Experiment: Nalidixic 0.00390625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ligA and hoxE are separated by 124 nucleotides hoxE and hoxF overlap by 1 nucleotides
Synpcc7942_0277: ligA - NAD-dependent DNA ligase LigA, at 271,493 to 273,532
ligA
Synpcc7942_0278: hoxE - bidirectional hydrogenase complex protein HoxE, at 273,657 to 274,154
hoxE
Synpcc7942_0279: hoxF - NADH dehydrogenase (quinone), at 274,154 to 275,758
hoxF
Position (kb) 273
274
275 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 273.533 kb on + strand at 273.536 kb on - strand at 273.557 kb on - strand at 273.622 kb on + strand at 273.622 kb on + strand at 273.623 kb on - strand at 273.628 kb on - strand at 273.641 kb on - strand at 273.644 kb on - strand at 273.648 kb on + strand at 273.656 kb on - strand at 273.656 kb on - strand at 273.656 kb on - strand at 273.677 kb on + strand at 273.682 kb on + strand at 273.725 kb on - strand, within hoxE at 273.747 kb on - strand, within hoxE at 273.776 kb on + strand, within hoxE at 273.777 kb on + strand, within hoxE at 273.777 kb on + strand, within hoxE at 273.784 kb on - strand, within hoxE at 273.784 kb on - strand, within hoxE at 273.790 kb on - strand, within hoxE at 273.811 kb on + strand, within hoxE at 273.828 kb on + strand, within hoxE at 273.853 kb on - strand, within hoxE at 273.853 kb on - strand, within hoxE at 273.862 kb on + strand, within hoxE at 273.865 kb on + strand, within hoxE at 273.873 kb on - strand, within hoxE at 273.875 kb on + strand, within hoxE at 273.883 kb on - strand, within hoxE at 273.964 kb on + strand, within hoxE at 273.972 kb on - strand, within hoxE at 273.975 kb on + strand, within hoxE at 273.993 kb on + strand, within hoxE at 274.001 kb on - strand, within hoxE at 274.002 kb on + strand, within hoxE at 274.010 kb on - strand, within hoxE at 274.022 kb on + strand, within hoxE at 274.022 kb on + strand, within hoxE at 274.029 kb on + strand, within hoxE at 274.035 kb on - strand, within hoxE at 274.037 kb on + strand, within hoxE at 274.037 kb on - strand, within hoxE at 274.039 kb on + strand at 274.039 kb on + strand, within hoxE at 274.039 kb on + strand, within hoxE at 274.039 kb on + strand, within hoxE at 274.039 kb on + strand, within hoxE at 274.039 kb on + strand, within hoxE at 274.039 kb on + strand, within hoxE at 274.041 kb on + strand, within hoxE at 274.045 kb on - strand, within hoxE at 274.047 kb on - strand, within hoxE at 274.047 kb on - strand, within hoxE at 274.047 kb on - strand, within hoxE at 274.081 kb on - strand, within hoxE at 274.083 kb on - strand, within hoxE at 274.086 kb on + strand, within hoxE at 274.094 kb on - strand, within hoxE at 274.125 kb on - strand at 274.133 