Experiment: Treatment=Stationary_phase_water_1week; Collection=outgrowth_in_cpg
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS18950 and RS_RS18955 are separated by 27 nucleotides RS_RS18955 and RS_RS18960 are separated by 16 nucleotides RS_RS18960 and RS_RS18965 overlap by 4 nucleotides
RS_RS18950: RS_RS18950 - flagellar biosynthetic protein FliR, at 478,709 to 479,497
_RS18950
RS_RS18955: RS_RS18955 - flagellar biosynthetic protein FliQ, at 479,525 to 479,794
_RS18955
RS_RS18960: RS_RS18960 - flagellar biosynthetic protein FliP, at 479,811 to 480,560
_RS18960
RS_RS18965: RS_RS18965 - flagellar biosynthetic protein FliO, at 480,557 to 480,949
_RS18965
Position (kb) 479
480 Strain fitness (log2 ratio) -1
0
1 at 479.292 kb on + strand, within RS_RS18950 at 479.293 kb on - strand, within RS_RS18950 at 479.451 kb on + strand at 479.452 kb on - strand at 479.452 kb on - strand at 479.452 kb on - strand at 479.535 kb on + strand at 479.535 kb on + strand at 479.535 kb on + strand at 479.535 kb on + strand at 479.536 kb on - strand at 479.568 kb on + strand, within RS_RS18955 at 479.568 kb on + strand, within RS_RS18955 at 479.781 kb on + strand at 479.782 kb on - strand at 479.806 kb on + strand at 479.807 kb on - strand at 479.807 kb on - strand at 479.844 kb on + strand at 480.054 kb on + strand, within RS_RS18960 at 480.211 kb on + strand, within RS_RS18960 at 480.437 kb on - strand, within RS_RS18960
Per-strain Table
Position Strand Gene LocusTag Fraction Treatment=Stationary_phase_water_1week; Collection=outgrowth_in_cpg remove 479,292 + RS_RS18950 0.74 -0.0 479,293 - RS_RS18950 0.74 +0.3 479,451 + -0.2 479,452 - +1.6 479,452 - -0.0 479,452 - -0.1 479,535 + +0.2 479,535 + +0.3 479,535 + +1.1 479,535 + -0.3 479,536 - -0.1 479,568 + RS_RS18955 0.16 -0.0 479,568 + RS_RS18955 0.16 +0.2 479,781 + -0.6 479,782 - -0.2 479,806 + -0.6 479,807 - -0.0 479,807 - +0.4 479,844 + +0.3 480,054 + RS_RS18960 0.32 +0.1 480,211 + RS_RS18960 0.53 -0.1 480,437 - RS_RS18960 0.83 +0.6
Or see this region's nucleotide sequence