Experiment: KB with Benzalkonium Chloride 6.25 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_5014 and Psyr_5015 are separated by 81 nucleotides Psyr_5015 and Psyr_5016 are separated by 419 nucleotides
Psyr_5014: Psyr_5014 - Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region:Acyl-CoA dehydrogenase, N-terminal, at 5,955,010 to 5,956,191
_5014
Psyr_5015: Psyr_5015 - transcriptional regulator, LysR family, at 5,956,273 to 5,957,259
_5015
Psyr_5016: Psyr_5016 - Alanine dehydrogenase/PNT, C-terminal:Alanine dehydrogenase/PNT, N-terminal, at 5,957,679 to 5,958,800
_5016
Position (kb) 5956
5957
5958 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 5955.374 kb on + strand, within Psyr_5014 at 5955.374 kb on + strand, within Psyr_5014 at 5955.374 kb on + strand, within Psyr_5014 at 5955.375 kb on - strand, within Psyr_5014 at 5955.375 kb on - strand, within Psyr_5014 at 5955.375 kb on - strand, within Psyr_5014 at 5955.649 kb on + strand, within Psyr_5014 at 5955.649 kb on + strand, within Psyr_5014 at 5955.650 kb on - strand, within Psyr_5014 at 5955.650 kb on - strand, within Psyr_5014 at 5955.650 kb on - strand, within Psyr_5014 at 5955.821 kb on + strand, within Psyr_5014 at 5955.821 kb on + strand, within Psyr_5014 at 5955.821 kb on + strand, within Psyr_5014 at 5955.821 kb on + strand, within Psyr_5014 at 5955.821 kb on + strand, within Psyr_5014 at 5955.822 kb on - strand, within Psyr_5014 at 5955.822 kb on - strand, within Psyr_5014 at 5955.822 kb on - strand, within Psyr_5014 at 5955.822 kb on - strand, within Psyr_5014 at 5955.953 kb on + strand, within Psyr_5014 at 5955.953 kb on + strand, within Psyr_5014 at 5955.953 kb on + strand, within Psyr_5014 at 5955.953 kb on + strand, within Psyr_5014 at 5955.953 kb on + strand, within Psyr_5014 at 5955.953 kb on + strand, within Psyr_5014 at 5955.954 kb on - strand, within Psyr_5014 at 5955.954 kb on - strand, within Psyr_5014 at 5955.954 kb on - strand, within Psyr_5014 at 5955.954 kb on - strand, within Psyr_5014 at 5956.231 kb on + strand at 5956.232 kb on - strand at 5956.232 kb on - strand at 5956.232 kb on - strand at 5956.266 kb on - strand at 5956.359 kb on - strand at 5956.549 kb on + strand, within Psyr_5015 at 5956.549 kb on + strand, within Psyr_5015 at 5956.549 kb on + strand, within Psyr_5015 at 5956.549 kb on + strand, within Psyr_5015 at 5956.549 kb on + strand, within Psyr_5015 at 5956.549 kb on + strand, within Psyr_5015 at 5956.550 kb on - strand, within Psyr_5015 at 5956.550 kb on - strand, within Psyr_5015 at 5956.550 kb on - strand, within Psyr_5015 at 5956.550 kb on - strand, within Psyr_5015 at 5956.551 kb on + strand, within Psyr_5015 at 5956.551 kb