kb on - strand at 274.139 kb on + strand at 274.147 kb on - strand at 274.151 kb on + strand at 274.156 kb on + strand at 274.166 kb on + strand at 274.174 kb on - strand at 274.175 kb on + strand at 274.208 kb on - strand at 274.231 kb on + strand at 274.238 kb on + strand at 274.239 kb on - strand at 274.285 kb on - strand at 274.285 kb on - strand at 274.285 kb on - strand at 274.315 kb on + strand, within hoxF at 274.338 kb on + strand, within hoxF at 274.343 kb on + strand at 274.353 kb on - strand, within hoxF at 274.353 kb on - strand, within hoxF at 274.356 kb on - strand, within hoxF at 274.362 kb on + strand, within hoxF at 274.364 kb on + strand, within hoxF at 274.376 kb on + strand, within hoxF at 274.388 kb on + strand, within hoxF at 274.388 kb on + strand, within hoxF at 274.397 kb on + strand, within hoxF at 274.398 kb on - strand, within hoxF at 274.398 kb on - strand, within hoxF at 274.402 kb on + strand, within hoxF at 274.402 kb on + strand, within hoxF at 274.410 kb on - strand, within hoxF at 274.415 kb on - strand, within hoxF at 274.446 kb on - strand, within hoxF at 274.447 kb on - strand, within hoxF at 274.459 kb on - strand, within hoxF at 274.485 kb on - strand, within hoxF at 274.488 kb on + strand, within hoxF at 274.509 kb on - strand, within hoxF at 274.534 kb on - strand, within hoxF at 274.544 kb on - strand, within hoxF at 274.554 kb on - strand, within hoxF at 274.595 kb on + strand, within hoxF at 274.603 kb on - strand, within hoxF at 274.646 kb on - strand, within hoxF at 274.689 kb on - strand, within hoxF at 274.761 kb on + strand, within hoxF at 274.769 kb on - strand, within hoxF at 274.769 kb on - strand, within hoxF at 274.778 kb on + strand, within hoxF at 274.778 kb on + strand, within hoxF at 274.778 kb on + strand, within hoxF at 274.778 kb on + strand, within hoxF at 274.778 kb on + strand, within hoxF at 274.786 kb on - strand, within hoxF at 274.786 kb on - strand, within hoxF at 274.786 kb on - strand, within hoxF at 274.786 kb on - strand, within hoxF at 274.791 kb on + strand, within hoxF at 274.794 kb on + strand, within hoxF at 274.799 kb on - strand, within hoxF at 274.802 kb on + strand, within hoxF at 274.839 kb on + strand, within hoxF at 274.898 kb on + strand, within hoxF at 274.946 kb on + strand, within hoxF at 274.946 kb on + strand, within hoxF at 274.946 kb on + strand, within hoxF at 274.946 kb on + strand, within hoxF at 274.954 kb on - strand, within hoxF at 274.987 kb on - strand, within hoxF at 275.065 kb on - strand, within hoxF at 275.065 kb on - strand, within hoxF at 275.078 kb on - strand, within hoxF at 275.103 kb on + strand, within hoxF at 275.103 kb on + strand, within hoxF at 275.103 kb on + strand, within hoxF at 275.111 kb on - strand, within hoxF at 275.111 kb on - strand, within hoxF at 275.111 kb on - strand, within hoxF at 275.113 kb on + strand, within hoxF at 275.139 kb on + strand, within hoxF at 275.150 kb on + strand, within hoxF
