Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0728

Experiment: Nalidixic 0.00390625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_0727 and Synpcc7942_0728 are separated by 269 nucleotidesSynpcc7942_0728 and Synpcc7942_0729 are separated by 24 nucleotidesSynpcc7942_0729 and Synpcc7942_0730 are separated by 214 nucleotides Synpcc7942_0727: Synpcc7942_0727 - hypothetical protein, at 720,423 to 722,966 _0727 Synpcc7942_0728: Synpcc7942_0728 - hypothetical protein, at 723,236 to 723,781 _0728 Synpcc7942_0729: Synpcc7942_0729 - hypothetical protein, at 723,806 to 724,411 _0729 Synpcc7942_0730: Synpcc7942_0730 - hypothetical protein, at 724,626 to 725,165 _0730 Position (kb) 723 724Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 722.270 kb on + strand, within Synpcc7942_0727at 722.278 kb on - strand, within Synpcc7942_0727at 722.296 kb on + strand, within Synpcc7942_0727at 722.296 kb on + strand, within Synpcc7942_0727at 722.317 kb on + strand, within Synpcc7942_0727at 722.317 kb on + strand, within Synpcc7942_0727at 722.332 kb on + strand, within Synpcc7942_0727at 722.332 kb on + strand, within Synpcc7942_0727at 722.373 kb on - strand, within Synpcc7942_0727at 722.397 kb on - strand, within Synpcc7942_0727at 722.412 kb on - strand, within Synpcc7942_0727at 722.432 kb on - strand, within Synpcc7942_0727at 722.461 kb on - strand, within Synpcc7942_0727at 722.463 kb on + strand, within Synpcc7942_0727at 722.463 kb on + strand, within Synpcc7942_0727at 722.463 kb on + strand, within Synpcc7942_0727at 722.463 kb on + strand, within Synpcc7942_0727at 722.466 kb on - strand, within Synpcc7942_0727at 722.471 kb on - strand, within Synpcc7942_0727at 722.471 kb on - strandat 722.471 kb on - strand, within Synpcc7942_0727at 722.471 kb on - strand, within Synpcc7942_0727at 722.471 kb on - strand, within Synpcc7942_0727at 722.471 kb on - strand, within Synpcc7942_0727at 722.475 kb on + strand, within Synpcc7942_0727at 722.480 kb on - strand, within Synpcc7942_0727at 722.486 kb on + strand, within Synpcc7942_0727at 722.502 kb on - strand, within Synpcc7942_0727at 722.504 kb on - strand, within Synpcc7942_0727at 722.506 kb on - strand, within Synpcc7942_0727at 722.506 kb on - strand, within Synpcc7942_0727at 722.514 kb on - strand, within Synpcc7942_0727at 722.514 kb on - strand, within Synpcc7942_0727at 722.535 kb on + strand, within Synpcc7942_0727at 722.545 kb on + strand, within Synpcc7942_0727at 722.550 kb on + strand, within Synpcc7942_0727at 722.553 kb on - strand, within Synpcc7942_0727at 722.553 kb on - strand, within Synpcc7942_0727at 722.564 kb on + strand, within Synpcc7942_0727at 722.580 kb on - strand, within Synpcc7942_0727at 722.599 kb on + strand, within Synpcc7942_0727at 722.607 kb on - strand, within Synpcc7942_0727at 722.611 kb on + strand, within Synpcc7942_0727at 722.611 kb on + strand, within Synpcc7942_0727at 722.628 kb on + strand, within Synpcc7942_0727at 722.653 