Experiment: Nalidixic 0.00390625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt atpC and petF are separated by 108 nucleotides petF and Synpcc7942_0339 are separated by 160 nucleotides Synpcc7942_0339 and Synpcc7942_0340 overlap by 4 nucleotides Synpcc7942_0340 and Synpcc7942_0341 overlap by 20 nucleotides
Synpcc7942_0337: atpC - F0F1 ATP synthase subunit gamma, at 332,458 to 333,408
atpC
Synpcc7942_0338: petF - Ferredoxin (2Fe-2S), at 333,517 to 333,834
petF
Synpcc7942_0339: Synpcc7942_0339 - hypothetical protein, at 333,995 to 335,074
_0339
Synpcc7942_0340: Synpcc7942_0340 - hypothetical protein, at 335,071 to 335,652
_0340
Synpcc7942_0341: Synpcc7942_0341 - hypothetical protein, at 335,633 to 336,205
_0341
Position (kb) 333
334
335
336 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 333.461 kb on - strand at 333.469 kb on - strand at 333.555 kb on + strand, within petF at 333.564 kb on + strand, within petF at 333.564 kb on - strand, within petF at 333.597 kb on - strand, within petF at 333.601 kb on + strand, within petF at 333.640 kb on + strand, within petF at 333.645 kb on + strand, within petF at 333.656 kb on - strand, within petF at 333.662 kb on - strand, within petF at 333.708 kb on + strand, within petF at 333.713 kb on + strand, within petF at 333.727 kb on + strand, within petF at 333.739 kb on + strand, within petF at 333.739 kb on + strand, within petF at 333.739 kb on + strand, within petF at 333.739 kb on + strand, within petF at 333.739 kb on + strand, within petF at 333.740 kb on + strand, within petF at 333.740 kb on - strand, within petF at 333.741 kb on - strand, within petF at 333.747 kb on - strand, within petF at 333.747 kb on - strand, within petF at 333.747 kb on - strand, within petF at 333.747 kb on - strand, within petF at 333.747 kb on - strand, within petF at 333.747 kb on - strand, within petF at 333.756 kb on - strand, within petF at 333.757 kb on - strand, within petF at 333.801 kb on + strand, within petF at 333.810 kb on - strand at 333.829 kb on + strand at 333.843 kb on + strand at 333.857 kb on + strand at 333.866 kb on - strand at 333.917 kb on - strand at 333.961 kb on + strand at 333.991 kb on + strand at 333.991 kb on + strand at 333.999 kb on - strand at 333.999 kb on - strand at 334.003 kb on - strand at 334.007 kb on + strand at 334.007 kb on + strand at 334.015 kb on - strand at 334.105 kb on - strand, within Synpcc7942_0339 at 334.153 kb on + strand, within Synpcc7942_0339 at 334.375 kb on + strand, within Synpcc7942_0339 at 334.429 kb on + strand, within Synpcc7942_0339 at 334.468 kb on + strand, within Synpcc7942_0339 at 334.547 kb on + strand, within Synpcc7942_0339 at 334.758 kb on + strand, within Synpcc7942_0339 at 334.765 kb on + strand, within Synpcc7942_0339 at 334.790 kb on + strand, within Synpcc7942_0339 at 334.821 kb on - strand, within Synpcc7942_0339 at 334.856 kb on + strand, within Synpcc7942_0339 at 334.891 kb on - strand, within Synpcc7942_0339 at 334.954 kb on + strand, within Synpcc7942_0339 