Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4883

Experiment: KB with Benzalkonium Chloride 6.25 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4881 and Psyr_4882 are separated by 61 nucleotidesPsyr_4882 and Psyr_4883 are separated by 40 nucleotidesPsyr_4883 and Psyr_4884 are separated by 2 nucleotidesPsyr_4884 and Psyr_4885 are separated by 99 nucleotides Psyr_4881: Psyr_4881 - RNA methyltransferase TrmH, group 2, at 5,792,437 to 5,792,892 _4881 Psyr_4882: Psyr_4882 - protein translocase subunit secB, at 5,792,954 to 5,793,442 _4882 Psyr_4883: Psyr_4883 - Glutaredoxin, at 5,793,483 to 5,793,734 _4883 Psyr_4884: Psyr_4884 - Rhodanese-like protein, at 5,793,737 to 5,794,150 _4884 Psyr_4885: Psyr_4885 - phosphoglycerate mutase, at 5,794,250 to 5,795,839 _4885 Position (kb) 5793 5794Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 5792.499 kb on - strand, within Psyr_4881at 5792.596 kb on + strand, within Psyr_4881at 5792.596 kb on + strand, within Psyr_4881at 5792.596 kb on + strand, within Psyr_4881at 5792.596 kb on + strand, within Psyr_4881at 5792.597 kb on - strand, within Psyr_4881at 5792.829 kb on + strand, within Psyr_4881at 5792.860 kb on + strandat 5792.860 kb on + strandat 5792.860 kb on + strandat 5792.861 kb on - strandat 5792.861 kb on - strandat 5793.010 kb on - strand, within Psyr_4882at 5793.062 kb on + strand, within Psyr_4882at 5793.062 kb on + strand, within Psyr_4882at 5793.062 kb on + strand, within Psyr_4882at 5793.062 kb on + strand, within Psyr_4882at 5793.062 kb on + strand, within Psyr_4882at 5793.063 kb on - strand, within Psyr_4882at 5793.063 kb on - strand, within Psyr_4882at 5793.093 kb on + strand, within Psyr_4882at 5793.093 kb on + strand, within Psyr_4882at 5793.094 kb on - strand, within Psyr_4882at 5793.173 kb on - strand, within Psyr_4882at 5793.243 kb on - strand, within Psyr_4882at 5793.252 kb on + strand, within Psyr_4882at 5793.252 kb on + strand, within Psyr_4882at 5793.369 kb on + strand, within Psyr_4882at 5793.369 kb on + strand, within Psyr_4882at 5793.369 kb on + strand, within Psyr_4882at 5793.369 kb on + strand, within Psyr_4882at 5793.369 kb on + strand, within Psyr_4882at 5793.369 kb on + strand, within Psyr_4882at 5793.369 kb on + strand, within Psyr_4882at 5793.370 kb on - strand, within Psyr_4882at 5793.370 kb on - strand, within Psyr_4882at 5793.370 kb on - strand, within Psyr_4882at 5793.370 kb on - strand, within Psyr_4882at 5793.370 kb on - strand, within Psyr_4882at 5793.370 kb on - strand, within Psyr_4882at 5793.373 kb on + strand, within Psyr_4882at 5793.373 kb on + strand, within Psyr_4882at 5793.373 kb on + strand, within Psyr_4882at 5793.373 kb on + strand, within Psyr_4882at 5793.374 kb on - strand, within Psyr_4882at 5793.462 kb on - strandat 5793.584 kb on + strand, within Psyr_4883at 5793.585 kb on - strand, within Psyr_4883at 5793.585 kb on - strand, within Psyr_4883at 5793.585 kb on - strand, within Psyr_4883at 5793.585 kb on - strand, within