kb on - strand, within Synpcc7942_0727at 722.657 kb on + strand, within Synpcc7942_0727at 722.694 kb on - strand, within Synpcc7942_0727at 722.694 kb on - strandat 722.748 kb on + strandat 722.777 kb on + strandat 722.785 kb on - strandat 722.800 kb on + strandat 722.800 kb on + strandat 722.808 kb on - strandat 722.808 kb on - strandat 722.862 kb on - strandat 722.862 kb on - strandat 722.887 kb on + strandat 722.887 kb on + strandat 722.887 kb on + strandat 722.887 kb on + strandat 722.887 kb on + strandat 722.887 kb on + strandat 722.890 kb on - strandat 722.895 kb on - strandat 722.913 kb on + strandat 722.921 kb on - strandat 722.922 kb on + strandat 722.927 kb on + strandat 722.935 kb on + strandat 722.960 kb on + strandat 722.962 kb on + strandat 722.962 kb on + strandat 722.970 kb on + strandat 723.046 kb on - strandat 723.150 kb on + strandat 723.190 kb on + strandat 723.263 kb on - strandat 723.275 kb on + strandat 723.275 kb on + strandat 723.275 kb on + strandat 723.275 kb on + strandat 723.283 kb on - strandat 723.283 kb on - strandat 723.315 kb on + strand, within Synpcc7942_0728at 723.315 kb on + strand, within Synpcc7942_0728at 723.315 kb on + strand, within Synpcc7942_0728at 723.316 kb on + strandat 723.318 kb on + strand, within Synpcc7942_0728at 723.318 kb on + strand, within Synpcc7942_0728at 723.323 kb on - strand, within Synpcc7942_0728at 723.364 kb on + strand, within Synpcc7942_0728at 723.372 kb on - strand, within Synpcc7942_0728at 723.380 kb on + strand, within Synpcc7942_0728at 723.380 kb on + strand, within Synpcc7942_0728at 723.380 kb on + strand, within Synpcc7942_0728at 723.405 kb on + strand, within Synpcc7942_0728at 723.419 kb on + strand, within Synpcc7942_0728at 723.443 kb on + strand, within Synpcc7942_0728at 723.445 kb on + strand, within Synpcc7942_0728at 723.451 kb on - strand, within Synpcc7942_0728at 723.453 kb on - strand, within Synpcc7942_0728at 723.464 kb on + strand, within Synpcc7942_0728at 723.474 kb on - strand, within Synpcc7942_0728at 723.485 kb on + strand, within Synpcc7942_0728at 723.490 kb on + strand, within Synpcc7942_0728at 723.499 kb on - strand, within Synpcc7942_0728at 723.513 kb on - strand, within Synpcc7942_0728at 723.524 kb on + strand, within Synpcc7942_0728at 723.524 kb on + strand, within Synpcc7942_0728at 723.532 kb on - strand, within Synpcc7942_0728at 723.532 kb on - strand, within Synpcc7942_0728at 723.555 kb on + strand, within Synpcc7942_0728at 723.555 kb on + strand, within Synpcc7942_0728at 723.555 kb on + strand, within Synpcc7942_0728at 723.567 kb on + strand, within Synpcc7942_0728at 723.577 kb on + strand, within Synpcc7942_0728at 723.577 kb on + strand, within Synpcc7942_0728at 723.585 kb on - strand, within Synpcc7942_0728at 723.597 kb on - strand, within Synpcc7942_0728at 723.597 kb on - strand, within Synpcc7942_0728at 723.603 kb on - strand, within Synpcc7942_0728at 723.611 kb on + strand, within Synpcc7942_0728at 