0971 0.68 +1.7 978,827 - Synpcc7942_0971 0.68 +1.2 978,887 + Synpcc7942_0971 0.72 +1.0 978,892 + Synpcc7942_0971 0.73 +2.3 978,900 - Synpcc7942_0971 0.73 -0.3 978,900 - Synpcc7942_0971 0.73 +1.8 978,922 + Synpcc7942_0971 0.75 +1.6 978,930 - Synpcc7942_0971 0.76 +0.9 978,973 - Synpcc7942_0971 0.79 +1.3 978,984 + Synpcc7942_0971 0.80 +1.4 978,997 + Synpcc7942_0971 0.81 -0.7 979,005 - Synpcc7942_0971 0.81 +1.8 979,009 - Synpcc7942_0971 0.81 -0.8 979,009 - Synpcc7942_0971 0.81 +1.2 979,011 + Synpcc7942_0971 0.82 +0.2 979,051 - Synpcc7942_0971 0.84 +1.2 979,051 - Synpcc7942_0971 0.84 +0.4 979,053 + Synpcc7942_0971 0.85 +0.2 979,067 + Synpcc7942_0971 0.86 +0.7 979,119 + Synpcc7942_0971 0.89 +2.0 979,127 - +2.2 979,137 - +2.3 979,137 - +2.3 979,149 + -0.4 979,172 + -1.1 979,173 + -1.0 979,180 - -0.1 979,181 - -0.6 979,181 - +1.6 979,307 + +1.3 979,358 + -1.0 979,383 + -0.6 979,391 - -1.4 979,391 - +0.9 979,391 - -1.4 979,391 - -1.4 979,391 - +0.6 979,449 + Synpcc7942_0972 0.20 +0.2 979,452 - Synpcc7942_0972 0.21 -1.4 979,522 + Synpcc7942_0972 0.39 +0.9 979,522 + Synpcc7942_0972 0.39 -3.4 979,537 + Synpcc7942_0972 0.43 -0.4 979,537 + Synpcc7942_0972 0.43 -1.4 979,545 - Synpcc7942_0972 0.45 -1.4 979,545 - Synpcc7942_0972 0.45 -3.0 979,548 + Synpcc7942_0972 0.46 +0.6 979,548 + Synpcc7942_0972 0.46 -0.9 979,548 + Synpcc7942_0972 0.46 -1.4 979,558 + Synpcc7942_0972 0.48 -1.0 979,588 - Synpcc7942_0972 0.56 -2.8 979,596 + Synpcc7942_0972 0.58 -0.4 979,601 - Synpcc7942_0972 0.59 -3.0 979,646 - Synpcc7942_0972 0.70 -3.0 979,684 + Synpcc7942_0972 0.80 -2.0 979,691 + Synpcc7942_0972 0.82 -2.4 979,692 - Synpcc7942_0972 0.82 -1.0 979,716 - Synpcc7942_0972 0.88 -1.4 979,722 + -0.2 979,742 + -1.4 979,742 + +0.4 979,742 + -1.4 979,750 - -2.4 979,758 - -0.4 979,793 + -1.0 979,794 - +1.7 979,813 + -0.2 979,858 + -2.4 979,865 - +0.7 979,866 - +1.8 979,866 - +0.9 979,866 - +0.6 979,866 - -0.4 979,871 - +0.2 979,922 - ugd Synpcc7942_0973 0.14 +0.6 979,978 + ugd Synpcc7942_0973 0.19 +0.5 979,991 + ugd Synpcc7942_0973 0.20 -1.4 979,999 + ugd Synpcc7942_0973 0.21 +1.8 980,000 - ugd Synpcc7942_0973 0.21 +2.3 980,007 - ugd Synpcc7942_0973 0.21 -0.7 980,007 - ugd Synpcc7942_0973 0.21 -0.1 980,007 - ugd Synpcc7942_0973 0.21 -2.4 980,035 + ugd Synpcc7942_0973 0.24 +0.9 980,040 + ugd Synpcc7942_0973 0.24 +2.0 