Experiment: Nalidixic 0.00390625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0459 and Synpcc7942_0460 are separated by 139 nucleotides Synpcc7942_0460 and Synpcc7942_0461 are separated by 96 nucleotides Synpcc7942_0461 and Synpcc7942_0462 are separated by 56 nucleotides Synpcc7942_0462 and Synpcc7942_0463 overlap by 1 nucleotides
Synpcc7942_0459: Synpcc7942_0459 - glutathione-dependent formaldehyde dehydrogenase, at 447,057 to 448,166
_0459
Synpcc7942_0460: Synpcc7942_0460 - putative acetyltransferase, at 448,306 to 448,779
_0460
Synpcc7942_0461: Synpcc7942_0461 - hypothetical protein, at 448,876 to 449,313
_0461
Synpcc7942_0462: Synpcc7942_0462 - hypothetical protein, at 449,370 to 449,957
_0462
Synpcc7942_0463: Synpcc7942_0463 - protein tyrosine phosphatase, at 449,957 to 450,448
_0463
Position (kb) 448
449
450 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 447.893 kb on + strand, within Synpcc7942_0459 at 447.911 kb on + strand, within Synpcc7942_0459 at 447.939 kb on + strand, within Synpcc7942_0459 at 447.939 kb on + strand, within Synpcc7942_0459 at 447.940 kb on + strand, within Synpcc7942_0459 at 447.963 kb on + strand, within Synpcc7942_0459 at 447.992 kb on - strand, within Synpcc7942_0459 at 448.028 kb on + strand, within Synpcc7942_0459 at 448.036 kb on - strand, within Synpcc7942_0459 at 448.036 kb on - strand, within Synpcc7942_0459 at 448.042 kb on + strand, within Synpcc7942_0459 at 448.050 kb on - strand, within Synpcc7942_0459 at 448.094 kb on - strand at 448.094 kb on - strand at 448.138 kb on + strand at 448.146 kb on - strand at 448.177 kb on - strand at 448.196 kb on + strand at 448.245 kb on + strand at 448.251 kb on + strand at 448.251 kb on + strand at 448.275 kb on - strand at 448.275 kb on - strand at 448.296 kb on - strand at 448.309 kb on + strand at 448.329 kb on + strand at 448.329 kb on + strand at 448.329 kb on + strand at 448.341 kb on + strand at 448.341 kb on + strand at 448.346 kb on + strand at 448.346 kb on + strand at 448.346 kb on + strand at 448.354 kb on - strand, within Synpcc7942_0460 at 448.414 kb on + strand, within Synpcc7942_0460 at 448.418 kb on + strand, within Synpcc7942_0460 at 448.436 kb on - strand, within Synpcc7942_0460 at 448.436 kb on - strand, within Synpcc7942_0460 at 448.443 kb on - strand, within Synpcc7942_0460 at 448.449 kb on - strand, within Synpcc7942_0460 at 448.483 kb on - strand, within Synpcc7942_0460 at 448.510 kb on + strand, within Synpcc7942_0460 at 448.511 kb on + strand, within Synpcc7942_0460 at 448.529 kb on - strand, within Synpcc7942_0460 at 448.552 kb on - strand, within Synpcc7942_0460 at 448.610 kb on - strand, within Synpcc7942_0460 at 448.669 kb on + strand, within Synpcc7942_0460 at 448.701 kb on + strand, within Synpcc7942_0460 at 448.712 kb on + strand, within Synpcc7942_0460 at 448.772 kb on - strand at 448.779 kb on - strand at 448.818 kb on - strand at 448.841 kb on - strand at 448.847 kb on + strand at 448.849 kb on + strand at 448.849 kb on + strand at 