Experiment: KB with Benzalkonium Chloride 6.25 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_5028 and Psyr_5029 are separated by 63 nucleotides Psyr_5029 and Psyr_5030 are separated by 189 nucleotides Psyr_5030 and Psyr_5031 overlap by 1 nucleotides
Psyr_5028: Psyr_5028 - FAD-dependent pyridine nucleotide-disulfide oxidoreductase, at 5,967,835 to 5,968,983
_5028
Psyr_5029: Psyr_5029 - Rubredoxin-type Fe(Cys)4 protein, at 5,969,047 to 5,969,214
_5029
Psyr_5030: Psyr_5030 - chorismate lyase, at 5,969,404 to 5,969,964
_5030
Psyr_5031: Psyr_5031 - 4-hydroxybenzoate octaprenyltransferase, at 5,969,964 to 5,970,854
_5031
Position (kb) 5969
5970 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 5968.055 kb on + strand, within Psyr_5028 at 5968.056 kb on - strand, within Psyr_5028 at 5968.127 kb on + strand, within Psyr_5028 at 5968.127 kb on + strand, within Psyr_5028 at 5968.127 kb on + strand, within Psyr_5028 at 5968.127 kb on + strand, within Psyr_5028 at 5968.127 kb on + strand, within Psyr_5028 at 5968.128 kb on - strand, within Psyr_5028 at 5968.128 kb on - strand, within Psyr_5028 at 5968.128 kb on - strand, within Psyr_5028 at 5968.586 kb on + strand, within Psyr_5028 at 5968.587 kb on - strand, within Psyr_5028 at 5968.688 kb on + strand, within Psyr_5028 at 5968.688 kb on + strand, within Psyr_5028 at 5968.688 kb on + strand, within Psyr_5028 at 5968.688 kb on + strand, within Psyr_5028 at 5968.688 kb on + strand, within Psyr_5028 at 5968.688 kb on + strand, within Psyr_5028 at 5968.688 kb on + strand, within Psyr_5028 at 5968.688 kb on + strand, within Psyr_5028 at 5968.689 kb on - strand, within Psyr_5028 at 5968.689 kb on - strand, within Psyr_5028 at 5968.689 kb on - strand, within Psyr_5028 at 5968.689 kb on - strand, within Psyr_5028 at 5968.689 kb on - strand, within Psyr_5028 at 5968.689 kb on - strand, within Psyr_5028 at 5968.689 kb on - strand, within Psyr_5028 at 5968.689 kb on - strand, within Psyr_5028 at 5968.689 kb on - strand, within Psyr_5028 at 5968.689 kb on - strand, within Psyr_5028 at 5968.862 kb on + strand, within Psyr_5028 at 5968.863 kb on - strand, within Psyr_5028 at 5968.863 kb on - strand, within Psyr_5028 at 5968.891 kb on + strand at 5968.892 kb on - strand at 5968.938 kb on + strand at 5968.938 kb on + strand at 5968.939 kb on - strand at 5968.940 kb on + strand at 5968.941 kb on - strand at 5968.994 kb on + strand at 5969.177 kb on + strand, within Psyr_5029 at 5969.177 kb on + strand, within Psyr_5029 at 5969.178 kb on - strand, within Psyr_5029 at 5969.178 kb on - strand, within Psyr_5029 at 5969.178 kb on - strand, within Psyr_5029 at 5969.231 kb on + strand at 5969.244 kb on - strand at 5969.248 kb on + strand at 5969.284 kb on + strand at 5969.284 kb on + strand at 5969.284 kb on + strand at 5969.285 kb on - strand at 5969.285 