Experiment: Nalidixic 0.00390625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt purT and Synpcc7942_0589 are separated by 70 nucleotides Synpcc7942_0589 and Synpcc7942_0590 are separated by 46 nucleotides Synpcc7942_0590 and Synpcc7942_0591 are separated by 4 nucleotides Synpcc7942_0591 and pfkA are separated by 13 nucleotides
Synpcc7942_0588: purT - phosphoribosylglycinamide formyltransferase 2, at 576,665 to 577,840
purT
Synpcc7942_0589: Synpcc7942_0589 - Fe-S-cluster oxidoreductase-like, at 577,911 to 578,573
_0589
Synpcc7942_0590: Synpcc7942_0590 - membrane protein-like, at 578,620 to 578,967
_0590
Synpcc7942_0591: Synpcc7942_0591 - membrane protein-like, at 578,972 to 579,298
_0591
Synpcc7942_0592: pfkA - 6-phosphofructokinase, at 579,312 to 580,394
pfkA
Position (kb) 578
579 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 577.624 kb on - strand, within purT at 577.688 kb on + strand, within purT at 577.789 kb on + strand at 577.789 kb on + strand at 577.797 kb on - strand at 577.797 kb on - strand at 577.797 kb on - strand at 577.862 kb on - strand at 577.881 kb on + strand at 577.934 kb on + strand at 577.936 kb on + strand at 577.938 kb on + strand at 577.939 kb on + strand at 577.939 kb on + strand at 577.944 kb on + strand at 577.944 kb on + strand at 577.947 kb on - strand at 577.951 kb on + strand at 578.063 kb on - strand, within Synpcc7942_0589 at 578.090 kb on - strand, within Synpcc7942_0589 at 578.165 kb on + strand, within Synpcc7942_0589 at 578.173 kb on - strand, within Synpcc7942_0589 at 578.173 kb on - strand, within Synpcc7942_0589 at 578.181 kb on + strand, within Synpcc7942_0589 at 578.181 kb on + strand, within Synpcc7942_0589 at 578.204 kb on - strand, within Synpcc7942_0589 at 578.555 kb on + strand at 578.555 kb on + strand at 578.555 kb on + strand at 578.575 kb on + strand at 578.575 kb on + strand at 578.575 kb on - strand at 578.666 kb on - strand, within Synpcc7942_0590 at 578.679 kb on + strand, within Synpcc7942_0590 at 578.679 kb on + strand, within Synpcc7942_0590 at 578.693 kb on - strand, within Synpcc7942_0590 at 578.759 kb on - strand, within Synpcc7942_0590 at 578.759 kb on - strand, within Synpcc7942_0590 at 578.763 kb on + strand, within Synpcc7942_0590 at 578.787 kb on + strand, within Synpcc7942_0590 at 578.787 kb on + strand, within Synpcc7942_0590 at 578.795 kb on - strand, within Synpcc7942_0590 at 578.797 kb on + strand, within Synpcc7942_0590 at 578.818 kb on + strand, within Synpcc7942_0590 at 578.818 kb on + strand, within Synpcc7942_0590 at 578.826 kb on - strand, within Synpcc7942_0590 at 578.826 kb on - strand, within Synpcc7942_0590 at 578.888 kb on + strand, within Synpcc7942_0590 at 578.888 kb on + strand, within Synpcc7942_0590 at 578.916 kb on + strand, within Synpcc7942_0590 at 578.932 kb on + strand, within Synpcc7942_0590 at 578.932 kb on + strand, within Synpcc7942_0590 at 578.948 kb on + strand at 578.970 kb on - strand at 579.066 kb on + strand, within Synpcc7942_0591 at 579.136 kb on + strand, within Synpcc7942_0591 at 579.137 kb on + strand, within Synpcc7942_0591 at 579.144 kb on - strand, within Synpcc7942_0591 at 579.144 kb on - strand, within Synpcc7942_0591 at 579.158 kb on + strand, within Synpcc7942_0591 at 579.216 kb on + strand, within Synpcc7942_0591 at 579.237 kb on + strand, within Synpcc7942_0591 at 579.285 kb on + strand at 579.292 kb on + strand at 579.292 kb on + strand at 579.293 kb on + strand at 579.294 kb on - strand at 579.294 kb on - strand at 579.300 kb on - strand at 579.304 kb on + strand at 579.326 kb on + strand at 579.328 kb on + strand at 579.331 kb on + strand at 579.354 kb on + strand at 579.358 kb on - strand at 579.387 kb on + strand at 579.394 kb on - strand at 579.411 kb on - strand at 579.419 kb on + strand at 579.427 kb on - strand, within pfkA at 579.427 kb on - strand, within pfkA at 579.427 kb on - strand, within pfkA at 579.476 kb on + strand, within pfkA at 579.483 kb on - strand, within pfkA at 579.513 kb on + strand, within pfkA at 579.525 kb on + strand, within pfkA at 579.531 kb on + strand, within pfkA at 579.544 kb on + strand, within pfkA at 579.575 kb on - strand, within pfkA at 579.577 kb on - strand, within pfkA at 579.599 kb on - strand, within pfkA at 579.616 kb on + strand, within pfkA at 579.619 kb on - strand, within pfkA at 579.634 kb on + strand, within pfkA at 579.634 kb on + strand, within pfkA at 579.642 kb on - strand, within pfkA at 579.645 kb on + strand, within pfkA at 579.671 kb on + strand, within pfkA at 579.685 kb on - strand, within pfkA at 579.700 kb on - strand, within pfkA at 579.703 kb on + strand, within pfkA at 579.732 kb on - strand, within pfkA at 579.752 kb on + strand, within pfkA at 579.755 kb on + strand, within pfkA at 579.763 kb on - strand, within pfkA at 579.804 kb on + strand at 579.872 kb on - strand, within pfkA at 579.873 kb on - strand, within pfkA at 579.873 kb on - strand, within pfkA at 579.902 kb on + strand, within pfkA at 579.902 kb on + strand, within pfkA at 579.910 kb on - strand, within pfkA at 579.910 kb on - strand, within pfkA at 579.910 kb on - strand, within pfkA at 579.921 kb on - strand, within pfkA at 579.940 kb on - strand, within pfkA at 579.942 kb on + strand, within pfkA at 579.961 kb on - strand, within pfkA at 579.966 kb on + strand, within pfkA
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.00390625 mg/ml remove 577,624 - purT Synpcc7942_0588 0.82 -2.4 577,688 + purT Synpcc7942_0588 0.87 -2.4 577,789 + -4.2 577,789 + -3.4 577,797 - -0.2 577,797 - -2.4 577,797 - -1.4 577,862 - -0.0 577,881 + -1.4 577,934 + +0.4 577,936 + +0.7 577,938 + -0.4 577,939 + -0.4 577,939 + +0.2 577,944 + -0.4 577,944 + +0.6 577,947 - -1.4 577,951 + -1.2 578,063 - Synpcc7942_0589 0.23 -3.0 578,090 - Synpcc7942_0589 0.27 -3.2 578,165 + Synpcc7942_0589 0.38 +2.7 578,173 - Synpcc7942_0589 0.40 -1.1 578,173 - Synpcc7942_0589 0.40 +0.2 578,181 + Synpcc7942_0589 0.41 -2.0 578,181 + Synpcc7942_0589 0.41 +0.1 578,204 - Synpcc7942_0589 0.44 +0.4 578,555 + +0.6 