723.621 kb on - strand, within Synpcc7942_0728at 723.621 kb on - strand, within Synpcc7942_0728at 723.623 kb on + strand, within Synpcc7942_0728at 723.631 kb on - strand, within Synpcc7942_0728at 723.631 kb on - strand, within Synpcc7942_0728at 723.631 kb on - strand, within Synpcc7942_0728at 723.631 kb on - strand, within Synpcc7942_0728at 723.666 kb on - strand, within Synpcc7942_0728at 723.667 kb on + strand, within Synpcc7942_0728at 723.667 kb on - strand, within Synpcc7942_0728at 723.673 kb on + strand, within Synpcc7942_0728at 723.679 kb on + strand, within Synpcc7942_0728at 723.681 kb on - strand, within Synpcc7942_0728at 723.681 kb on - strand, within Synpcc7942_0728at 723.681 kb on - strand, within Synpcc7942_0728at 723.681 kb on - strand, within Synpcc7942_0728at 723.681 kb on - strandat 723.687 kb on + strand, within Synpcc7942_0728at 723.695 kb on - strand, within Synpcc7942_0728at 723.705 kb on - strand, within Synpcc7942_0728at 723.722 kb on + strand, within Synpcc7942_0728at 723.746 kb on + strandat 723.746 kb on + strandat 723.746 kb on + strandat 723.746 kb on + strandat 723.746 kb on + strandat 723.762 kb on + strandat 723.770 kb on - strandat 723.792 kb on + strandat 723.797 kb on + strandat 723.797 kb on + strandat 723.797 kb on + strandat 723.797 kb on + strandat 723.797 kb on + strandat 723.805 kb on - strandat 723.805 kb on - strandat 723.806 kb on + strandat 723.830 kb on + strandat 723.830 kb on + strandat 723.830 kb on + strandat 723.838 kb on - strandat 723.858 kb on - strandat 723.878 kb on + strand, within Synpcc7942_0729at 723.886 kb on - strand, within Synpcc7942_0729at 723.914 kb on + strand, within Synpcc7942_0729at 723.923 kb on - strand, within Synpcc7942_0729at 723.949 kb on + strand, within Synpcc7942_0729at 723.949 kb on + strand, within Synpcc7942_0729at 723.951 kb on - strand, within Synpcc7942_0729at 723.964 kb on + strand, within Synpcc7942_0729at 724.005 kb on - strand, within Synpcc7942_0729at 724.005 kb on - strand, within Synpcc7942_0729at 724.023 kb on - strand, within Synpcc7942_0729at 724.047 kb on + strand, within Synpcc7942_0729at 724.047 kb on - strand, within Synpcc7942_0729at 724.082 kb on - strand, within Synpcc7942_0729at 724.082 kb on - strand, within Synpcc7942_0729at 724.098 kb on - strand, within Synpcc7942_0729at 724.107 kb on + strand, within Synpcc7942_0729at 724.115 kb on - strand, within Synpcc7942_0729at 724.130 kb on + strand, within Synpcc7942_0729at 724.132 kb on + strand, within Synpcc7942_0729at 724.138 kb on - strand, within Synpcc7942_0729at 724.165 kb on + strand, within Synpcc7942_0729at 724.165 kb on + strand, within Synpcc7942_0729at 724.187 kb on + strand, within Synpcc7942_0729at 724.187 kb on + strand, within Synpcc7942_0729at 724.187 kb on + strand, within Synpcc7942_0729at 724.187 kb on + strand, within Synpcc7942_0729at 724.195 kb on - strand, within Synpcc7942_0729at 724.195 kb on - strand, within