kb on - strand at 5969.285 kb on - strand at 5969.318 kb on + strand at 5969.318 kb on + strand at 5969.318 kb on + strand at 5969.318 kb on + strand at 5969.319 kb on - strand at 5969.365 kb on + strand at 5969.365 kb on + strand at 5969.400 kb on + strand at 5969.650 kb on + strand, within Psyr_5030 at 5969.650 kb on + strand, within Psyr_5030 at 5969.650 kb on + strand, within Psyr_5030 at 5969.650 kb on + strand, within Psyr_5030 at 5969.650 kb on + strand, within Psyr_5030 at 5969.650 kb on + strand, within Psyr_5030 at 5969.651 kb on - strand, within Psyr_5030 at 5969.967 kb on + strand at 5969.967 kb on + strand at 5969.967 kb on + strand at 5969.967 kb on + strand at 5969.967 kb on + strand at 5969.967 kb on + strand at 5969.967 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml remove 5,968,055 + Psyr_5028 0.19 -0.1 5,968,056 - Psyr_5028 0.19 +0.2 5,968,127 + Psyr_5028 0.25 +0.8 5,968,127 + Psyr_5028 0.25 +4.3 5,968,127 + Psyr_5028 0.25 +3.2 5,968,127 + Psyr_5028 0.25 +2.2 5,968,127 + Psyr_5028 0.25 +1.0 5,968,128 - Psyr_5028 0.26 +2.8 5,968,128 - Psyr_5028 0.26 -0.0 5,968,128 - Psyr_5028 0.26 +0.1 5,968,586 + Psyr_5028 0.65 -0.6 5,968,587 - Psyr_5028 0.65 -0.6 5,968,688 + Psyr_5028 0.74 -2.9 5,968,688 + Psyr_5028 0.74 -1.5 5,968,688 + Psyr_5028 0.74 +0.9 5,968,688 + Psyr_5028 0.74 -2.4 5,968,688 + Psyr_5028 0.74 -1.0 5,968,688 + Psyr_5028 0.74 +0.2 5,968,688 + Psyr_5028 0.74 -1.7 5,968,688 + Psyr_5028 0.74 -0.2 5,968,689 - Psyr_5028 0.74 -0.6 5,968,689 - Psyr_5028 0.74 -0.9 5,968,689 - Psyr_5028 0.74 -3.5 5,968,689 - Psyr_5028 0.74 +1.2 5,968,689 - Psyr_5028 0.74 -1.6 5,968,689 - Psyr_5028 0.74 +1.8 5,968,689 - Psyr_5028 0.74 -0.7 5,968,689 - Psyr_5028 0.74 +1.4 5,968,689 - Psyr_5028 0.74 -0.2 5,968,689 - Psyr_5028 0.74 +0.2 5,968,862 + Psyr_5028 0.89 -1.5 5,968,863 - Psyr_5028 0.89 +3.5 5,968,863 - Psyr_5028 0.89 -0.6 5,968,891 + -0.5 5,968,892 - -1.7 5,968,938 + -0.5 5,968,938 + +0.8 5,968,939 - +0.7 5,968,940 + -0.5 5,968,941 - -1.1 5,968,994 + +3.2 5,969,177 + Psyr_5029 0.77 +3.0 5,969,177 + Psyr_5029 0.77 -2.6 5,969,178 - Psyr_5029 0.78 +0.2 5,969,178 - Psyr_5029 0.78 -4.0 5,969,178 - Psyr_5029 0.78 +2.5 5,969,231 + -1.0 5,969,244 - +0.8 5,969,248 + +0.2 5,969,284 + -1.5 5,969,284 + -2.4 5,969,284 + +3.5 5,969,285 - +4.3 5,969,285 - +0.9 5,969,285 - +0.1 5,969,318 + -0.2 5,969,318 + -2.2 5,969,318 + -1.5 5,969,318 + -1.1 5,969,319 - +0.6 5,969,365 + +0.4 5,969,365 + +3.9 5,969,400 + -0.3 5,969,650 + Psyr_5030 0.44 +0.4 5,969,650 + Psyr_5030 0.44 +3.2 5,969,650 + Psyr_5030 0.44 +2.1 5,969,650 + Psyr_5030 0.44 -0.4 5,969,650 + Psyr_5030 0.44 +3.0 5,969,650 + Psyr_5030 0.44 +2.8 5,969,651 - Psyr_5030 0.44 -1.7 5,969,967 + +3.0 5,969,967 + -0.3 5,969,967 + -1.3 5,969,967 + -0.1 5,969,967 + -1.1 5,969,967 + -1.6 5,969,967 + -4.4
Or see this region's nucleotide sequence