448.895 kb on + strand at 448.895 kb on + strand at 448.896 kb on + strand at 448.896 kb on + strand at 448.953 kb on - strand, within Synpcc7942_0461 at 448.953 kb on - strand, within Synpcc7942_0461 at 448.953 kb on - strand, within Synpcc7942_0461 at 448.965 kb on - strand, within Synpcc7942_0461 at 449.131 kb on + strand, within Synpcc7942_0461 at 449.139 kb on - strand, within Synpcc7942_0461 at 449.139 kb on - strand, within Synpcc7942_0461 at 449.139 kb on - strand, within Synpcc7942_0461 at 449.141 kb on + strand, within Synpcc7942_0461 at 449.176 kb on + strand, within Synpcc7942_0461 at 449.192 kb on + strand, within Synpcc7942_0461 at 449.192 kb on + strand, within Synpcc7942_0461 at 449.195 kb on - strand, within Synpcc7942_0461 at 449.200 kb on - strand, within Synpcc7942_0461 at 449.200 kb on - strand, within Synpcc7942_0461 at 449.200 kb on - strand, within Synpcc7942_0461 at 449.200 kb on - strand, within Synpcc7942_0461 at 449.200 kb on - strand, within Synpcc7942_0461 at 449.200 kb on - strand, within Synpcc7942_0461 at 449.200 kb on - strand, within Synpcc7942_0461 at 449.200 kb on - strand, within Synpcc7942_0461 at 449.225 kb on - strand, within Synpcc7942_0461 at 449.248 kb on + strand, within Synpcc7942_0461 at 449.250 kb on + strand, within Synpcc7942_0461 at 449.272 kb on + strand at 449.288 kb on + strand at 449.288 kb on + strand at 449.296 kb on - strand at 449.310 kb on + strand at 449.337 kb on + strand at 449.345 kb on - strand at 449.361 kb on + strand at 449.361 kb on - strand at 449.472 kb on + strand, within Synpcc7942_0462 at 449.480 kb on - strand, within Synpcc7942_0462 at 449.481 kb on + strand, within Synpcc7942_0462 at 449.499 kb on - strand, within Synpcc7942_0462 at 449.509 kb on + strand, within Synpcc7942_0462 at 449.509 kb on + strand, within Synpcc7942_0462 at 449.517 kb on - strand, within Synpcc7942_0462 at 449.519 kb on + strand, within Synpcc7942_0462 at 449.532 kb on - strand, within Synpcc7942_0462 at 449.534 kb on - strand, within Synpcc7942_0462 at 449.602 kb on + strand, within Synpcc7942_0462 at 449.602 kb on + strand, within Synpcc7942_0462 at 449.602 kb on + strand, within Synpcc7942_0462 at 449.610 kb on - strand, within Synpcc7942_0462 at 449.610 kb on - strand, within Synpcc7942_0462 at 449.617 kb on + strand, within Synpcc7942_0462 at 449.637 kb on + strand, within Synpcc7942_0462 at 449.637 kb on + strand, within Synpcc7942_0462 at 449.637 kb on + strand, within Synpcc7942_0462 at 449.637 kb on + strand, within Synpcc7942_0462 at 449.645 kb on - strand, within Synpcc7942_0462 at 449.645 kb on - strand, within Synpcc7942_0462 at 449.652 kb on + strand, within Synpcc7942_0462 at 449.664 kb on + strand, within Synpcc7942_0462 at 449.671 kb on + strand, within Synpcc7942_0462 at 449.672 kb on - strand, within Synpcc7942_0462 at 449.672 kb on - strand, within Synpcc7942_0462 at 449.683 kb on + strand, within Synpcc7942_0462 at 449.685 kb on + strand, within Synpcc7942_0462 at 449.731 kb on - strand, within