Psyr_4883at 5793.687 kb on + strand, within Psyr_4883at 5793.687 kb on + strand, within Psyr_4883at 5793.687 kb on + strand, within Psyr_4883at 5793.687 kb on + strand, within Psyr_4883at 5793.688 kb on - strand, within Psyr_4883at 5793.688 kb on - strand, within Psyr_4883at 5793.688 kb on - strand, within Psyr_4883at 5793.688 kb on - strand, within Psyr_4883at 5793.688 kb on - strand, within Psyr_4883at 5793.688 kb on - strand, within Psyr_4883at 5793.688 kb on - strand, within Psyr_4883at 5793.688 kb on - strand, within Psyr_4883at 5793.688 kb on - strand, within Psyr_4883at 5793.688 kb on - strand, within Psyr_4883at 5793.694 kb on + strand, within Psyr_4883at 5793.694 kb on + strand, within Psyr_4883at 5793.704 kb on - strand, within Psyr_4883at 5793.715 kb on + strandat 5793.715 kb on + strandat 5793.864 kb on - strand, within Psyr_4884at 5793.885 kb on + strand, within Psyr_4884at 5793.885 kb on + strand, within Psyr_4884at 5793.885 kb on + strand, within Psyr_4884at 5793.885 kb on + strand, within Psyr_4884at 5793.886 kb on - strand, within Psyr_4884at 5793.886 kb on - strand, within Psyr_4884at 5793.886 kb on - strand, within Psyr_4884at 5793.886 kb on - strand, within Psyr_4884at 5793.886 kb on - strand, within Psyr_4884at 5793.914 kb on + strand, within Psyr_4884at 5793.914 kb on + strand, within Psyr_4884at 5793.914 kb on + strand, within Psyr_4884at 5793.915 kb on - strand, within Psyr_4884at 5793.915 kb on - strand, within Psyr_4884at 5793.963 kb on + strand, within Psyr_4884at 5793.964 kb on - strand, within Psyr_4884at 5794.113 kb on + strandat 5794.113 kb on + strandat 5794.114 kb on - strandat 5794.154 kb on + strandat 5794.155 kb on - strandat 5794.155 kb on - strandat 5794.184 kb on + strandat 5794.186 kb on + strandat 5794.186 kb on + strandat 5794.186 kb on + strandat 5794.186 kb on + strandat 5794.186 kb on + strandat 5794.186 kb on + strandat 5794.186 kb on + strandat 5794.187 kb on - strandat 5794.187 kb on - strandat 5794.187 kb on - strandat 5794.187 kb on - strandat 5794.187 kb on - strandat 5794.187 kb on - strandat 5794.187 kb on - strandat 5794.187 kb on - strandat 5794.187 kb on - strandat 5794.187 kb on - strandat 5794.187 kb on - strandat 5794.247 kb on - strandat 5794.247 kb on - strandat 5794.264 kb on + strandat 5794.264 kb on + strandat 5794.264 kb on + strandat 5794.264 kb on + strandat 5794.265 kb on - strandat 5794.306 kb on + strandat 5794.306 kb on + strandat 5794.306 kb on + strandat 5794.306 kb on + strandat 5794.306 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Benzalkonium Chloride 6.25 ug/ml
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5,792,499 - Psyr_4881 0.14 +0.2
5,792,596 + Psyr_4881 0.35 -2.7
5,792,596 + Psyr_4881 0.35 -1.5
5,792,596 + Psyr_4881 0.35 -0.3
5,792,596 + Psyr_4881 0.35 -0.3
5,792,597 - Psyr_4881 0.35 -3.7
5,792,829 + Psyr_4881 0.86 +0.9
5,792,860 + +3.2
5,792,860 + -0.2
5,792,860 + +2.8
5,792,861 - +0.6
5,792,861 - +1.8
5,793,010 - Psyr_4882 0.11 +1.8