980,066 - ugd Synpcc7942_0973 0.26 -0.3 980,079 - ugd Synpcc7942_0973 0.27 +1.0 980,085 - ugd Synpcc7942_0973 0.28 -1.4 980,091 + ugd Synpcc7942_0973 0.28 +1.9 980,093 - ugd Synpcc7942_0973 0.29 +1.8 980,140 + ugd Synpcc7942_0973 0.33 -0.8 980,211 + ugd Synpcc7942_0973 0.39 -1.0 980,212 + ugd Synpcc7942_0973 0.39 -1.4 980,212 + ugd Synpcc7942_0973 0.39 +1.2 980,212 + ugd Synpcc7942_0973 0.39 +1.2 980,212 + ugd Synpcc7942_0973 0.39 -1.1 980,212 + ugd Synpcc7942_0973 0.39 -0.8 980,212 + ugd Synpcc7942_0973 0.39 +2.2 980,217 + ugd Synpcc7942_0973 0.39 -0.3 980,217 + ugd Synpcc7942_0973 0.39 -0.1 980,217 + ugd Synpcc7942_0973 0.39 +0.2 980,217 + ugd Synpcc7942_0973 0.39 -1.1 980,217 + ugd Synpcc7942_0973 0.39 -1.1 980,217 + ugd Synpcc7942_0973 0.39 +1.0 980,219 - ugd Synpcc7942_0973 0.39 -0.6 980,225 - ugd Synpcc7942_0973 0.40 -0.3 980,225 - ugd Synpcc7942_0973 0.40 +2.5 980,246 - ugd Synpcc7942_0973 0.42 +1.2 980,246 - ugd Synpcc7942_0973 0.42 -0.1 980,247 - ugd Synpcc7942_0973 0.42 +0.6 980,271 - ugd Synpcc7942_0973 0.44 -1.4 980,274 + ugd Synpcc7942_0973 0.44 +0.4 980,277 - ugd Synpcc7942_0973 0.44 -0.2 980,279 + ugd Synpcc7942_0973 0.44 +0.2 980,318 + ugd Synpcc7942_0973 0.48 +1.4 980,353 - ugd Synpcc7942_0973 0.51 -1.4 980,362 + ugd Synpcc7942_0973 0.51 -1.4 980,362 + ugd Synpcc7942_0973 0.51 -0.6 980,370 - ugd Synpcc7942_0973 0.52 +0.6 980,433 + ugd Synpcc7942_0973 0.58 +1.6 980,440 + ugd Synpcc7942_0973 0.58 +0.2 980,453 - ugd Synpcc7942_0973 0.59 +3.1 980,463 - ugd Synpcc7942_0973 0.60 +0.3 980,472 + ugd Synpcc7942_0973 0.61 +0.3 980,527 + ugd Synpcc7942_0973 0.66 +1.7 980,534 - ugd Synpcc7942_0973 0.66 +0.6 980,562 + ugd Synpcc7942_0973 0.69 +1.1 980,562 + ugd Synpcc7942_0973 0.69 +0.2 980,570 - ugd Synpcc7942_0973 0.69 +1.4 980,570 - ugd Synpcc7942_0973 0.69 +1.8 980,581 + ugd Synpcc7942_0973 0.70 +1.6 980,590 - ugd Synpcc7942_0973 0.71 +1.1 980,629 + ugd Synpcc7942_0973 0.74 +2.1 980,637 - ugd Synpcc7942_0973 0.75 -1.4 980,639 + ugd Synpcc7942_0973 0.75 +0.3 980,639 + ugd Synpcc7942_0973 0.75 +1.0 980,647 - ugd Synpcc7942_0973 0.76 +1.1 980,647 - ugd Synpcc7942_0973 0.76 +0.9 980,657 - ugd Synpcc7942_0973 0.77 -0.0 980,697 - ugd Synpcc7942_0973 0.80 +0.3 980,744 - ugd Synpcc7942_0973 0.84 +0.2 980,746 - ugd Synpcc7942_0973 0.84 +0.9
Or see this region's nucleotide sequence