Synpcc7942_0462 at 449.736 kb on + strand, within Synpcc7942_0462 at 449.805 kb on - strand, within Synpcc7942_0462 at 449.810 kb on - strand, within Synpcc7942_0462 at 449.876 kb on - strand, within Synpcc7942_0462 at 449.886 kb on + strand, within Synpcc7942_0462 at 449.886 kb on + strand, within Synpcc7942_0462 at 449.887 kb on + strand, within Synpcc7942_0462 at 449.894 kb on - strand at 449.900 kb on - strand at 449.967 kb on + strand at 449.967 kb on + strand at 449.967 kb on + strand at 449.975 kb on - strand at 449.975 kb on - strand at 449.975 kb on - strand at 449.975 kb on - strand at 449.981 kb on + strand at 450.048 kb on - strand, within Synpcc7942_0463 at 450.060 kb on + strand, within Synpcc7942_0463 at 450.068 kb on - strand, within Synpcc7942_0463 at 450.070 kb on - strand, within Synpcc7942_0463 at 450.131 kb on + strand, within Synpcc7942_0463 at 450.132 kb on - strand at 450.165 kb on - strand, within Synpcc7942_0463 at 450.189 kb on + strand, within Synpcc7942_0463 at 450.216 kb on - strand, within Synpcc7942_0463 at 450.237 kb on + strand, within Synpcc7942_0463 at 450.237 kb on + strand, within Synpcc7942_0463 at 450.245 kb on - strand, within Synpcc7942_0463 at 450.245 kb on - strand, within Synpcc7942_0463 at 450.245 kb on - strand, within Synpcc7942_0463 at 450.247 kb on + strand, within Synpcc7942_0463 at 450.250 kb on + strand, within Synpcc7942_0463
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.00390625 mg/ml remove 447,893 + Synpcc7942_0459 0.75 +0.5 447,911 + Synpcc7942_0459 0.77 -1.4 447,939 + Synpcc7942_0459 0.79 +0.6 447,939 + Synpcc7942_0459 0.79 -1.4 447,940 + Synpcc7942_0459 0.80 +1.1 447,963 + Synpcc7942_0459 0.82 -0.5 447,992 - Synpcc7942_0459 0.84 -1.4 448,028 + Synpcc7942_0459 0.87 -2.4 448,036 - Synpcc7942_0459 0.88 -1.4 448,036 - Synpcc7942_0459 0.88 -0.0 448,042 + Synpcc7942_0459 0.89 +0.4 448,050 - Synpcc7942_0459 0.89 -2.0 448,094 - -1.4 448,094 - +1.4 448,138 + +0.8 448,146 - +0.6 448,177 - -0.6 448,196 + -1.1 448,245 + -3.0 448,251 + +0.4 448,251 + -1.4 448,275 - -0.4 448,275 - +0.2 448,296 - -1.0 448,309 + +0.2 448,329 + -0.6 448,329 + -1.0 448,329 + +0.2 448,341 + +0.0 448,341 + -0.1 448,346 + +1.2 448,346 + +1.0 448,346 + +0.0 448,354 - Synpcc7942_0460 0.10 +1.0 448,414 + Synpcc7942_0460 0.23 +0.2 448,418 + Synpcc7942_0460 0.24 -0.1 448,436 - Synpcc7942_0460 0.27 +2.5 448,436 - Synpcc7942_0460 0.27 -0.4 448,443 - Synpcc7942_0460 0.29 +3.6 448,449 - Synpcc7942_0460 0.30 +2.2 448,483 - Synpcc7942_0460 0.37 -0.1 448,510 + Synpcc7942_0460 0.43 +1.4 448,511 + Synpcc7942_0460 0.43 -1.4 448,529 - Synpcc7942_0460 0.47 +1.3 448,552 - Synpcc7942_0460 0.52 +1.3 448,610 - Synpcc7942_0460 0.64 +0.4 448,669 + Synpcc7942_0460 0.77 +0.4 448,701 + Synpcc7942_0460 0.83 +1.3 448,712 + Synpcc7942_0460 0.86 -0.5 448,772 - +0.8 448,779 - +1.1 448,818 - +1.2 448,841 - -1.7 448,847 + +2.1 448,849 + +1.3 448,849 + +0.6 448,895 + +1.0 448,895 + +2.2 448,896 + -0.1 448,896 + -0.5 448,953 - Synpcc7942_0461 0.18 -0.5 448,953 - Synpcc7942_0461 