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.00390625 mg/ml remove 273,533 + -1.1 273,536 - +0.3 273,557 - +1.0 273,622 + +0.7 273,622 + -0.3 273,623 - +0.7 273,628 - +1.8 273,641 - -0.3 273,644 - +0.8 273,648 + -0.3 273,656 - -0.6 273,656 - +0.7 273,656 - +3.0 273,677 + +1.7 273,682 + +1.3 273,725 - hoxE Synpcc7942_0278 0.14 +0.3 273,747 - hoxE Synpcc7942_0278 0.18 +0.8 273,776 + hoxE Synpcc7942_0278 0.24 +0.5 273,777 + hoxE Synpcc7942_0278 0.24 -0.6 273,777 + hoxE Synpcc7942_0278 0.24 +0.7 273,784 - hoxE Synpcc7942_0278 0.26 -0.3 273,784 - hoxE Synpcc7942_0278 0.26 +0.8 273,790 - hoxE Synpcc7942_0278 0.27 +1.0 273,811 + hoxE Synpcc7942_0278 0.31 -3.3 273,828 + hoxE Synpcc7942_0278 0.34 +0.5 273,853 - hoxE Synpcc7942_0278 0.39 +1.3 273,853 - hoxE Synpcc7942_0278 0.39 -2.3 273,862 + hoxE Synpcc7942_0278 0.41 +0.7 273,865 + hoxE Synpcc7942_0278 0.42 -1.3 273,873 - hoxE Synpcc7942_0278 0.43 +0.7 273,875 + hoxE Synpcc7942_0278 0.44 +1.5 273,883 - hoxE Synpcc7942_0278 0.45 +1.1 273,964 + hoxE Synpcc7942_0278 0.62 +1.1 273,972 - hoxE Synpcc7942_0278 0.63 -1.0 273,975 + hoxE Synpcc7942_0278 0.64 -1.9 273,993 + hoxE Synpcc7942_0278 0.67 +0.4 274,001 - hoxE Synpcc7942_0278 0.69 +0.5 274,002 + hoxE Synpcc7942_0278 0.69 +2.0 274,010 - hoxE Synpcc7942_0278 0.71 +0.9 274,022 + hoxE Synpcc7942_0278 0.73 +1.5 274,022 + hoxE Synpcc7942_0278 0.73 +0.4 274,029 + hoxE Synpcc7942_0278 0.75 +2.5 274,035 - hoxE Synpcc7942_0278 0.76 +0.3 274,037 + hoxE Synpcc7942_0278 0.76 +1.0 274,037 - hoxE Synpcc7942_0278 0.76 -0.3 274,039 + +0.3 274,039 + hoxE Synpcc7942_0278 0.77 -1.3 274,039 + hoxE Synpcc7942_0278 0.77 +0.8 274,039 + hoxE Synpcc7942_0278 0.77 +0.3 274,039 + hoxE Synpcc7942_0278 0.77 +2.1 274,039 + hoxE Synpcc7942_0278 0.77 +0.3 274,039 + hoxE Synpcc7942_0278 0.77 +3.6 274,041 + hoxE Synpcc7942_0278 0.77 +1.5 274,045 - hoxE Synpcc7942_0278 0.78 +0.9 274,047 - hoxE Synpcc7942_0278 0.78 +1.8 274,047 - hoxE Synpcc7942_0278 0.78 +2.4 274,047 - hoxE Synpcc7942_0278 0.78 +1.1 274,081 - hoxE Synpcc7942_0278 0.85 +0.4 274,083 - hoxE Synpcc7942_0278 0.86 +1.3 274,086 + hoxE Synpcc7942_0278 0.86 +1.8 274,094 - hoxE Synpcc7942_0278 0.88 +2.4 274,125 - -0.7 274,133 - +1.0 274,139 + +0.3 274,147 - +0.0 274,151 + +1.0 274,156 + +1.8 274,166 + +0.1 274,174 - +0.3 274,175 + -0.3 274,208 - +2.8 274,231 + +1.8 274,238 + -0.3 274,239 - +1.0 274,285 - -0.6 274,285 - -0.1 274,285 - -2.9 274,315 + hoxF Synpcc7942_0279 0.10 +2.1 274,338 + hoxF Synpcc7942_0279 0.11 +3.1 274,343 + -1.3 274,353 - hoxF Synpcc7942_0279 0.12 -0.7 274,353 - hoxF Synpcc7942_0279 0.12 -0.8 274,356 - hoxF Synpcc7942_0279 0.13 -1.3 274,362 + hoxF Synpcc7942_0279 0.13 +2.0 274,364 + hoxF Synpcc7942_0279 0.13 +0.5 274,376 + hoxF Synpcc7942_0279 0.14 +0.3 274,388 + hoxF Synpcc7942_0279 0.15 -0.3 274,388 + hoxF Synpcc7942_0279 0.15 -0.7 274,397 + hoxF Synpcc7942_0279 0.15 -0.3 274,398 - hoxF Synpcc7942_0279 0.15 +2.0 274,398 - hoxF Synpcc7942_0279 0.15 +0.7 274,402 + hoxF Synpcc7942_0279 0.15 +0.0 274,402 + hoxF Synpcc7942_0279 0.15 +2.4 274,410 - hoxF Synpcc7942_0279 0.16 +2.8 274,415 - hoxF Synpcc7942_0279 0.16 +0.3 274,446 - hoxF Synpcc7942_0279 0.18 +0.6 274,447 - hoxF Synpcc7942_0279 0.18 +1.0 274,459 - hoxF Synpcc7942_0279 0.19 +1.3 274,485 - hoxF Synpcc7942_0279 0.21 +1.9 274,488 + hoxF Synpcc7942_0279 0.21 +1.0 274,509 - hoxF Synpcc7942_0279 0.22 +0.3 274,534 - hoxF Synpcc7942_0279 0.24 -0.0 274,544 - hoxF Synpcc7942_0279 0.24 +0.3 274,554 - hoxF Synpcc7942_0279 0.25 +1.5 274,595 + hoxF Synpcc7942_0279 0.27 -1.3 274,603 - hoxF Synpcc7942_0279 0.28 -1.3 274,646 - hoxF Synpcc7942_0279 0.31 +1.6 274,689 - hoxF Synpcc7942_0279 0.33 -2.7 274,761 + hoxF Synpcc7942_0279 0.38 +1.6 274,769 - hoxF Synpcc7942_0279 0.38 +2.2 274,769 - hoxF Synpcc7942_0279 0.38 +2.5 274,778 + hoxF Synpcc7942_0279 0.39 +0.1 274,778 + hoxF Synpcc7942_0279 0.39 +1.5 274,778 + hoxF Synpcc7942_0279 0.39 +0.7 274,778 + hoxF Synpcc7942_0279 0.39 +1.5 274,778 + hoxF Synpcc7942_0279 0.39 +1.0 274,786 - hoxF Synpcc7942_0279 0.39 -3.1 274,786 - hoxF Synpcc7942_0279 0.39 +2.3 274,786 - hoxF Synpcc7942_0279 0.39 +1.0 274,786 - hoxF Synpcc7942_0279 0.39 -0.3 274,791 + hoxF Synpcc7942_0279 0.40 -1.0 274,794 + hoxF Synpcc7942_0279 0.40 +0.5 274,799 - hoxF Synpcc7942_0279 0.40 -0.7 274,802 + hoxF Synpcc7942_0279 0.40 +1.8 274,839 + hoxF Synpcc7942_0279 0.43 +1.7 274,898 + hoxF Synpcc7942_0279 0.46 -0.8 274,946 + hoxF Synpcc7942_0279 0.49 -0.7 274,946 + hoxF Synpcc7942_0279 0.49 -0.0 274,946 + hoxF Synpcc7942_0279 0.49 +2.1 274,946 + hoxF Synpcc7942_0279 0.49 -0.0 274,954 - hoxF Synpcc7942_0279 0.50 -0.7 274,987 - hoxF Synpcc7942_0279 0.52 +0.8 275,065 - hoxF Synpcc7942_0279 0.57 +2.4 275,065 - hoxF Synpcc7942_0279 0.57 -0.1 275,078 - hoxF Synpcc7942_0279 0.58 +1.5 275,103 + hoxF Synpcc7942_0279 0.59 +1.1 275,103 + hoxF Synpcc7942_0279 0.59 -2.3 275,103 + hoxF Synpcc7942_0279 0.59 +3.5 275,111 - hoxF Synpcc7942_0279 0.60 -0.3 275,111 - hoxF Synpcc7942_0279 0.60 -0.2 275,111 - hoxF Synpcc7942_0279 0.60 +0.1 275,113 + hoxF Synpcc7942_0279 0.60 +1.1 275,139 + hoxF Synpcc7942_0279 0.61 +0.3 275,150 + hoxF Synpcc7942_0279 0.62 -2.9
Or see this region's nucleotide sequence