on + strand, within Psyr_5015 at 5956.551 kb on + strand, within Psyr_5015 at 5956.552 kb on - strand, within Psyr_5015 at 5956.780 kb on + strand, within Psyr_5015 at 5956.780 kb on + strand, within Psyr_5015 at 5956.781 kb on - strand, within Psyr_5015 at 5956.781 kb on - strand, within Psyr_5015 at 5956.781 kb on - strand, within Psyr_5015 at 5956.781 kb on - strand, within Psyr_5015 at 5956.976 kb on + strand, within Psyr_5015 at 5957.002 kb on + strand, within Psyr_5015 at 5957.002 kb on + strand, within Psyr_5015 at 5957.136 kb on + strand, within Psyr_5015 at 5957.142 kb on + strand, within Psyr_5015 at 5957.149 kb on + strand, within Psyr_5015 at 5957.149 kb on + strand, within Psyr_5015 at 5957.149 kb on + strand, within Psyr_5015 at 5957.149 kb on + strand, within Psyr_5015 at 5957.150 kb on - strand, within Psyr_5015 at 5957.150 kb on - strand, within Psyr_5015 at 5957.150 kb on - strand, within Psyr_5015 at 5957.150 kb on - strand, within Psyr_5015 at 5957.150 kb on - strand, within Psyr_5015 at 5957.152 kb on + strand, within Psyr_5015 at 5957.152 kb on + strand, within Psyr_5015 at 5957.152 kb on + strand, within Psyr_5015 at 5957.152 kb on + strand, within Psyr_5015 at 5957.152 kb on + strand, within Psyr_5015 at 5957.152 kb on + strand, within Psyr_5015 at 5957.152 kb on + strand, within Psyr_5015 at 5957.153 kb on - strand, within Psyr_5015 at 5957.273 kb on + strand at 5957.300 kb on + strand at 5957.301 kb on - strand at 5957.301 kb on - strand at 5957.301 kb on - strand at 5957.301 kb on - strand at 5957.301 kb on - strand at 5957.302 kb on + strand at 5957.303 kb on - strand at 5957.309 kb on - strand at 5957.309 kb on - strand at 5957.362 kb on - strand at 5957.365 kb on + strand at 5957.366 kb on - strand at 5957.421 kb on - strand at 5957.421 kb on - strand at 5957.443 kb on + strand at 5957.464 kb on + strand at 5957.493 kb on + strand at 5957.494 kb on - strand at 5957.494 kb on - strand at 5957.504 kb on - strand at 5957.513 kb on - strand at 5957.522 kb on - strand at 5957.541 kb on + strand at 5957.542 kb on - strand at 5957.629 kb on - strand at 5957.641 kb on + strand at 5957.641 kb on + strand at 5957.641 kb on + strand at 5957.642 kb on - strand at 5957.642 kb on - strand at 5957.642 kb on - strand at 5957.645 kb on + strand at 5957.645 kb on + strand at 5957.645 kb on + strand at 5957.645 kb on + strand at 5957.645 kb on + strand at 5957.645 kb on + strand at 5957.645 kb on + strand at 5957.646 kb on - strand at 5957.646 kb on - strand at 5957.646 kb on - strand at 5957.646 kb on - strand at 5957.646 kb on - strand at 5957.646 kb on - strand at 5957.646 kb on - strand at 5957.646 kb on - strand at 5957.646 kb