Experiment: KB with Benzalkonium Chloride 6.25 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4994 and Psyr_4995 are separated by 30 nucleotides Psyr_4995 and Psyr_4996 are separated by 225 nucleotides Psyr_4996 and Psyr_4997 are separated by 391 nucleotides
Psyr_4994: Psyr_4994 - rhs-related protein, at 5,924,150 to 5,924,563
_4994
Psyr_4995: Psyr_4995 - RHS protein, at 5,924,594 to 5,925,109
_4995
Psyr_4996: Psyr_4996 - hypothetical protein, at 5,925,335 to 5,925,952
_4996
Psyr_4997: Psyr_4997 - YD repeat protein, at 5,926,344 to 5,928,011
_4997
Position (kb) 5925
5926 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 5924.437 kb on + strand, within Psyr_4994 at 5924.633 kb on + strand at 5924.633 kb on + strand at 5924.633 kb on + strand at 5924.633 kb on + strand at 5924.633 kb on + strand at 5924.848 kb on + strand, within Psyr_4995 at 5924.991 kb on + strand, within Psyr_4995 at 5925.007 kb on + strand, within Psyr_4995 at 5925.012 kb on + strand, within Psyr_4995 at 5925.080 kb on + strand at 5925.080 kb on + strand at 5925.081 kb on - strand at 5925.088 kb on - strand at 5925.091 kb on + strand at 5925.092 kb on - strand at 5925.174 kb on + strand at 5925.175 kb on - strand at 5925.178 kb on - strand at 5925.210 kb on + strand at 5925.220 kb on - strand at 5925.226 kb on - strand at 5925.252 kb on + strand at 5925.253 kb on - strand at 5925.253 kb on - strand at 5925.394 kb on - strand at 5925.482 kb on + strand, within Psyr_4996 at 5925.506 kb on - strand, within Psyr_4996 at 5925.535 kb on + strand, within Psyr_4996 at 5925.536 kb on - strand, within Psyr_4996 at 5925.536 kb on - strand, within Psyr_4996 at 5925.570 kb on - strand, within Psyr_4996 at 5925.570 kb on - strand, within Psyr_4996 at 5925.651 kb on - strand, within Psyr_4996 at 5925.660 kb on + strand, within Psyr_4996 at 5925.660 kb on + strand, within Psyr_4996 at 5925.660 kb on + strand, within Psyr_4996 at 5925.660 kb on + strand, within Psyr_4996 at 5925.660 kb on + strand, within Psyr_4996 at 5925.660 kb on + strand, within Psyr_4996 at 5925.660 kb on + strand, within Psyr_4996 at 5925.660 kb on + strand, within Psyr_4996 at 5925.660 kb on + strand, within Psyr_4996 at 5925.661 kb on - strand, within Psyr_4996 at 5925.661 kb on - strand, within Psyr_4996 at 5925.661 kb on - strand, within Psyr_4996 at 5925.661 kb on - strand, within Psyr_4996 at 5925.661 kb on - strand, within Psyr_4996 at 5925.661 kb on - strand, within Psyr_4996 at 5925.661 kb on - strand, within Psyr_4996 at 5925.661 kb on - strand, within Psyr_4996 at 5925.725 kb on + strand, within Psyr_4996 at 5925.728 kb on + strand, within Psyr_4996 at 5925.803 kb on + strand, within Psyr_4996 at 5925.810 kb on - strand, within Psyr_4996 at 5926.010 kb on + strand at 5926.022 kb on - strand at 5926.028 kb on + strand at 5926.045 kb on - strand at 5926.127 kb on + strand at 5926.127 kb on + strand at 5926.128 kb on - strand at 5926.128 kb on - strand at 5926.153 kb on + strand at 5926.153 kb on + strand at 5926.153 kb on - strand at 5926.154 kb on - strand at 5926.190 kb on - strand at 5926.224 kb on - strand at 5926.275 kb on + strand at 5926.512 kb on - strand, within Psyr_4997 at 5926.512 kb on - strand, within Psyr_4997 at 5926.516 kb on - strand, within Psyr_4997 at 5926.516 kb on - strand, within Psyr_4997 at 5926.516 kb on - strand, within Psyr_4997 at 5926.516 kb on - strand, within Psyr_4997 at 5926.516 kb on - strand, within Psyr_4997 at 5926.692 kb on + strand, within Psyr_4997 at 5926.692 kb on + strand, within Psyr_4997 at 5926.692 kb on + strand, within Psyr_4997 at 5926.692 kb on + strand, within Psyr_4997 at 5926.692 kb on + strand, within Psyr_4997 at 5926.692 kb on + strand, within Psyr_4997 at 5926.692 kb on + strand, within Psyr_4997 at 5926.692 kb on + strand, within Psyr_4997 at 5926.692 kb on + strand, within Psyr_4997 at 5926.692 kb on + strand, within Psyr_4997 at 5926.692 kb on + strand, within Psyr_4997 at 5926.885 kb on + strand, within Psyr_4997
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml remove 5,924,437 + Psyr_4994 0.69 -3.6 5,924,633 + -2.2 5,924,633 + +0.0 5,924,633 + +0.2 5,924,633 + +0.6 5,924,633 + -0.9 5,924,848 + Psyr_4995 0.49 +0.7 5,924,991 + Psyr_4995 0.77 +2.8 5,925,007 + Psyr_4995 0.80 -1.5 5,925,012 + Psyr_4995 0.81 -0.8 5,925,080 + -1.7 5,925,080 + -1.3 5,925,081 - +0.2 5,925,088 - -3.7 5,925,091 + -0.5 5,925,092 - +0.2 5,925,174 + +2.2 5,925,175 - -0.4 5,925,178 - -2.5 5,925,210 + -1.2 5,925,220 - +0.1 5,925,226 - +2.2 5,925,252 + +1.8 5,925,253 - -2.8 5,925,253 - -0.4 5,925,394 - +0.2 5,925,482 + Psyr_4996 0.24 -2.1 5,925,506 - Psyr_4996 0.28 +1.2 5,925,535 + Psyr_4996 0.32 -0.8 5,925,536 - Psyr_4996 0.33 -1.8 5,925,536 - Psyr_4996 0.33 -1.4 5,925,570 - Psyr_4996 0.38 +2.5 5,925,570 - Psyr_4996 0.38 +2.5 5,925,651 - Psyr_4996 0.51 -1.8 5,925,660 + Psyr_4996 0.53 +3.2 5,925,660 + Psyr_4996 0.53 -0.5 5,925,660 + Psyr_4996 0.53 +3.0 5,925,660 + Psyr_4996 0.53 +0.2 5,925,660 + Psyr_4996 0.53 +1.2 5,925,660 + Psyr_4996 0.53 -2.6 5,925,660 + Psyr_4996 0.53 -2.3 5,925,660 + Psyr_4996 0.53 -1.8 5,925,660 + Psyr_4996 0.53 +2.2 5,925,661 - Psyr_4996 0.53 -2.9 5,925,661 - Psyr_4996 0.53 +1.8 5,925,661 - Psyr_4996 0.53 -2.0 5,925,661 - Psyr_4996 0.53 +1.8 5,925,661 - Psyr_4996 0.53 -3.0 5,925,661 - Psyr_4996 0.53 -2.2 5,925,661 - Psyr_4996 0.53 +3.0 5,925,661 - Psyr_4996 0.53 +1.2 5,925,725 + Psyr_4996 0.63 -2.5 5,925,728 + Psyr_4996 0.64 -1.5 5,925,803 + Psyr_4996 0.76 +3.4 5,925,810 - Psyr_4996 0.77 -2.8 5,926,010 + -0.9 5,926,022 - -1.9 5,926,028 + +2.2 5,926,045 - -0.8 5,926,127 + -1.2 5,926,127 + -0.8 5,926,128 - +1.8 5,926,128 - +1.2 5,926,153 + +0.5 5,926,153 + -0.2 5,926,153 - -0.1 5,926,154 - +2.5 5,926,190 - -0.8 5,926,224 - -4.1 5,926,275 + -0.1 5,926,512 - Psyr_4997 0.10 -1.9 5,926,512 - Psyr_4997 0.10 -0.1 5,926,516 - Psyr_4997 0.10 +0.8 5,926,516 - Psyr_4997 0.10 +1.2 5,926,516 - Psyr_4997 0.10 +2.5 5,926,516 - Psyr_4997 0.10 +1.2 5,926,516 - Psyr_4997 0.10 -0.6 5,926,692 + Psyr_4997 0.21 +0.2 5,926,692 + Psyr_4997 0.21 -1.1 5,926,692 + Psyr_4997 0.21 -1.1 5,926,692 + Psyr_4997 0.21 +0.2 5,926,692 + Psyr_4997 0.21 -1.2 5,926,692 + Psyr_4997 0.21 -1.3 5,926,692 + Psyr_4997 0.21 +0.2 5,926,692 + Psyr_4997 0.21 +0.8 5,926,692 + Psyr_4997 0.21 -0.1 5,926,692 + Psyr_4997 0.21 +2.5 5,926,692 + Psyr_4997 0.21 -1.0 5,926,885 + Psyr_4997 0.32 -0.7
Or see this region's nucleotide sequence