5,793,062 + Psyr_4882 0.22 +1.2
5,793,062 + Psyr_4882 0.22 +4.5
5,793,062 + Psyr_4882 0.22 -0.6
5,793,062 + Psyr_4882 0.22 -0.9
5,793,062 + Psyr_4882 0.22 +4.1
5,793,063 - Psyr_4882 0.22 +1.1
5,793,063 - Psyr_4882 0.22 +5.4
5,793,093 + Psyr_4882 0.28 -0.9
5,793,093 + Psyr_4882 0.28 +0.3
5,793,094 - Psyr_4882 0.29 +1.5
5,793,173 - Psyr_4882 0.45 -2.5
5,793,243 - Psyr_4882 0.59 +0.3
5,793,252 + Psyr_4882 0.61 -2.2
5,793,252 + Psyr_4882 0.61 +0.9
5,793,369 + Psyr_4882 0.85 +1.1
5,793,369 + Psyr_4882 0.85 +0.2
5,793,369 + Psyr_4882 0.85 +4.6
5,793,369 + Psyr_4882 0.85 -0.4
5,793,369 + Psyr_4882 0.85 -0.3
5,793,369 + Psyr_4882 0.85 +1.8
5,793,369 + Psyr_4882 0.85 +2.8
5,793,370 - Psyr_4882 0.85 -0.1
5,793,370 - Psyr_4882 0.85 +3.8
5,793,370 - Psyr_4882 0.85 +2.8
5,793,370 - Psyr_4882 0.85 -0.3
5,793,370 - Psyr_4882 0.85 +3.2
5,793,370 - Psyr_4882 0.85 -4.7
5,793,373 + Psyr_4882 0.86 +2.2
5,793,373 + Psyr_4882 0.86 +2.6
5,793,373 + Psyr_4882 0.86 -0.8
5,793,373 + Psyr_4882 0.86 +3.0
5,793,374 - Psyr_4882 0.86 -0.2
5,793,462 - -3.2
5,793,584 + Psyr_4883 0.40 -3.1
5,793,585 - Psyr_4883 0.40 -1.2
5,793,585 - Psyr_4883 0.40 +1.1
5,793,585 - Psyr_4883 0.40 +3.8
5,793,585 - Psyr_4883 0.40 +1.2
5,793,687 + Psyr_4883 0.81 -2.4
5,793,687 + Psyr_4883 0.81 -0.9
5,793,687 + Psyr_4883 0.81 -0.5
5,793,687 + Psyr_4883 0.81 -2.1
5,793,688 - Psyr_4883 0.81 +3.6
5,793,688 - Psyr_4883 0.81 +3.8
5,793,688 - Psyr_4883 0.81 -0.0
5,793,688 - Psyr_4883 0.81 -0.3
5,793,688 - Psyr_4883 0.81 -1.5
5,793,688 - Psyr_4883 0.81 -2.4
5,793,688 - Psyr_4883 0.81 +4.2
5,793,688 - Psyr_4883 0.81 +1.8
5,793,688 - Psyr_4883 0.81 +2.8
5,793,688 - Psyr_4883 0.81 +1.5
5,793,694 + Psyr_4883 0.84 +0.2
5,793,694 + Psyr_4883 0.84 +3.7
5,793,704 - Psyr_4883 0.88 +3.4
5,793,715 + -1.8
5,793,715 + -0.2
5,793,864 - Psyr_4884 0.31 -0.6
5,793,885 + Psyr_4884 0.36 +1.2
5,793,885 + Psyr_4884 0.36 -3.2
5,793,885 + Psyr_4884 0.36 +3.0
5,793,885 + Psyr_4884 0.36 -2.5
5,793,886 - Psyr_4884 0.36 -2.2
5,793,886 - Psyr_4884 0.36 -1.8
5,793,886 - Psyr_4884 0.36 -2.8
5,793,886 - Psyr_4884 0.36 +1.8
5,793,886 - Psyr_4884 0.36 +1.2
5,793,914 + Psyr_4884 0.43 -3.9
5,793,914 + Psyr_4884 0.43 +0.2
5,793,914 + Psyr_4884 0.43 +0.2
5,793,915 - Psyr_4884 0.43 -3.8
5,793,915 - Psyr_4884 0.43 -1.8
5,793,963 + Psyr_4884 0.55 +1.8
5,793,964 - Psyr_4884 0.55 +2.2
5,794,113 + -1.0
5,794,113 + +0.2
5,794,114 - -1.2
5,794,154 + +0.2
5,794,155 - -2.9
5,794,155 - +0.2
5,794,184 + +1.8
5,794,186 + -2.7
5,794,186 + +0.4
5,794,186 + -1.5
5,794,186 + -2.5
5,794,186 + -2.3
5,794,186 + -0.8
5,794,186 + -0.4
5,794,187 - -1.7
5,794,187 - +1.8
5,794,187 - -0.9
5,794,187 - -0.6
5,794,187 - -1.5
5,794,187 - -1.6
5,794,187 - +3.4
5,794,187 - -2.1
5,794,187 - +1.3
5,794,187 - -1.2
5,794,187 - +1.1
5,794,247 - -0.7
5,794,247 - +0.0
5,794,264 + +0.2
5,794,264 + -0.0
5,794,264 + -0.7
5,794,264 + +3.4
5,794,265 - +1.8
5,794,306 + -2.6
5,794,306 + -2.9
5,794,306 + +0.2
5,794,306 + -0.3
5,794,306 + -3.4

Or see this region's nucleotide sequence