at 334.971 kb on + strand at 335.037 kb on + strand at 335.046 kb on + strand at 335.103 kb on - strand at 335.127 kb on + strand at 335.127 kb on + strand at 335.138 kb on - strand, within Synpcc7942_0340 at 335.196 kb on + strand, within Synpcc7942_0340 at 335.223 kb on - strand, within Synpcc7942_0340 at 335.242 kb on + strand, within Synpcc7942_0340 at 335.249 kb on + strand, within Synpcc7942_0340 at 335.249 kb on + strand, within Synpcc7942_0340 at 335.255 kb on - strand, within Synpcc7942_0340 at 335.262 kb on - strand at 335.273 kb on + strand, within Synpcc7942_0340 at 335.281 kb on - strand, within Synpcc7942_0340 at 335.304 kb on - strand, within Synpcc7942_0340 at 335.334 kb on + strand, within Synpcc7942_0340 at 335.348 kb on - strand, within Synpcc7942_0340 at 335.355 kb on + strand, within Synpcc7942_0340 at 335.363 kb on - strand, within Synpcc7942_0340 at 335.365 kb on + strand, within Synpcc7942_0340 at 335.389 kb on + strand, within Synpcc7942_0340 at 335.392 kb on - strand, within Synpcc7942_0340 at 335.392 kb on - strand, within Synpcc7942_0340 at 335.425 kb on + strand, within Synpcc7942_0340 at 335.426 kb on - strand, within Synpcc7942_0340 at 335.433 kb on - strand, within Synpcc7942_0340 at 335.501 kb on + strand, within Synpcc7942_0340 at 335.501 kb on + strand, within Synpcc7942_0340 at 335.502 kb on - strand, within Synpcc7942_0340 at 335.507 kb on - strand, within Synpcc7942_0340 at 335.509 kb on - strand, within Synpcc7942_0340 at 335.602 kb on - strand at 335.602 kb on - strand at 335.602 kb on - strand at 335.626 kb on - strand at 335.660 kb on + strand at 335.770 kb on - strand, within Synpcc7942_0341 at 335.809 kb on + strand, within Synpcc7942_0341 at 335.928 kb on + strand, within Synpcc7942_0341 at 335.937 kb on - strand, within Synpcc7942_0341 at 335.961 kb on + strand, within Synpcc7942_0341 at 335.969 kb on - strand, within Synpcc7942_0341 at 335.980 kb on + strand, within Synpcc7942_0341 at 335.980 kb on + strand, within Synpcc7942_0341 at 335.988 kb on - strand, within Synpcc7942_0341 at 336.029 kb on - strand, within Synpcc7942_0341 at 336.032 kb on + strand, within Synpcc7942_0341 at 336.038 kb on + strand, within Synpcc7942_0341 at 336.041 kb on - strand, within Synpcc7942_0341 at 336.041 kb on - strand, within Synpcc7942_0341 at 336.041 kb on - strand, within Synpcc7942_0341
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.00390625 mg/ml remove 333,461 - -0.2 333,469 - +0.8 333,555 + petF Synpcc7942_0338 0.12 +2.9 333,564 + petF Synpcc7942_0338 0.15 -0.1 333,564 - petF Synpcc7942_0338 0.15 -0.0 333,597 - petF Synpcc7942_0338 0.25 -2.3 333,601 + petF Synpcc7942_0338 0.26 +0.3 333,640 + petF Synpcc7942_0338 0.39 -0.4 333,645 + petF Synpcc7942_0338 0.40 -0.6 333,656 - petF Synpcc7942_0338 0.44 +0.9 333,662 - petF Synpcc7942_0338 0.46 -0.0 333,708 + petF Synpcc7942_0338 0.60 -2.9 333,713 + petF Synpcc7942_0338 0.62 -0.5 333,727 + petF Synpcc7942_0338 0.66 +0.7 333,739 + petF Synpcc7942_0338 0.70 -1.3 333,739 + petF