Synpcc7942_0729at 724.195 kb on - strand, within Synpcc7942_0729at 724.195 kb on - strand, within Synpcc7942_0729at 724.195 kb on - strand, within Synpcc7942_0729at 724.198 kb on + strand, within Synpcc7942_0729at 724.200 kb on + strand, within Synpcc7942_0729at 724.200 kb on - strand, within Synpcc7942_0729at 724.232 kb on - strand, within Synpcc7942_0729at 724.244 kb on + strand, within Synpcc7942_0729at 724.279 kb on + strand, within Synpcc7942_0729at 724.336 kb on + strand, within Synpcc7942_0729at 724.347 kb on + strand, within Synpcc7942_0729at 724.347 kb on + strand, within Synpcc7942_0729at 724.357 kb on + strandat 724.357 kb on + strandat 724.362 kb on + strandat 724.365 kb on - strandat 724.405 kb on + strandat 724.413 kb on - strandat 724.413 kb on - strandat 724.470 kb on + strandat 724.470 kb on + strandat 724.470 kb on + strandat 724.470 kb on + strandat 724.471 kb on - strandat 724.478 kb on - strandat 724.479 kb on - strandat 724.518 kb on - strandat 724.537 kb on - strandat 724.650 kb on - strandat 724.676 kb on + strandat 724.676 kb on + strandat 724.681 kb on + strand, within Synpcc7942_0730at 724.681 kb on + strand, within Synpcc7942_0730at 724.684 kb on - strand, within Synpcc7942_0730at 724.684 kb on - strand, within Synpcc7942_0730at 724.687 kb on - strand, within Synpcc7942_0730at 724.696 kb on - strand, within Synpcc7942_0730at 724.734 kb on + strand, within Synpcc7942_0730at 724.742 kb on - strand, within Synpcc7942_0730at 724.748 kb on + strand, within Synpcc7942_0730at 724.748 kb on + strand, within Synpcc7942_0730at 724.754 kb on - strand, within Synpcc7942_0730at 724.777 kb on + strandat 724.777 kb on - strand, within Synpcc7942_0730

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Per-strain Table

Position Strand Gene LocusTag Fraction Nalidixic 0.00390625 mg/ml
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722,270 + Synpcc7942_0727 0.73 -0.9
722,278 - Synpcc7942_0727 0.73 +0.8
722,296 + Synpcc7942_0727 0.74 +0.5
722,296 + Synpcc7942_0727 0.74 +1.0
722,317 + Synpcc7942_0727 0.74 -1.0
722,317 + Synpcc7942_0727 0.74 +0.4
722,332 + Synpcc7942_0727 0.75 +1.3
722,332 + Synpcc7942_0727 0.75 +0.3
722,373 - Synpcc7942_0727 0.77 -1.2
722,397 - Synpcc7942_0727 0.78 +2.0
722,412 - Synpcc7942_0727 0.78 +2.3
722,432 - Synpcc7942_0727 0.79 +0.3
722,461 - Synpcc7942_0727 0.80 -1.4
722,463 + Synpcc7942_0727 0.80 +0.6
722,463 + Synpcc7942_0727 0.80 +0.8
722,463 + Synpcc7942_0727 0.80 +2.7
722,463 + Synpcc7942_0727 0.80 -0.4
722,466 - Synpcc7942_0727 0.80 -0.3
722,471 - Synpcc7942_0727 0.81 +0.8
722,471 - -1.4
722,471 - Synpcc7942_0727 0.81 +1.2
722,471 - Synpcc7942_0727 0.81 +0.0
722,471 - Synpcc7942_0727 0.81 -1.4
722,471 - Synpcc7942_0727 0.81 -0.4
722,475 + Synpcc7942_0727 0.81 -0.4
722,480 - Synpcc7942_0727 0.81 +2.5
722,486 + Synpcc7942_0727 0.81 -1.4
722,502 - Synpcc7942_0727 0.82 +0.1
722,504 - Synpcc7942_0727 0.82 +0.2
722,506 - Synpcc7942_0727 0.82 -0.1