0.18 +1.3 448,953 - Synpcc7942_0461 0.18 +1.4 448,965 - Synpcc7942_0461 0.20 +1.1 449,131 + Synpcc7942_0461 0.58 +1.6 449,139 - Synpcc7942_0461 0.60 +1.1 449,139 - Synpcc7942_0461 0.60 -0.2 449,139 - Synpcc7942_0461 0.60 -1.8 449,141 + Synpcc7942_0461 0.61 +1.4 449,176 + Synpcc7942_0461 0.68 -0.4 449,192 + Synpcc7942_0461 0.72 -2.1 449,192 + Synpcc7942_0461 0.72 +1.5 449,195 - Synpcc7942_0461 0.73 +2.0 449,200 - Synpcc7942_0461 0.74 +1.8 449,200 - Synpcc7942_0461 0.74 +1.4 449,200 - Synpcc7942_0461 0.74 +0.2 449,200 - Synpcc7942_0461 0.74 -0.4 449,200 - Synpcc7942_0461 0.74 +0.4 449,200 - Synpcc7942_0461 0.74 +1.8 449,200 - Synpcc7942_0461 0.74 +2.1 449,200 - Synpcc7942_0461 0.74 +0.1 449,225 - Synpcc7942_0461 0.80 -0.4 449,248 + Synpcc7942_0461 0.85 -2.0 449,250 + Synpcc7942_0461 0.85 +0.4 449,272 + -0.6 449,288 + -0.1 449,288 + -0.8 449,296 - -0.6 449,310 + +1.6 449,337 + +0.0 449,345 - +1.0 449,361 + +0.2 449,361 - -2.4 449,472 + Synpcc7942_0462 0.17 -0.0 449,480 - Synpcc7942_0462 0.19 +0.5 449,481 + Synpcc7942_0462 0.19 +0.2 449,499 - Synpcc7942_0462 0.22 +1.3 449,509 + Synpcc7942_0462 0.24 +1.0 449,509 + Synpcc7942_0462 0.24 +0.6 449,517 - Synpcc7942_0462 0.25 +2.2 449,519 + Synpcc7942_0462 0.25 +2.2 449,532 - Synpcc7942_0462 0.28 +2.6 449,534 - Synpcc7942_0462 0.28 -0.0 449,602 + Synpcc7942_0462 0.39 +1.4 449,602 + Synpcc7942_0462 0.39 -0.0 449,602 + Synpcc7942_0462 0.39 +1.1 449,610 - Synpcc7942_0462 0.41 -0.3 449,610 - Synpcc7942_0462 0.41 +1.0 449,617 + Synpcc7942_0462 0.42 -0.6 449,637 + Synpcc7942_0462 0.45 -3.4 449,637 + Synpcc7942_0462 0.45 +1.2 449,637 + Synpcc7942_0462 0.45 +1.4 449,637 + Synpcc7942_0462 0.45 +1.3 449,645 - Synpcc7942_0462 0.47 +1.4 449,645 - Synpcc7942_0462 0.47 +0.3 449,652 + Synpcc7942_0462 0.48 +1.7 449,664 + Synpcc7942_0462 0.50 -0.4 449,671 + Synpcc7942_0462 0.51 +2.1 449,672 - Synpcc7942_0462 0.51 +1.7 449,672 - Synpcc7942_0462 0.51 +0.4 449,683 + Synpcc7942_0462 0.53 +1.0 449,685 + Synpcc7942_0462 0.54 +1.1 449,731 - Synpcc7942_0462 0.61 +0.9 449,736 + Synpcc7942_0462 0.62 +0.4 449,805 - Synpcc7942_0462 0.74 -0.0 449,810 - Synpcc7942_0462 0.75 +0.3 449,876 - Synpcc7942_0462 0.86 -0.4 449,886 + Synpcc7942_0462 0.88 -2.0 449,886 + Synpcc7942_0462 0.88 +0.3 449,887 + Synpcc7942_0462 0.88 -0.3 449,894 - +1.2 449,900 - +1.6 449,967 + +1.2 449,967 + -0.2 449,967 + +0.4 449,975 - +0.4 449,975 - +1.7 449,975 - +0.2 449,975 - -0.2 449,981 + +1.1 450,048 - Synpcc7942_0463 0.18 +1.7 450,060 + Synpcc7942_0463 0.21 +0.6 450,068 - Synpcc7942_0463 0.23 +1.4 450,070 - Synpcc7942_0463 0.23 +0.7 450,131 + Synpcc7942_0463 0.35 +1.3 450,132 - +1.6 450,165 - Synpcc7942_0463 0.42 -1.2 450,189 + Synpcc7942_0463 0.47 +0.2 450,216 - Synpcc7942_0463 0.53 +1.5 450,237 + Synpcc7942_0463 0.57 -0.8 450,237 + Synpcc7942_0463 0.57 -0.0 450,245 - Synpcc7942_0463 0.59 -0.4 450,245 - Synpcc7942_0463 0.59 -0.8 450,245 - Synpcc7942_0463 0.59 +2.0 450,247 + Synpcc7942_0463 0.59 -0.4 450,250 + Synpcc7942_0463 0.60 +0.2
Or see this region's nucleotide sequence