Synpcc7942_0338 0.70 +0.9 333,739 + petF Synpcc7942_0338 0.70 +0.7 333,739 + petF Synpcc7942_0338 0.70 +0.7 333,739 + petF Synpcc7942_0338 0.70 +2.2 333,740 + petF Synpcc7942_0338 0.70 -2.7 333,740 - petF Synpcc7942_0338 0.70 -1.9 333,741 - petF Synpcc7942_0338 0.70 +1.0 333,747 - petF Synpcc7942_0338 0.72 +1.0 333,747 - petF Synpcc7942_0338 0.72 +0.7 333,747 - petF Synpcc7942_0338 0.72 -1.3 333,747 - petF Synpcc7942_0338 0.72 -0.1 333,747 - petF Synpcc7942_0338 0.72 +0.5 333,747 - petF Synpcc7942_0338 0.72 -2.7 333,756 - petF Synpcc7942_0338 0.75 +0.8 333,757 - petF Synpcc7942_0338 0.75 -1.6 333,801 + petF Synpcc7942_0338 0.89 -1.9 333,810 - +1.3 333,829 + -3.3 333,843 + +0.9 333,857 + -2.9 333,866 - -0.3 333,917 - -0.7 333,961 + -1.9 333,991 + -0.5 333,991 + +0.3 333,999 - +0.6 333,999 - -1.3 334,003 - +1.0 334,007 + -0.6 334,007 + +0.5 334,015 - +1.0 334,105 - Synpcc7942_0339 0.10 -3.3 334,153 + Synpcc7942_0339 0.15 -1.3 334,375 + Synpcc7942_0339 0.35 -1.3 334,429 + Synpcc7942_0339 0.40 -0.3 334,468 + Synpcc7942_0339 0.44 -2.9 334,547 + Synpcc7942_0339 0.51 +0.3 334,758 + Synpcc7942_0339 0.71 -2.6 334,765 + Synpcc7942_0339 0.71 -1.3 334,790 + Synpcc7942_0339 0.74 -0.7 334,821 - Synpcc7942_0339 0.76 -2.1 334,856 + Synpcc7942_0339 0.80 -2.1 334,891 - Synpcc7942_0339 0.83 -2.3 334,954 + Synpcc7942_0339 0.89 -2.3 334,971 + -2.5 335,037 + -0.1 335,046 + +1.8 335,103 - -0.6 335,127 + -1.3 335,127 + -1.3 335,138 - Synpcc7942_0340 0.12 -1.3 335,196 + Synpcc7942_0340 0.21 +0.1 335,223 - Synpcc7942_0340 0.26 -1.1 335,242 + Synpcc7942_0340 0.29 -0.1 335,249 + Synpcc7942_0340 0.31 -0.6 335,249 + Synpcc7942_0340 0.31 -1.9 335,255 - Synpcc7942_0340 0.32 -0.9 335,262 - -1.3 335,273 + Synpcc7942_0340 0.35 -2.3 335,281 - Synpcc7942_0340 0.36 -1.3 335,304 - Synpcc7942_0340 0.40 -1.1 335,334 + Synpcc7942_0340 0.45 +1.5 335,348 - Synpcc7942_0340 0.48 +0.5 335,355 + Synpcc7942_0340 0.49 -2.1 335,363 - Synpcc7942_0340 0.50 +1.5 335,365 + Synpcc7942_0340 0.51 -1.3 335,389 + Synpcc7942_0340 0.55 -2.5 335,392 - Synpcc7942_0340 0.55 +1.7 335,392 - Synpcc7942_0340 0.55 -1.7 335,425 + Synpcc7942_0340 0.61 -0.3 335,426 - Synpcc7942_0340 0.61 -1.3 335,433 - Synpcc7942_0340 0.62 -2.3 335,501 + Synpcc7942_0340 0.74 +0.8 335,501 + Synpcc7942_0340 0.74 -0.4 335,502 - Synpcc7942_0340 0.74 -3.9 335,507 - Synpcc7942_0340 0.75 +0.3 335,509 - Synpcc7942_0340 0.75 -1.3 335,602 - +0.4 335,602 - -1.0 335,602 - -0.3 335,626 - -1.3 335,660 + +0.3 335,770 - Synpcc7942_0341 0.24 -0.7 335,809 + Synpcc7942_0341 0.31 -2.3 335,928 + Synpcc7942_0341 0.51 +0.3 335,937 - Synpcc7942_0341 0.53 +1.2 335,961 + Synpcc7942_0341 0.57 +0.6 335,969 - Synpcc7942_0341 0.59 +0.8 335,980 + Synpcc7942_0341 0.61 +1.7 335,980 + Synpcc7942_0341 0.61 +1.7 335,988 - Synpcc7942_0341 0.62 +0.0 336,029 - Synpcc7942_0341 0.69 -0.3 336,032 + Synpcc7942_0341 0.70 -0.5 336,038 + Synpcc7942_0341 0.71 -3.3 336,041 - Synpcc7942_0341 0.71 +1.3 336,041 - Synpcc7942_0341 0.71 +1.2 336,041 - Synpcc7942_0341 0.71 -1.7
Or see this region's nucleotide sequence