722,506 - Synpcc7942_0727 0.82 -1.1
722,514 - Synpcc7942_0727 0.82 +0.7
722,514 - Synpcc7942_0727 0.82 -0.3
722,535 + Synpcc7942_0727 0.83 -0.4
722,545 + Synpcc7942_0727 0.83 +1.0
722,550 + Synpcc7942_0727 0.84 +1.0
722,553 - Synpcc7942_0727 0.84 +0.6
722,553 - Synpcc7942_0727 0.84 -0.4
722,564 + Synpcc7942_0727 0.84 -3.0
722,580 - Synpcc7942_0727 0.85 +2.1
722,599 + Synpcc7942_0727 0.86 -2.0
722,607 - Synpcc7942_0727 0.86 -2.0
722,611 + Synpcc7942_0727 0.86 +0.7
722,611 + Synpcc7942_0727 0.86 +0.6
722,628 + Synpcc7942_0727 0.87 -1.0
722,653 - Synpcc7942_0727 0.88 +0.9
722,657 + Synpcc7942_0727 0.88 +3.6
722,694 - Synpcc7942_0727 0.89 +2.8
722,694 - -1.4
722,748 + +0.5
722,777 + -0.4
722,785 - -0.4
722,800 + +0.6
722,800 + +1.3
722,808 - +0.1
722,808 - +1.9
722,862 - -1.4
722,862 - -1.4
722,887 + -1.4
722,887 + +0.7
722,887 + -1.4
722,887 + +1.0
722,887 + +2.0
722,887 + -0.4
722,890 - +0.4
722,895 - +2.7
722,913 + +0.1
722,921 - -1.4
722,922 + +0.4
722,927 + +2.1
722,935 + +0.3
722,960 + +0.8
722,962 + +2.0
722,962 + +1.6
722,970 + +0.1
723,046 - +0.8
723,150 + -0.4
723,190 + +0.1
723,263 - +2.9
723,275 + +2.2
723,275 + +2.1
723,275 + +1.1
723,275 + -1.4
723,283 - -0.2
723,283 - +0.1
723,315 + Synpcc7942_0728 0.14 +0.0
723,315 + Synpcc7942_0728 0.14 -0.1
723,315 + Synpcc7942_0728 0.14 +0.9
723,316 + -1.4
723,318 + Synpcc7942_0728 0.15 -1.3
723,318 + Synpcc7942_0728 0.15 +0.1
723,323 - Synpcc7942_0728 0.16 -3.4
723,364 + Synpcc7942_0728 0.23 +0.9
723,372 - Synpcc7942_0728 0.25 +0.9
723,380 + Synpcc7942_0728 0.26 +0.1
723,380 + Synpcc7942_0728 0.26 +1.6
723,380 + Synpcc7942_0728 0.26 +1.0
723,405 + Synpcc7942_0728 0.31 +0.9
723,419 + Synpcc7942_0728 0.34 -1.8
723,443 + Synpcc7942_0728 0.38 -0.1
723,445 + Synpcc7942_0728 0.38 -0.6
723,451 - Synpcc7942_0728 0.39 -0.3
723,453 - Synpcc7942_0728 0.40 -0.4
723,464 + Synpcc7942_0728 0.42 +1.0
723,474 - Synpcc7942_0728 0.44 +1.1
723,485 + Synpcc7942_0728 0.46 -0.3
723,490 + Synpcc7942_0728 0.47 -0.1
723,499 - Synpcc7942_0728 0.48 -1.4
723,513 - Synpcc7942_0728 0.51 +0.1
723,524 + Synpcc7942_0728 0.53 +0.3
723,524 + Synpcc7942_0728 0.53 +0.7
723,532 - Synpcc7942_0728 0.54 +1.6
723,532 - Synpcc7942_0728 0.54 +0.9
723,555 + Synpcc7942_0728 0.58 -0.6
723,555 + Synpcc7942_0728 0.58 +0.6
723,555 + Synpcc7942_0728 0.58 -0.6
723,567 + Synpcc7942_0728 0.61 +1.4
723,577 + Synpcc7942_0728 0.62 -3.0
723,577 + Synpcc7942_0728 0.62 +0.4
723,585 - Synpcc7942_0728 0.64 +0.1
723,597 - Synpcc7942_0728 0.66 +1.8
723,597 - Synpcc7942_0728 0.66 -0.4
723,603 - Synpcc7942_0728 0.67 -0.2
723,611 + Synpcc7942_0728 0.69 -1.4
723,621 - Synpcc7942_0728 0.71 +2.6
723,621 - Synpcc7942_0728 0.71 -2.0
723,623 + Synpcc7942_0728 0.71 +2.2
723,631 - Synpcc7942_0728 0.72 -0.9
723,631 - Synpcc7942_0728 0.72 +0.1
723,631 - Synpcc7942_0728 0.72 +1.4
723,631 - Synpcc7942_0728 0.72 +1.2
723,666 - Synpcc7942_0728 0.79 -0.5
723,667 + Synpcc7942_0728 0.79 -0.9
723,667 - Synpcc7942_0728 0.79 -0.7