578,555 + +1.8 578,555 + +1.8 578,575 + +0.6 578,575 + -0.6 578,575 - -0.2 578,666 - Synpcc7942_0590 0.13 +0.4 578,679 + Synpcc7942_0590 0.17 -2.4 578,679 + Synpcc7942_0590 0.17 -0.7 578,693 - Synpcc7942_0590 0.21 -0.9 578,759 - Synpcc7942_0590 0.40 -1.7 578,759 - Synpcc7942_0590 0.40 -0.6 578,763 + Synpcc7942_0590 0.41 -3.0 578,787 + Synpcc7942_0590 0.48 -1.4 578,787 + Synpcc7942_0590 0.48 +0.4 578,795 - Synpcc7942_0590 0.50 -1.4 578,797 + Synpcc7942_0590 0.51 +1.4 578,818 + Synpcc7942_0590 0.57 -0.9 578,818 + Synpcc7942_0590 0.57 +1.2 578,826 - Synpcc7942_0590 0.59 -0.2 578,826 - Synpcc7942_0590 0.59 +0.6 578,888 + Synpcc7942_0590 0.77 +0.5 578,888 + Synpcc7942_0590 0.77 -2.0 578,916 + Synpcc7942_0590 0.85 -4.7 578,932 + Synpcc7942_0590 0.90 +3.4 578,932 + Synpcc7942_0590 0.90 -0.9 578,948 + +0.3 578,970 - +1.2 579,066 + Synpcc7942_0591 0.29 -3.4 579,136 + Synpcc7942_0591 0.50 -1.4 579,137 + Synpcc7942_0591 0.50 -2.2 579,144 - Synpcc7942_0591 0.53 -1.4 579,144 - Synpcc7942_0591 0.53 +0.2 579,158 + Synpcc7942_0591 0.57 -0.4 579,216 + Synpcc7942_0591 0.75 +0.2 579,237 + Synpcc7942_0591 0.81 +0.9 579,285 + +1.2 579,292 + +1.9 579,292 + -3.0 579,293 + +1.2 579,294 - +0.2 579,294 - -1.2 579,300 - +1.6 579,304 + +1.4 579,326 + +0.5 579,328 + -2.0 579,331 + +1.2 579,354 + +0.4 579,358 - +1.3 579,387 + -0.3 579,394 - +0.4 579,411 - +0.3 579,419 + +0.9 579,427 - pfkA Synpcc7942_0592 0.11 +0.7 579,427 - pfkA Synpcc7942_0592 0.11 +1.8 579,427 - pfkA Synpcc7942_0592 0.11 +1.1 579,476 + pfkA Synpcc7942_0592 0.15 +0.6 579,483 - pfkA Synpcc7942_0592 0.16 +1.5 579,513 + pfkA Synpcc7942_0592 0.19 +1.6 579,525 + pfkA Synpcc7942_0592 0.20 +0.6 579,531 + pfkA Synpcc7942_0592 0.20 +0.3 579,544 + pfkA Synpcc7942_0592 0.21 -0.4 579,575 - pfkA Synpcc7942_0592 0.24 +0.3 579,577 - pfkA Synpcc7942_0592 0.24 -0.6 579,599 - pfkA Synpcc7942_0592 0.27 +1.2 579,616 + pfkA Synpcc7942_0592 0.28 -0.2 579,619 - pfkA Synpcc7942_0592 0.28 +1.4 579,634 + pfkA Synpcc7942_0592 0.30 +1.1 579,634 + pfkA Synpcc7942_0592 0.30 +1.6 579,642 - pfkA Synpcc7942_0592 0.30 +1.7 579,645 + pfkA Synpcc7942_0592 0.31 -2.2 579,671 + pfkA Synpcc7942_0592 0.33 -0.6 579,685 - pfkA Synpcc7942_0592 0.34 -0.4 579,700 - pfkA Synpcc7942_0592 0.36 +1.9 579,703 + pfkA Synpcc7942_0592 0.36 -1.0 579,732 - pfkA Synpcc7942_0592 0.39 -1.7 579,752 + pfkA Synpcc7942_0592 0.41 +0.9 579,755 + pfkA Synpcc7942_0592 0.41 +0.9 579,763 - pfkA Synpcc7942_0592 0.42 -1.4 579,804 + +0.6 579,872 - pfkA Synpcc7942_0592 0.52 +1.9 579,873 - pfkA Synpcc7942_0592 0.52 +0.2 579,873 - pfkA Synpcc7942_0592 0.52 -3.0 579,902 + pfkA Synpcc7942_0592 0.54 +1.5 579,902 + pfkA Synpcc7942_0592 0.54 +1.2 579,910 - pfkA Synpcc7942_0592 0.55 -1.4 579,910 - pfkA Synpcc7942_0592 0.55 +1.0 579,910 - pfkA Synpcc7942_0592 0.55 -1.1 579,921 - pfkA Synpcc7942_0592 0.56 +0.4 579,940 - pfkA Synpcc7942_0592 0.58 -2.4 579,942 + pfkA Synpcc7942_0592 0.58 -0.7 579,961 - pfkA Synpcc7942_0592 0.60 +0.3 579,966 + pfkA Synpcc7942_0592 0.60 -1.4
Or see this region's nucleotide sequence