Experiment: Nalidixic 0.00390625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt birA and Synpcc7942_0346 are separated by 45 nucleotides Synpcc7942_0346 and Synpcc7942_0347 are separated by 156 nucleotides Synpcc7942_0347 and recA are separated by 245 nucleotides
Synpcc7942_0345: birA - Biotin--acetyl-CoA-carboxylase ligase, at 338,536 to 339,306
birA
Synpcc7942_0346: Synpcc7942_0346 - Protein of unknown function DUF152, at 339,352 to 340,131
_0346
Synpcc7942_0347: Synpcc7942_0347 - hypothetical protein, at 340,288 to 340,452
_0347
Synpcc7942_0348: recA - recombinase A, at 340,698 to 341,768
recA
Position (kb) 340
341 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 339.336 kb on + strand at 339.344 kb on + strand at 339.371 kb on - strand at 339.532 kb on - strand, within Synpcc7942_0346 at 339.544 kb on + strand, within Synpcc7942_0346 at 339.600 kb on + strand, within Synpcc7942_0346 at 339.628 kb on + strand, within Synpcc7942_0346 at 339.653 kb on + strand, within Synpcc7942_0346 at 339.686 kb on + strand, within Synpcc7942_0346 at 339.689 kb on - strand, within Synpcc7942_0346 at 339.830 kb on - strand, within Synpcc7942_0346 at 339.830 kb on - strand, within Synpcc7942_0346 at 339.847 kb on + strand, within Synpcc7942_0346 at 339.937 kb on + strand, within Synpcc7942_0346 at 340.034 kb on - strand, within Synpcc7942_0346 at 340.095 kb on + strand at 340.140 kb on + strand at 340.196 kb on - strand at 340.222 kb on + strand at 340.222 kb on + strand at 340.222 kb on + strand at 340.222 kb on + strand at 340.222 kb on + strand at 340.230 kb on - strand at 340.230 kb on - strand at 340.230 kb on - strand at 340.344 kb on - strand, within Synpcc7942_0347 at 340.373 kb on + strand, within Synpcc7942_0347 at 340.373 kb on + strand, within Synpcc7942_0347 at 340.373 kb on + strand, within Synpcc7942_0347 at 340.381 kb on - strand, within Synpcc7942_0347 at 340.429 kb on + strand, within Synpcc7942_0347 at 340.447 kb on + strand at 340.492 kb on - strand at 340.492 kb on - strand at 340.531 kb on + strand at 340.531 kb on + strand at 340.539 kb on + strand at 340.539 kb on + strand at 340.539 kb on - strand at 340.578 kb on + strand at 340.589 kb on - strand at 340.591 kb on + strand at 340.591 kb on + strand at 340.591 kb on + strand at 340.591 kb on + strand at 340.591 kb on + strand at 340.591 kb on + strand at 340.591 kb on + strand at 340.591 kb on + strand at 340.591 kb on + strand at 340.591 kb on + strand at 340.591 kb on + strand at 340.591 kb on + strand at 340.591 kb on + strand at 340.591 kb on + strand at 340.591 kb on + strand at 340.591 kb on + strand at 340.591 kb on + strand at 340.591 kb on + strand at 340.599 kb on - strand at 340.599 kb on - strand at 340.599 kb on - strand at 340.599 kb on - strand at 340.599 kb on - strand at 340.599 kb on - strand at 340.599 kb on - strand at 340.599 kb on - strand at 340.599 kb on - strand at 340.599 kb on - strand at 340.599 kb on - strand at 340.599 kb on - strand at 340.599 kb on - strand at 340.599 kb on - strand at 340.599 kb on - strand at 340.603 kb on + strand at 340.606 kb on - strand at 340.610 kb on + strand at 340.610 kb on + strand at 340.610 kb on + strand at 340.611 kb on - strand at 340.618 kb on - strand at 340.696 kb on + strand at 340.720 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.00390625 mg/ml remove 339,336 + +0.2 339,344 + -0.3 339,371 - -1.3 339,532 - Synpcc7942_0346 0.23 -2.3 339,544 + Synpcc7942_0346 0.25 -1.3 339,600 + Synpcc7942_0346 0.32 -1.3 339,628 + Synpcc7942_0346 0.35 -1.3 339,653 + Synpcc7942_0346 0.39 -2.3 339,686 + Synpcc7942_0346 0.43 -3.7 339,689 - Synpcc7942_0346 0.43 -1.3 339,830 - Synpcc7942_0346 0.61 -2.3 339,830 - Synpcc7942_0346 0.61 -2.3 339,847 + Synpcc7942_0346 0.63 +0.2 339,937 + Synpcc7942_0346 0.75 -2.3 340,034 - Synpcc7942_0346 0.87 -2.9 340,095 + +0.7 340,140 + -0.7 340,196 - -1.9 340,222 + -1.9 340,222 + -0.3 340,222 + -2.3 340,222 + -2.9 340,222 + -2.3 340,230 - -0.7 340,230 - -2.3 340,230 - -1.9 340,344 - Synpcc7942_0347 0.34 -1.3 340,373 + Synpcc7942_0347 0.52 -1.9 340,373 + Synpcc7942_0347 0.52 -3.7 340,373 + Synpcc7942_0347 0.52 -1.3 340,381 - Synpcc7942_0347 0.56 -3.4 340,429 + Synpcc7942_0347 0.85 -4.1 340,447 + -2.3 340,492 - +0.1 340,492 - +0.4 340,531 + -0.3 340,531 + +0.7 340,539 + +1.6 340,539 + -0.6 340,539 - -2.3 340,578 + +1.3 340,589 - +0.3 340,591 + -1.3 340,591 + +0.7 340,591 + -0.5 340,591 + -0.7 340,591 + -2.3 340,591 + -1.3 340,591 + +1.6 340,591 + -0.7 340,591 + +1.8 340,591 + +1.8 340,591 + +1.8 340,591 + -0.9 340,591 + +1.9 340,591 + -0.7 340,591 + +0.3 340,591 + +1.4 340,591 + -1.3 340,591 + +1.0 340,599 - -0.1 340,599 - -1.3 340,599 - -1.3 340,599 - +0.3 340,599 - -0.3 340,599 - +2.8 340,599 - -1.1 340,599 - +1.0 340,599 - +0.3 340,599 - -0.7 340,599 - -0.9 340,599 - +0.4 340,599 - +1.1 340,599 - -0.3 340,599 - -1.3 340,603 + +2.6 340,606 - -1.3 340,610 + +0.1 340,610 + +1.6 340,610 + +0.3 340,611 - +1.3 340,618 - -1.3 340,696 + -1.3 340,720 - -0.3
Or see this region's nucleotide sequence