723,673 + Synpcc7942_0728 0.80 -4.3
723,679 + Synpcc7942_0728 0.81 +0.0
723,681 - Synpcc7942_0728 0.82 +0.5
723,681 - Synpcc7942_0728 0.82 -0.4
723,681 - Synpcc7942_0728 0.82 +0.9
723,681 - Synpcc7942_0728 0.82 -1.2
723,681 - +0.9
723,687 + Synpcc7942_0728 0.83 -0.2
723,695 - Synpcc7942_0728 0.84 +1.4
723,705 - Synpcc7942_0728 0.86 +0.0
723,722 + Synpcc7942_0728 0.89 +0.1
723,746 + -0.4
723,746 + -0.4
723,746 + +0.9
723,746 + -1.4
723,746 + +0.0
723,762 + -2.4
723,770 - -0.4
723,792 + -0.3
723,797 + -0.3
723,797 + -2.2
723,797 + +1.4
723,797 + +0.4
723,797 + -2.4
723,805 - +0.3
723,805 - -0.3
723,806 + +0.6
723,830 + +1.3
723,830 + -1.4
723,830 + +1.6
723,838 - +1.0
723,858 - -0.6
723,878 + Synpcc7942_0729 0.12 -0.4
723,886 - Synpcc7942_0729 0.13 +0.7
723,914 + Synpcc7942_0729 0.18 +0.6
723,923 - Synpcc7942_0729 0.19 +0.6
723,949 + Synpcc7942_0729 0.24 +0.3
723,949 + Synpcc7942_0729 0.24 +1.9
723,951 - Synpcc7942_0729 0.24 -0.1
723,964 + Synpcc7942_0729 0.26 +2.5
724,005 - Synpcc7942_0729 0.33 -0.4
724,005 - Synpcc7942_0729 0.33 +0.8
724,023 - Synpcc7942_0729 0.36 -0.2
724,047 + Synpcc7942_0729 0.40 +0.9
724,047 - Synpcc7942_0729 0.40 +1.1
724,082 - Synpcc7942_0729 0.46 +0.4
724,082 - Synpcc7942_0729 0.46 -1.0
724,098 - Synpcc7942_0729 0.48 -0.9
724,107 + Synpcc7942_0729 0.50 +0.7
724,115 - Synpcc7942_0729 0.51 -1.4
724,130 + Synpcc7942_0729 0.53 -1.4
724,132 + Synpcc7942_0729 0.54 +0.8
724,138 - Synpcc7942_0729 0.55 -0.7
724,165 + Synpcc7942_0729 0.59 +0.9
724,165 + Synpcc7942_0729 0.59 -1.0
724,187 + Synpcc7942_0729 0.63 -0.1
724,187 + Synpcc7942_0729 0.63 +0.6
724,187 + Synpcc7942_0729 0.63 +0.1
724,187 + Synpcc7942_0729 0.63 -1.2
724,195 - Synpcc7942_0729 0.64 +0.6
724,195 - Synpcc7942_0729 0.64 -1.4
724,195 - Synpcc7942_0729 0.64 +1.3
724,195 - Synpcc7942_0729 0.64 -0.4
724,195 - Synpcc7942_0729 0.64 +2.9
724,198 + Synpcc7942_0729 0.65 +2.1
724,200 + Synpcc7942_0729 0.65 +1.6
724,200 - Synpcc7942_0729 0.65 -1.4
724,232 - Synpcc7942_0729 0.70 -0.9
724,244 + Synpcc7942_0729 0.72 -0.1
724,279 + Synpcc7942_0729 0.78 +2.1
724,336 + Synpcc7942_0729 0.87 -0.8
724,347 + Synpcc7942_0729 0.89 +1.5
724,347 + Synpcc7942_0729 0.89 +0.3
724,357 + +1.1
724,357 + +0.5
724,362 + +0.3
724,365 - +0.6
724,405 + +1.8
724,413 - +1.0
724,413 - +1.0
724,470 + +1.6
724,470 + -2.4
724,470 + -0.9
724,470 + +1.6
724,471 - +0.5
724,478 - +1.3
724,479 - +0.9
724,518 - +0.1
724,537 - +1.6
724,650 - +0.1
724,676 + +0.9
724,676 + +0.3
724,681 + Synpcc7942_0730 0.10 +0.6
724,681 + Synpcc7942_0730 0.10 +0.4
724,684 - Synpcc7942_0730 0.11 +1.1
724,684 - Synpcc7942_0730 0.11 +3.8
724,687 - Synpcc7942_0730 0.11 +0.4
724,696 - Synpcc7942_0730 0.13 +1.8
724,734 + Synpcc7942_0730 0.20 -0.0
724,742 - Synpcc7942_0730 0.21 +1.6
724,748 + Synpcc7942_0730 0.23 +0.4
724,748 + Synpcc7942_0730 0.23 -0.4
724,754 - Synpcc7942_0730 0.24 -1.1
724,777 + -0.9
724,777 - Synpcc7942_0730 0.28 +1.9

Or see this region's nucleotide sequence