on - strand at 5957.646 kb on - strand at 5957.646 kb on - strand at 5957.655 kb on - strand at 5957.726 kb on - strand at 5957.826 kb on + strand, within Psyr_5016 at 5957.827 kb on - strand, within Psyr_5016 at 5957.827 kb on - strand, within Psyr_5016 at 5957.868 kb on + strand, within Psyr_5016 at 5957.868 kb on + strand, within Psyr_5016 at 5957.868 kb on + strand, within Psyr_5016 at 5957.868 kb on + strand, within Psyr_5016 at 5957.868 kb on + strand, within Psyr_5016 at 5957.868 kb on + strand, within Psyr_5016 at 5957.868 kb on + strand, within Psyr_5016 at 5957.868 kb on + strand, within Psyr_5016 at 5957.868 kb on + strand, within Psyr_5016 at 5957.869 kb on - strand, within Psyr_5016 at 5957.869 kb on - strand, within Psyr_5016 at 5957.869 kb on - strand, within Psyr_5016 at 5957.869 kb on - strand, within Psyr_5016 at 5958.090 kb on + strand, within Psyr_5016 at 5958.091 kb on - strand, within Psyr_5016 at 5958.247 kb on + strand, within Psyr_5016 at 5958.247 kb on + strand, within Psyr_5016 at 5958.247 kb on + strand, within Psyr_5016 at 5958.247 kb on + strand, within Psyr_5016 at 5958.248 kb on - strand, within Psyr_5016 at 5958.248 kb on - strand, within Psyr_5016
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml remove 5,955,374 + Psyr_5014 0.31 -0.6 5,955,374 + Psyr_5014 0.31 +0.1 5,955,374 + Psyr_5014 0.31 +1.0 5,955,375 - Psyr_5014 0.31 +0.2 5,955,375 - Psyr_5014 0.31 -0.3 5,955,375 - Psyr_5014 0.31 +0.7 5,955,649 + Psyr_5014 0.54 -0.6 5,955,649 + Psyr_5014 0.54 +1.7 5,955,650 - Psyr_5014 0.54 -0.8 5,955,650 - Psyr_5014 0.54 +4.0 5,955,650 - Psyr_5014 0.54 -1.9 5,955,821 + Psyr_5014 0.69 +3.9 5,955,821 + Psyr_5014 0.69 -2.1 5,955,821 + Psyr_5014 0.69 -3.4 5,955,821 + Psyr_5014 0.69 +1.5 5,955,821 + Psyr_5014 0.69 -5.5 5,955,822 - Psyr_5014 0.69 +1.3 5,955,822 - Psyr_5014 0.69 -0.2 5,955,822 - Psyr_5014 0.69 +4.0 5,955,822 - Psyr_5014 0.69 -0.3 5,955,953 + Psyr_5014 0.80 +0.1 5,955,953 + Psyr_5014 0.80 -0.4 5,955,953 + Psyr_5014 0.80 -0.4 5,955,953 + Psyr_5014 0.80 -0.5 5,955,953 + Psyr_5014 0.80 +0.2 5,955,953 + Psyr_5014 0.80 +0.3 5,955,954 - Psyr_5014 0.80 +1.8 5,955,954 - Psyr_5014 0.80 +0.8 5,955,954 - Psyr_5014 0.80 +0.5 5,955,954 - Psyr_5014 0.80 -1.3 5,956,231 + +0.2 5,956,232 - -2.7 5,956,232 - -1.0 5,956,232 - +1.2 5,956,266 - -0.8 5,956,359 - +3.8 5,956,549 + Psyr_5015 0.28 -1.6 5,956,549 + Psyr_5015 0.28 +0.4 5,956,549 + Psyr_5015 0.28 -3.3 5,956,549 + Psyr_5015 0.28 +0.4 5,956,549 + Psyr_5015 0.28 -1.6 5,956,549 + Psyr_5015 0.28 +2.1 5,956,550 - Psyr_5015 0.28 +1.5 5,956,550 - Psyr_5015 0.28 +0.1 5,956,550 - Psyr_5015 0.28 -0.9 5,956,550 - Psyr_5015 0.28 +0.6 5,956,551 + Psyr_5015 0.28 -2.3 5,956,551 + Psyr_5015 0.28 -1.5 5,956,551 + Psyr_5015 0.28 +1.5 5,956,552 - Psyr_5015 0.28 +4.4 5,956,780 + Psyr_5015 0.51 -2.1 5,956,780 + Psyr_5015 0.51 -1.5 5,956,781 - Psyr_5015 0.51 +4.1 5,956,781 - Psyr_5015 0.51 +2.0 5,956,781 - Psyr_5015 0.51 +2.5 5,956,781 - Psyr_5015 0.51 +0.5 5,956,976 + Psyr_5015 0.71 +2.5 5,957,002 + Psyr_5015 0.74 +0.3 5,957,002 + Psyr_5015 0.74 +3.5 5,957,136 + Psyr_5015 0.87 +1.8 5,957,142 + Psyr_5015 0.88 +3.5 5,957,149 + Psyr_5015 0.89 +0.2 5,957,149 + Psyr_5015 0.89 -1.8 5,957,149 + Psyr_5015 0.89 -0.5 5,957,149 + Psyr_5015 0.89 -1.1 5,957,150 - Psyr_5015 0.89 +0.4 5,957,150 - Psyr_5015 0.89 +3.5 5,957,150 - Psyr_5015 0.89 +1.8 5,957,150 - Psyr_5015 0.89 -0.3 5,957,150 - Psyr_5015 0.89 -1.2 5,957,152 + Psyr_5015 0.89 -2.0 5,957,152 + Psyr_5015 0.89 +3.5 5,957,152 + Psyr_5015 0.89 +0.2 5,957,152 + Psyr_5015 0.89 -0.0 5,957,152 + Psyr_5015 0.89 -1.2 5,957,152 + Psyr_5015 0.89 -2.3 5,957,152 + Psyr_5015 0.89 +2.2 5,957,153 - Psyr_5015 0.89 -0.9 5,957,273 + -0.6 5,957,300 + -0.7 5,957,301 - +3.0 5,957,301 - +3.8 5,957,301 - -0.7 5,957,301 - -0.4 5,957,301 - -1.4 5,957,302 + +1.2 5,957,303 - -2.3 5,957,309 - -2.1 5,957,309 - +4.7 5,957,362 - +0.2 5,957,365 + -0.9 5,957,366 - +3.5 5,957,421 - +2.8 5,957,421 - +0.2 5,957,443 + +0.2 5,957,464 + -0.2 5,957,493 + -0.1 5,957,494 - +0.2 5,957,494 - +3.4 5,957,504 - -1.4 5,957,513 - -1.8 5,957,522 - +2.2 5,957,541 + +0.7 5,957,542 - +4.5 5,957,629 - +0.8 5,957,641 + -2.6 5,957,641 + -3.1 5,957,641 + -2.2 5,957,642 - +3.2 5,957,642 - +1.8 5,957,642 - -1.0 5,957,645 + -2.0 5,957,645 + +1.8 5,957,645 + +0.2 5,957,645 + -0.9 5,957,645 + -1.2 5,957,645 + +2.3 5,957,645 + +2.5 5,957,646 - -0.9 5,957,646 - +0.2 5,957,646 - -2.1 5,957,646 - -0.1 5,957,646 - +4.3 5,957,646 - -1.8 5,957,646 - +0.6 5,957,646 - +3.0 5,957,646 - -1.8 5,957,646 - -0.7 5,957,646 - -1.2 5,957,655 - +3.2 5,957,726 - -1.4 5,957,826 + Psyr_5016 0.13 +1.5 5,957,827 - Psyr_5016 0.13 +0.1 5,957,827 - Psyr_5016 0.13 +0.2 5,957,868 + Psyr_5016 0.17 -2.1 5,957,868 + Psyr_5016 0.17 -1.7 5,957,868 + Psyr_5016 0.17 -2.1 5,957,868 + Psyr_5016 0.17 -0.0 5,957,868 + Psyr_5016 0.17 -1.5 5,957,868 + Psyr_5016 0.17 +0.9 5,957,868 + Psyr_5016 0.17 -2.1 5,957,868 + Psyr_5016 0.17 -0.9 5,957,868 + Psyr_5016 0.17 +1.5 5,957,869 - Psyr_5016 0.17 +3.9 5,957,869 - Psyr_5016 0.17 -1.5 5,957,869 - Psyr_5016 0.17 +3.0 5,957,869 - Psyr_5016 0.17 +2.8 5,958,090 + Psyr_5016 0.37 -0.2 5,958,091 - Psyr_5016 0.37 -2.5 5,958,247 + Psyr_5016 0.51 +1.8 5,958,247 + Psyr_5016 0.51 +1.0 5,958,247 + Psyr_5016 0.51 -1.4 5,958,247 + Psyr_5016 0.51 +2.8 5,958,248 - Psyr_5016 0.51 -2.4 5,958,248 - Psyr_5016 0.51 -1.5
Or see this region's nucleotide sequence