Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_5062

Experiment: KB with Benzalkonium Chloride 6.25 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Benzalkonium Chloride 6.25 ug/ml
6,004,738	+		Psyr_5061	0.46	+0.9
6,004,739	-		Psyr_5061	0.47	+3.8
6,004,739	-				-1.6
6,004,739	-		Psyr_5061	0.47	-0.6
6,004,739	-		Psyr_5061	0.47	+4.1
6,004,739	-		Psyr_5061	0.47	+4.3
6,005,048	+		Psyr_5061	0.68	+0.3
6,005,049	-		Psyr_5061	0.68	-0.4
6,005,220	-		Psyr_5061	0.81	-0.3
6,005,350	+		Psyr_5061	0.90	-1.2
6,005,350	+		Psyr_5061	0.90	+0.2
6,005,350	+		Psyr_5061	0.90	-0.9
6,005,350	+		Psyr_5061	0.90	-1.1
6,005,350	+		Psyr_5061	0.90	+1.7
6,005,350	+		Psyr_5061	0.90	+4.5
6,005,351	-		Psyr_5061	0.90	-0.3
6,005,351	-		Psyr_5061	0.90	+0.4
6,005,351	-		Psyr_5061	0.90	+0.2
6,005,351	-		Psyr_5061	0.90	+4.2
6,005,522	-				-0.5
6,005,529	+				+1.2
6,005,529	+				+4.7
6,005,529	+				+1.1
6,005,530	-				+0.1
6,005,530	-				+1.9
6,005,530	-				+0.2
6,005,530	-				+0.9
6,005,530	-				-1.8
6,005,558	-				-0.1
6,005,729	-				+3.2
6,005,824	+		Psyr_5062	0.18	+3.8
6,005,842	+		Psyr_5062	0.20	-1.0
6,005,983	+		Psyr_5062	0.34	+2.8
6,005,983	+		Psyr_5062	0.34	+3.4
6,005,983	+		Psyr_5062	0.34	+1.6
6,005,983	+		Psyr_5062	0.34	-0.8
6,005,983	+		Psyr_5062	0.34	+1.8
6,005,983	+		Psyr_5062	0.34	+4.7
6,005,983	+		Psyr_5062	0.34	+3.5
6,005,983	+		Psyr_5062	0.34	-1.8
6,005,983	+		Psyr_5062	0.34	+0.4
6,005,984	-		Psyr_5062	0.34	+0.2
6,005,984	-		Psyr_5062	0.34	-1.1
6,005,984	-		Psyr_5062	0.34	-0.2
6,005,984	-		Psyr_5062	0.34	+1.2
6,005,984	-		Psyr_5062	0.34	-1.7
6,005,984	-		Psyr_5062	0.34	+2.5
6,006,642	+				+2.2
6,006,642	+				+0.2
6,006,643	-				-0.2
6,006,643	-				+1.8
6,006,681	+				+1.8
6,006,681	+				-1.2
6,006,681	+				-3.0
6,006,682	-				-1.7
6,006,682	-				-1.8
6,006,682	-				-1.7
6,006,682	-				+2.6
6,006,755	-				-2.6
6,006,755	-				+3.8
6,006,758	+				-2.2
6,006,758	+				+3.4
6,006,758	+				-1.8
6,006,759	-				+3.2
6,006,759	-				+0.2
6,006,759	-				-0.1
6,006,759	-				+3.4
6,006,759	-				+0.5
6,006,759	-				-1.3
6,006,768	+				+3.2
6,006,769	-				-1.0
6,006,769	-				+4.3
6,006,769	-				+1.0
6,006,796	+				-0.7
6,006,796	+				-0.7
6,006,907	+				-1.3
6,006,907	+				+0.2
6,006,908	-				+0.2
6,006,908	-				-1.4
6,006,909	+				-0.1
6,006,909	+				-1.1
6,006,909	+				+3.0
6,006,910	-				-2.2
6,006,910	-				+0.2
6,006,911	+				-0.6
6,006,911	+				+0.2
6,006,911	+				+0.2
6,006,911	+				-0.1
6,006,911	+				+0.8
6,006,911	+				-0.0
6,006,911	+				+3.8
6,006,911	+				+4.7
6,006,912	-				-1.7
6,006,912	-				+0.4
6,006,912	-				-2.8
6,006,912	-				+1.0
6,006,912	-				+0.2
6,006,912	-				+0.2
6,006,912	-				-0.5
6,006,912	-				+3.8
6,006,916	-				+3.4
6,006,916	-				+0.4
6,006,933	+				+4.7
6,006,940	-				+0.9
6,006,940	-				+4.5
6,006,947	-				-1.8
6,006,965	+				+0.7
6,006,966	-				+0.2
6,006,970	+				-2.3
6,006,996	+				+0.6
6,006,996	+				+1.7
6,006,997	-				-1.4
6,007,000	+				+1.4
6,007,000	+				+1.2
6,007,000	+				-0.6
6,007,001	-				+2.2
6,007,001	-				-1.4
6,007,056	-		Psyr_5063	0.17	+2.5
6,007,218	+		Psyr_5063	0.69	+1.8
6,007,219	-		Psyr_5063	0.70	+1.5
6,007,219	-		Psyr_5063	0.70	+1.8
6,007,219	-		Psyr_5063	0.70	-1.6
6,007,219	-		Psyr_5063	0.70	+0.4
6,007,219	-		Psyr_5063	0.70	-1.2
6,007,260	+		Psyr_5063	0.83	+1.3
6,007,263	+		Psyr_5063	0.84	-0.4
6,007,263	+		Psyr_5063	0.84	+2.2
6,007,263	+		Psyr_5063	0.84	+0.6
6,007,263	+		Psyr_5063	0.84	-1.5
6,007,263	+		Psyr_5063	0.84	-1.7
6,007,263	+		Psyr_5063	0.84	-0.3
6,007,263	+		Psyr_5063	0.84	+0.8
6,007,263	+		Psyr_5063	0.84	-2.7
6,007,264	-		Psyr_5063	0.84	+3.0
6,007,264	-		Psyr_5063	0.84	+3.2
6,007,264	-		Psyr_5063	0.84	-3.4
6,007,264	-		Psyr_5063	0.84	+4.1
6,007,297	+				-0.9
6,007,297	+				+4.4
6,007,297	+				-0.6
6,007,298	-				+2.2
6,007,298	-				-1.5
6,007,325	+				+0.9
6,007,325	+				+2.8
6,007,325	+				+3.4
6,007,326	-				-1.8
6,007,326	-				-2.3
6,007,326	-				-4.8
6,007,572	+		Psyr_5064	0.19	-1.5
6,007,572	+		Psyr_5064	0.19	+4.4
6,007,572	+		Psyr_5064	0.19	+4.3
6,007,573	-		Psyr_5064	0.19	+0.6
6,007,573	-		Psyr_5064	0.19	-0.8